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Angela Alexander, S. Cai, Jinhee Kim, A. Nañez, M. Sahin, K. Maclean, K. Inoki, K. Guan, Jianjun Shen, M. Person, D. Kusewitt, G. Mills, M. Kastan, C. Walker (2010)
ATM signals to TSC2 in the cytoplasm to regulate mTORC1 in response to ROSProceedings of the National Academy of Sciences, 107
Mitsuko Hayashi-Nishino, Naonobu Fujita, T. Noda, A. Yamaguchi, T. Yoshimori, A. Yamamoto (2009)
A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formationNature Cell Biology, 11
T. Kanki, Ke Wang, Yang Cao, M. Baba, D. Klionsky (2009)
Atg32 is a mitochondrial protein that confers selectivity during mitophagy.Developmental cell, 17 1
G. Balaburski, R. Hontz, M. Murphy (2010)
p53 and ARF: unexpected players in autophagy.Trends in cell biology, 20 6
E. Tasdemir, M. Maiuri, L. Galluzzi, I. Vitale, M. Djavaheri-Mergny, M. D’Amelio, A. Criollo, E. Morselli, Changlian Zhu, F. Harper, U. Nannmark, C. Samara, P. Pinton, J. Vicencio, R. Carnuccio, U. Moll, F. Madeo, P. Paterlini-Bréchot, R. Rizzuto, G. Szabadkai, G. Pierron, K. Blomgren, Nektarios Tavernarakis, P. Codogno, F. Cecconi, G. Kroemer (2008)
Regulation of autophagy by cytoplasmic p53Nature Cell Biology, 10
Yiyu Zheng, Shahab Shahnazari, A. Brech, T. Lamark, T. Johansen, J. Brumell (2009)
The Adaptor Protein p62/SQSTM1 Targets Invading Bacteria to the Autophagy Pathway1The Journal of Immunology, 183
(2010)
The mechanisms for how apotosis and pro-apoptotic molecules can modulate the functionality of Beclin-1 have been unknown. This study reports the significant finding that caspases can cleave Beclin-1
I. Mitroulis, I. Kourtzelis, K. Kambas, S. Rafail, A. Chrysanthopoulou, M. Speletas, K. Ritis (2010)
Regulation of the autophagic machinery in human neutrophilsEuropean Journal of Immunology, 40
L. Travassos, L. Carneiro, Mahendrasingh Ramjeet, S. Hussey, Yun-Gi Kim, J. Magalhaes, L. Yuan, F. Soares, Evelyn Chea, L. Bourhis, I. Boneca, A. Allaoui, N. Jones, G. Núñez, S. Girardin, D. Philpott (2010)
Nod1 and Nod2 direct autophagy by recruiting ATG16L1 to the plasma membrane at the site of bacterial entryNature Immunology, 11
Zhifen Yang, D. Klionsky (2009)
An overview of the molecular mechanism of autophagy.Current topics in microbiology and immunology, 335
A. Alexandera, Shengguan Caia, Jinhee Kima, Adrian Naneza, Mustafa Sahinc, Kirsteen MacLeand, Ken Inokie, Kun-Liang Guanf, Jian Shena, Maria Persong, Donna Kusewitta, Gordon Millsh, Michael Kastand, Cheryl Walkera (2012)
ATM signals to TSC 2 in the cytoplasm to regulate mTORC 1 in response to ROS
I. Novak, V. Kirkin, David McEwan, Ji Zhang, P. Wild, Alexis Rozenknop, V. Rogov, F. Löhr, Doris Popovic, A. Occhipinti, A. Reichert, J. Terzic, V. Dötsch, P. Ney, I. Dikič (2010)
Nix is a selective autophagy receptor for mitochondrial clearanceEMBO reports, 11
A. Kaser, Ann-Hwee Lee, A. Franke, J. Glickman, S. Zeissig, H. Tilg, E. Nieuwenhuis, D. Higgins, S. Schreiber, L. Glimcher, R. Blumberg (2008)
XBP1 Links ER Stress to Intestinal Inflammation and Confers Genetic Risk for Human Inflammatory Bowel DiseaseCell, 134
Another cargo selection signal, Nix is required for clearance of mitochondria from maturing reticulocytes, an example of autophagy as a crucial lineage differentiation factor
R. Cooney, J. Baker, O. Brain, B. Danis, T. Pichulik, P. Allan, D. Ferguson, B. Campbell, D. Jewell, A. Simmons (2010)
NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentationNature Medicine, 16
Simon Miller, Brandon Tavshanjian, A. Oleksy, O. Perisic, B. Houseman, K. Shokat, Roger Williams (2010)
Shaping Development of Autophagy Inhibitors with the Structure of the Lipid Kinase Vps34Science, 327
E. Morselli, E. Tasdemir, M. Maiuri, L. Galluzzi, O. Kepp, A. Criollo, J. Vicencio, T. Soussi, G. Kroemer (2008)
Mutant p53 protein localized in the cytoplasm inhibits autophagyCell Cycle, 7
(2010)
PINK 1 / Parkin - mediated mitophagy is dependent on VDAC 1 and p 62 / SQSTM 1
H. Virgin, B. Levine (2009)
Autophagy genes in immunityNature Immunology, 10
Ellen Wirawan, L. Walle, K. Kersse, S. Cornelis, S. Cornelis, S. Claerhout, Isabel Vanoverberghe, R. Roelandt, R. Rycke, Jelle Verspurten, W. Declercq, P. Agostinis, T. Berghe, S. Lippens, P. Vandenabeele (2010)
Caspase-mediated cleavage of Beclin-1 inactivates Beclin-1-induced autophagy and enhances apoptosis by promoting the release of proapoptotic factors from mitochondriaCell Death & Disease, 1
M. Komatsu, H. Kurokawa, S. Waguri, K. Taguchi, A. Kobayashi, Yoshinobu Ichimura, Yu-Shin Sou, Izumi Ueno, A. Sakamoto, K. Tong, Mihee Kim, Y. Nishito, S. Iemura, T. Natsume, T. Ueno, E. Kominami, H. Motohashi, Keiji Tanaka, Masayuki Yamamoto (2010)
The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1Nature Cell Biology, 12
V. Kirkin, T. Lamark, Yu-Shin Sou, G. Bjørkøy, Jennifer Nunn, J. Bruun, E. Shvets, David McEwan, T. Clausen, P. Wild, Ivana Bilusic, Jean-Philippe Theurillat, Aud Øvervatn, T. Ishii, Z. Elazar, M. Komatsu, I. Dikič, T. Johansen (2009)
A role for NBR1 in autophagosomal degradation of ubiquitinated substrates.Molecular cell, 33 4
Ruth Scherz-Shouval, E. Shvets, E. Fass, Hagai Shorer, L. Gil, Z. Elazar (2007)
Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4The EMBO Journal, 26
Robert Heath, R. Xavier (2009)
Autophagy, immunity and human diseaseCurrent Opinion in Gastroenterology, 25
Teresa Thurston, Grigory Ryzhakov, S. Bloor, Natalia Muhlinen, F. Randow (2009)
The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteriaNature Immunology, 10
K. Cadwell, John Liu, Sarah Brown, H. Miyoshi, Joy Loh, J. Lennerz, C. Kishi, Wumesh Kc, Javier Carrero, S. Hunt, C. Stone, E. Brunt, R. Xavier, B. Sleckman, Ellen Li, N. Mizushima, T. Stappenbeck, H. Iv (2008)
A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cellsNature, 456
Ju Huang, Veronica Canadien, G. Lam, B. Steinberg, M. Dinauer, M. Magalhaes, M. Glogauer, S. Grinstein, J. Brumell (2009)
Activation of antibacterial autophagy by NADPH oxidasesProceedings of the National Academy of Sciences, 106
Anthony Orvedahl, S. Macpherson, R. Sumpter, Z. Tallóczy, Z. Zou, B. Levine (2010)
Autophagy protects against Sindbis virus infection of the central nervous system.Cell host & microbe, 7 2
Monika Mortensen, David Ferguson, Mariola Edelmann, B. Kessler, K. Morten, M. Komatsu, A. Simon (2009)
Loss of autophagy in erythroid cells leads to defective removal of mitochondria and severe anemia in vivoProceedings of the National Academy of Sciences, 107
L. Stephenson, Brian Miller, Aylwin Ng, Jason Eisenberg, Zijiang Zhao, K. Cadwell, D. Graham, N. Mizushima, R. Xavier, H. Virgin, W. Swat (2009)
Identification of Atg5-dependent transcriptional changes and increases in mitochondrial mass in Atg5-deficient T lymphocytesAutophagy, 5
(2008)
XBP 1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease
Tatsuhiro Sato, A. Nakashima, Lea Guo, Kimberly Coffman, F. Tamanoi (2010)
Single amino-acid changes that confer constitutive activation of mTOR are discovered in human cancerOncogene, 29
Y. Kabeya, N. Mizushima, T. Ueno, A. Yamamoto, T. Kirisako, Takeshi Noda, E. Kominami, Y. Ohsumi, T. Yoshimori (2000)
LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processingThe EMBO Journal, 19
Akiko Kuma, M. Hatano, M. Matsui, A. Yamamoto, H. Nakaya, T. Yoshimori, Y. Ohsumi, T. Tokuhisa, N. Mizushima (2004)
The role of autophagy during the early neonatal starvation periodNature, 432
Claire Richardson, T. Kooistra, Dennis Kim (2010)
An Essential Role for XBP-1 in Host Protection against Immune Activation in C. elegansNature, 463
Heather Pua, Jian Guo, M. Komatsu, You-Wen He (2009)
Autophagy Is Essential for Mitochondrial Clearance in Mature T Lymphocytes1The Journal of Immunology, 182
Sovan Sarkar, E. Perlstein, S. Imarisio, S. Pineau, A. Cordenier, R. Maglathlin, J. Webster, T. Lewis, C. O’Kane, S. Schreiber, D. Rubinsztein (2007)
Small molecules enhance autophagy and reduce toxicity in Huntington's disease models.Nature chemical biology, 3 6
S. Yousefi, R. Perozzo, Inès Schmid, A. Ziemiecki, T. Schaffner, L. Scapozza, T. Brunner, H. Simon (2006)
Calpain-mediated cleavage of Atg5 switches autophagy to apoptosisNature Cell Biology, 8
Places mTORC1 within the oxidative sensing pathway, via cytoplasmic ATM. Expands the role of mTOR beyond nutrient signaling into a major hub controlling autophagy and cell state
H. Lee, Lisa Mattei, B. Steinberg, P. Alberts, Yun-Hee Lee, A. Chervonsky, N. Mizushima, S. Grinstein, A. Iwasaki (2010)
In vivo requirement for Atg5 in antigen presentation by dendritic cells.Immunity, 32 2
(2010)
In vivo requirement for Atg 5 in antigen presentation by dendritic cells
Sven Geisler, Kira Holmström, Diana Skujat, F. Fiesel, Oliver Rothfuss, P. Kahle, W. Springer (2010)
PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1Nature Cell Biology, 12
These three studies identify three key autophagic adaptors which are crucial for the targeting of specific cargo to the autophagic pathway
C. Collinet, M. Stöter, C. Bradshaw, N. Samusik, J. Rink, D. Kenski, B. Habermann, F. Buchholz, R. Henschel, Matthias Mueller, W. Nagel, Eugenio Fava, Y. Kalaidzidis, M. Zerial (2010)
Systems survey of endocytosis by multiparametric image analysisNature, 464
N. Noda, H. Kumeta, H. Nakatogawa, K. Satoo, Wakana Adachi, J. Ishii, Y. Fujioka, Y. Ohsumi, F. Inagaki (2008)
Structural basis of target recognition by Atg8/LC3 during selective autophagyGenes to Cells, 13
Demonstrates that Nod2 localizes Atg16L1 to sites of bacterial entry, assisting autophagy of intracellular bacteria. A Crohn's disease-associated Nod2 mutation failed to mediate Atg16L1 localization
N. Ktistakis, Simon Andrews, Joshua Long (2008)
Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulumThe Journal of Cell Biology, 182
(2007)
Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg 4
a,b a a,b,c Alan Huett , Gautam Goel and Ramnik J. Xavier Center for Computational and Integrative Biology, Purpose of review Gastrointestinal Unit, Center for Inflammatory Bowel The field of autophagy is rapidly expanding to encompass many important areas of cell Disease, Massachusetts General Hospital, Harvard Medical School, Boston and The Broad Institute of biology, physiology and disease. Recent discoveries and tools allow the connection of MIT and Harvard, Cambridge, Massachusetts, USA the autophagy pathway to other cellular signals and processes, thus beginning a Correspondence to Ramnik J. Xavier, Center for systematic approach to elucidation of autophagy components, functions and Computational and Integrative Biology, Massachusetts connections. General Hospital, Richard B. Simches Research Center, 185 Cambridge Street, 7th Floor, Boston, MA Recent findings 02114, USA We outline recent discoveries illustrating the role of autophagy in Parkinson’s disease, Tel: +1 6176433331; fax: +1 617 643 3328; e-mail: [email protected], inflammatory bowel disease (IBD) and cancer. Recently important details of the [email protected], mechanisms by which autophagy operates in these contexts have been elucidated. We [email protected] illustrate how autophagy can be triggered by diverse stimuli and how cell fate is Current Opinion in Gastroenterology 2010, determined by the responses to many signals and stresses.
Current Opinion in Gastroenterology – Wolters Kluwer Health
Published: Jul 1, 2010
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