Access the full text.
Sign up today, get DeepDyve free for 14 days.
Maria Hutchins, D. Klionsky (2001)
Vacuolar Localization of Oligomeric α-Mannosidase Requires the Cytoplasm to Vacuole Targeting and Autophagy Pathway Components in Saccharomyces cerevisiae *The Journal of Biological Chemistry, 276
J. Imai, H. Yashiroda, M. Maruya, I. Yahara, Keiji Tanaka (2003)
Proteasomes and Molecular Chaperones : Cellular Machinery Responsible for Folding and Destruction of Unfolded ProteinsCell Cycle, 2
H. Shieh, H. Chiang (1998)
In Vitro Reconstitution of Glucose-induced Targeting of Fructose-1,6-bisphosphatase into the Vacuole in Semi-intact Yeast Cells*The Journal of Biological Chemistry, 273
P. Saftig, K. Figura, Yoshitaka Tanaka, Renate Lüllmann-Rauch (2001)
Disease model: LAMP-2 enlightens Danon disease.Trends in molecular medicine, 7 1
Suresh Subramani, and Koller, W. Snyder (2000)
Import of peroxisomal matrix and membrane proteins.Annual review of biochemistry, 69
T. Darsow, S. Rieder, S. Emr (1997)
A Multispecificity Syntaxin Homologue, Vam3p, Essential for Autophagic and Biosynthetic Protein Transport to the VacuoleThe Journal of Cell Biology, 138
A. Matsuura, M. Tsukada, Y. Wada, Y. Ohsumi (1997)
Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae.Gene, 192 2
P. Dennis, A. Jaeschke, M. Saitoh, B. Fowler, S. Kozma, George Thomas (2001)
Mammalian TOR: A Homeostatic ATP SensorScience, 294
J. Dice (2000)
Lysosomal Pathways of Protein Degradation
M. Hariri, G. Millane, M. Guimond, G. Guay, J. Dennis, I. Nabi (2000)
Biogenesis of multilamellar bodies via autophagy.Molecular biology of the cell, 11 1
J. Lemasters, T. Qian, Lihua He, Jae‐Sung Kim, S. Elmore, W. Cascio, D. Brenner (2002)
Role of mitochondrial inner membrane permeabilization in necrotic cell death, apoptosis, and autophagy.Antioxidants & redox signaling, 4 5
A. Barrett, H. Kirschke (1981)
[41] Cathepsin B, cathepsin H, and cathepsin LMethods in Enzymology, 80
K. Roberg, Katarina Kågedal, K. Ollinger (2002)
Microinjection of cathepsin d induces caspase-dependent apoptosis in fibroblasts.The American journal of pathology, 161 1
I. Tanida, E. Tanida-Miyake, M. Komatsu, T. Ueno, E. Kominami (2002)
Human Apg3p/Aut1p Homologue Is an Authentic E2 Enzyme for Multiple Substrates, GATE-16, GABARAP, and MAP-LC3, and Facilitates the Conjugation of hApg12p to hApg5p*The Journal of Biological Chemistry, 277
Y. Kamada, T. Funakoshi, T. Shintani, K. Nagano, M. Ohsumi, Y. Ohsumi (2000)
Tor-Mediated Induction of Autophagy via an Apg1 Protein Kinase ComplexThe Journal of Cell Biology, 150
R. Masaki, A. Yamamoto, Y. Tashiro (1987)
Cytochrome P-450 and NADPH-cytochrome P-450 reductase are degraded in the autolysosomes in rat liver [published erratum appears in J Cell Biol 1987 Jul;105(1):609]The Journal of Cell Biology, 104
GE Mortimore, G Miotto, R Venerando, M Kadowaki (1996)
AutophagySubcell Biochem, 27
N. Katunuma, E. Kominami (1983)
Structures and functions of lysosomal thiol proteinases and their endogenous inhibitor.Current topics in cellular regulation, 22
H. Chiang, R. Schekman, S. Hamamoto (1996)
Selective Uptake of Cytosolic, Peroxisomal, and Plasma Membrane Proteins into the Yeast Lysosome for Degradation (*)The Journal of Biological Chemistry, 271
M. Thumm, R. Egner, B. Koch, M. Schlumpberger, M. Straub, M. Veenhuis, D. Wolf (1994)
Isolation of autophagocytosis mutants of Saccharomyces cerevisiaeFEBS Letters, 349
P. Seglen, T. Berg, H. Blankson, Monica Fengsrud, I. Holen, P. Strømhaug (1996)
Structural aspects of autophagy.Advances in experimental medicine and biology, 389
P. Gordon, I. Holen, M. Fosse, J Røtnes, P. Seglen (1993)
Dependence of hepatocytic autophagy on intracellularly sequestered calcium.The Journal of biological chemistry, 268 35
S. Gorski, S. Chittaranjan, E. Pleasance, J. Freeman, Carrie Anderson, R. Varhol, S. Coughlin, S. Zuyderduyn, Steven Jones, M. Marra (2003)
A SAGE Approach to Discovery of Genes Involved in Autophagic Cell DeathCurrent Biology, 13
I. Suriapranata, Ulrike Epple, Daniela Bernreuther, Monika Bredschneider, Katja Sovarasteanu, M. Thumm (2000)
The breakdown of autophagic vesicles inside the vacuole depends on Aut4p.Journal of cell science, 113 ( Pt 22)
J. Doelling, Joseph Walker, Eric Friedman, Allison Thompson, R. Vierstra (2002)
The APG8/12-activating Enzyme APG7 Is Required for Proper Nutrient Recycling and Senescence in Arabidopsis thaliana *The Journal of Biological Chemistry, 277
P. Strømhaug, T. Berg, Monica Fengsrud, P. Seglen (1998)
Purification and characterization of autophagosomes from rat hepatocytes.The Biochemical journal, 335 ( Pt 2)
W. Bursch, A. Ellinger, C. Gerner, U. Fröhwein, R. Schulte‐Hermann (2000)
Programmed Cell Death (PCD): Apoptosis, Autophagic PCD, or Others?Annals of the New York Academy of Sciences, 926
Graciela Fuertes, José LLANO, A. Villarroya, A. Rivett, E. Knecht (2003)
Changes in the proteolytic activities of proteasomes and lysosomes in human fibroblasts produced by serum withdrawal, amino-acid deprivation and confluent conditions.The Biochemical journal, 375 Pt 1
E. Ogier-Denis, C. Bauvy, Françoise Cluzeaud, Alain Vandewalle, Patrice Codogno (2000)
Glucose persistence on high-mannose oligosaccharides selectively inhibits the macroautophagic sequestration of N-linked glycoproteins.The Biochemical journal, 345 Pt 3
Meng‐Chieh Chiang, H. Chiang (1998)
Vid24p, a Novel Protein Localized to the Fructose-1,6-bisphosphatase–containing Vesicles, Regulates Targeting of Fructose-1,6-bisphosphatase from the Vesicles to the Vacuole for DegradationThe Journal of Cell Biology, 140
N. Mizushima, Takeshi Noda, T. Yoshimori, Y. Tanaka, T. Ishii, Michael George, D. Klionsky, M. Ohsumi, Y. Ohsumi (1998)
A protein conjugation system essential for autophagyNature, 395
J. Kourie, C. Henry (2001)
Protein aggregation and deposition: implications for ion channel formation and membrane damage.Croatian medical journal, 42 4
S. Kostin, L. Pool, A. Elsässer, S. Hein, H. Drexler, Eyal Arnon, Y. Hayakawa, R. Zimmermann, E. Bauer, W. Klövekorn, J. Schaper (2003)
Myocytes Die by Multiple Mechanisms in Failing Human HeartsCirculation Research, 92
Guillermo Mariño, J. Urı́a, X. Puente, V. Quesada, J. Bordallo, C. López-Otín (2003)
Human Autophagins, a Family of Cysteine Proteinases Potentially Implicated in Cell Degradation by Autophagy*The Journal of Biological Chemistry, 278
D. Tuttle, A. Lewin, W. Dunn (1993)
Selective autophagy of peroxisomes in methylotrophic yeasts.European journal of cell biology, 60 2
Y Ohsumi (2001)
Molecular dissection of autophagy: two ubiquitin-like sys-temsNat Rev Mol Cell Biol, 2
Y. Ohsumi (2001)
Ubiquitin and proteasomes: Molecular dissection of autophagy: two ubiquitin-like systemsNature Reviews Molecular Cell Biology, 2
M. Thumm (2000)
Structure and function of the yeast vacuole and its role in autophagyMicroscopy Research and Technique, 51
Natalia Salvador, C. Aguado, M. Horst, E. Knecht (2000)
Import of a cytosolic protein into lysosomes by chaperone-mediated autophagy depends on its folding state.The Journal of biological chemistry, 275 35
A Cuervo, J Dice, E Knecht (1997)
A lysosomal population responsible for the hsc73-mediated degradation of cytosolic proteins in lysosomesJ Biol Chem, 272
K. Sugie, A. Yamamoto, K. Murayama, I. Nonaka, I. Nishino, Shin Oh, M. Takahashi, S. Saitoh, M. Mora, J. Riggs, J. Colomer, C. Iturriaga, A. Meloni, E. Byrne, C. Lamperti, S. DiMauro, M. Hirano (2002)
Clinicopathological features of genetically confirmed Danon diseaseNeurology, 58
E. Blommaart, U. Krause, J. Schellens, Heleen Vreeling‐Sindelárová, A. Meijer (1997)
The phosphatidylinositol 3-kinase inhibitors wortmannin and LY294002 inhibit autophagy in isolated rat hepatocytes.European journal of biochemistry, 243 1-2
J. Dice (1982)
Altered degradation of proteins microinjected into senescent human fibroblasts.The Journal of biological chemistry, 257 24
A. Meléndez, Z. Tallóczy, M. Seaman, E. Eskelinen, D. Hall, B. Levine (2003)
Autophagy Genes Are Essential for Dauer Development and Life-Span Extension in C. elegansScience, 301
A. Tolkovsky, L. Xue, G. Fletcher, V. Borutaite (2002)
Mitochondrial disappearance from cells: a clue to the role of autophagy in programmed cell death and disease?Biochimie, 84 2-3
P. Kerkhof, C. Santos, M. Sachse, J. Klumperman, G. Bu, G. Strous (2001)
Proteasome inhibitors block a late step in lysosomal transport of selected membrane but not soluble proteins.Molecular biology of the cell, 12 8
Pei-Hsin Huang, H. Chiang (1997)
Identification of Novel Vesicles in the Cytosol to Vacuole Protein Degradation PathwayThe Journal of Cell Biology, 136
M. Thumm, T. Kadowaki (2001)
The loss of Drosophila APG4/AUT2 function modifies the phenotypes of cut and Notch signaling pathway mutantsMolecular Genetics and Genomics, 266
M. Tsukada, Y. Ohsumi (1993)
Isolation and characterization of autophagy‐defective mutants of Saccharomyces cerevisiaeFEBS Letters, 333
M. Veenhuis, F. Salomons, I. Klei (2000)
Peroxisome biogenesis and degradation in yeast: A structure/function analysisMicroscopy Research and Technique, 51
C. Brown, J. McCann, H. Chiang (2000)
The Heat Shock Protein Ssa2p Is Required for Import of Fructose-1,6-Bisphosphatase into Vid VesiclesThe Journal of Cell Biology, 150
Oliver Müller, Tanja Sattler, M. Flötenmeyer, H. Schwarz, H. Plattner, A. Mayer (2000)
Autophagic tubes: vacuolar invaginations involved in lateral membrane sorting and inverse vesicle budding.Journal of Cell Biology, 151
Takashi Suzuki, M. Nakagawa, A. Yoshikawa, N. Sasagawa, T. Yoshimori, Y. Ohsumi, I. Nishino, S. Ishiura, I. Nonaka (2002)
The first molecular evidence that autophagy relates rimmed vacuole formation in chloroquine myopathy.Journal of biochemistry, 131 5
Y. Uchiyama (2001)
Autophagic cell death and its execution by lysosomal cathepsins.Archives of histology and cytology, 64 3
A. Cuervo, H. Hildebrand, E. Bomhard, J. Dice (1999)
Direct lysosomal uptake of α2-microglobulin contributes to chemically induced nephropathyKidney International, 55
M. Shibata, S. Kanamori, K. Isahara, Y. Ohsawa, A. Konishi, S. Kametaka, T. Watanabe, S. Ebisu, K. Ishido, E. Kominami, Y. Uchiyama (1998)
Participation of cathepsins B and D in apoptosis of PC12 cells following serum deprivation.Biochemical and biophysical research communications, 251 1
T. Cubeddu, P. Masiello, M. Pollera, E. Bergamini (1985)
Effects of antilipolytic agents on rat liver peroxisomes and peroxisomal oxidative activities.Biochimica et biophysica acta, 839 1
M. Jadot, F. Dubois, S. Coninck, R. Wattiaux (1997)
Supramolecular assemblies from lysosomal matrix proteins and complex lipids.European journal of biochemistry, 249 3
BJ Perrin, A Huttenlocher (2002)
CalpainInt J Biochem Cell Biol, 34
S. Teter, Kimberly Eggerton, S. Scott, John Kim, A. Fischer, D. Klionsky (2001)
Degradation of Lipid Vesicles in the Yeast Vacuole Requires Function of Cvt17, a Putative Lipase*The Journal of Biological Chemistry, 276
H. Stennicke, C. Ryan, G. Salvesen (2002)
Reprieval from execution: the molecular basis of caspase inhibition.Trends in biochemical sciences, 27 2
P. Roberts, S. Moshitch-Moshkovitz, E. Kvam, E. O'Toole, M. Winey, D. Goldfarb (2003)
Piecemeal microautophagy of nucleus in Saccharomyces cerevisiae.Molecular biology of the cell, 14 1
L. Monney, R. Olivier, I. Otter, Burkhard Jansen, G. Poirier, C. Borner (1998)
Role of an acidic compartment in tumor-necrosis-factor-alpha-induced production of ceramide, activation of caspase-3 and apoptosis.European journal of biochemistry, 251 1-2
D. Konecki, K. Foetisch, K. Zimmer, M. Schlotter, U. Lichter-Konecki (1995)
An alternatively spliced form of the human lysosome-associated membrane protein-2 gene is expressed in a tissue-specific manner.Biochemical and biophysical research communications, 215 2
R Masaki, A Yamamoto, Y Tashiro (1987)
Cytochrome P-450 and NADPH-cytochrome P450 reductase are degraded in the autolysoosmes in rat liverJ Cell Biol, 104
A. Cuervo, J. Dice (2000)
Age-related Decline in Chaperone-mediated Autophagy*The Journal of Biological Chemistry, 275
Á. Telbisz, A. Kovács (2000)
Intracellular protein degradation and autophagy in isolated pancreatic acini of the ratCell Biochemistry and Function, 18
Yoshitaka Tanaka, G. Guhde, Anke Suter, E. Eskelinen, D. Hartmann, R. Lüllmann-Rauch, P. Janssen, Judith Blanz, K. Figura, P. Saftig (2000)
Accumulation of autophagic vacuoles and cardiomyopathy in LAMP-2-deficient miceNature, 406
Randell Brown, JingJing Liu, G. Hung, D. Carter, Dongying Cui, H. Chiang (2003)
The Vid Vesicle to Vacuole Trafficking Event Requires Components of the SNARE Membrane Fusion Machinery*Journal of Biological Chemistry, 278
B. Winchester, A. Vellodi, E. Young (2000)
The molecular basis of lysosomal storage diseases and their treatment.Biochemical Society transactions, 28 2
M. Takahashi, Y. Hoshii, H. Kawano, T. Gondo, T. Yokota, H. Okabayashi, I. Shimada, T. Ishihara (1998)
Ultrastructural evidence for the formation of amyloid fibrils within cardiomyocytes in isolated atrial amyloid.Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis, 5 1
M. Kadowaki, R. Venerando, Giovanni Miotto, GE Mortimore (1996)
Mechanism of autophagy in permeabilized hepatocytes: evidence for regulation by GTP binding proteins.Advances in experimental medicine and biology, 389
SS Wing, HL Chiang, AL Goldberg, JF Dice (1991)
Proteins containing pep-tide sequences related to KFERQ are selectively depleted in liver and heart, but not skeletal muscle, of fasted ratsBiochem J, 275
A. Terman (1995)
The effect of age on formation and elimination of autophagic vacuoles in mouse hepatocytes.Gerontology, 41 Suppl 2
S. Vittorini, C. Paradiso, A. Donati, G. Cavallini, M. Masini, Z. Gori, M. Pollera, E. Bergamini (1999)
The age-related accumulation of protein carbonyl in rat liver correlates with the age-related decline in liver proteolytic activities.The journals of gerontology. Series A, Biological sciences and medical sciences, 54 8
J. Ahlberg, L. Marzella, H. Glaumann (1982)
Uptake and degradation of proteins by isolated rat liver lysosomes. Suggestion of a microautophagic pathway of proteolysis.Laboratory investigation; a journal of technical methods and pathology, 47 6
Akiko Kuma, N. Mizushima, Naotada Ishihara, Y. Ohsumi (2002)
Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast.The Journal of biological chemistry, 277 21
T. Shintani, K. Suzuki, Y. Kamada, Takeshi Noda, Y. Ohsumi (2001)
Apg2p Functions in Autophagosome Formation on the Perivacuolar Structure*The Journal of Biological Chemistry, 276
A Melendez, Z Talloczy, M Scaman, EL Eskelinen, DH Hall, B Levine (2003)
Essential role of autophagy genes in dauer development and lifespan extension in C. elegansScience, 301
Tanja Sattler, A. Mayer (2000)
Cell-Free Reconstitution of Microautophagic Vacuole Invagination and Vesicle FormationThe Journal of Cell Biology, 151
A. Cuervo, J. Dice (1997)
Lysosomes, a meeting point of proteins, chaperones, and proteasesJournal of Molecular Medicine, 76
U. Brunk, I. Svensson (1999)
Oxidative stress, growth factor starvation and Fas activation may all cause apoptosis through lysosomal leak.Redox report : communications in free radical research, 4 1-2
T. Shintani, N. Mizushima, Y. Ogawa, A. Matsuura, Takeshi Noda, Y. Ohsumi (1999)
Apg10p, a novel protein‐conjugating enzyme essential for autophagy in yeastThe EMBO Journal, 18
H. Chiang, Terlecky, CP Plant, J. Dice (1989)
A role for a 70-kilodalton heat shock protein in lysosomal degradation of intracellular proteins.Science, 246 4928
A. Kovács, G. Réz, Z. Pálfia, J. Kovács (2000)
Autophagy in the epithelial cells of murine seminal vesicle in vitroCell and Tissue Research, 302
N Mizushima, Y Ohsumi, T Yoshimori (2002)
Autophagosome formation in mammalian cellsCell Struct Funct, 3
Tanya Harding, K. Morano, S. Scott, D. Klionsky (1995)
Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathwayThe Journal of Cell Biology, 131
Thomas Lockwood (2000)
Redox control of protein degradation.Antioxidants & redox signaling, 2 4
J. Ahlberg, Hans Glaumann (1985)
Uptake--microautophagy--and degradation of exogenous proteins by isolated rat liver lysosomes. Effects of pH, ATP, and inhibitors of proteolysis.Experimental and molecular pathology, 42 1
H. Franch, Sira Sooparb, Jie Du, Nikia Brown (2001)
A Mechanism Regulating Proteolysis of Specific Proteins during Renal Tubular Cell Growth*The Journal of Biological Chemistry, 276
Weiping Yuan, P. Strømhaug, W. Dunn (1999)
Glucose-induced autophagy of peroxisomes in Pichia pastoris requires a unique E1-like protein.Molecular biology of the cell, 10 5
A. Bellu, M. Komori, I. Klei, J. Kiel, M. Veenhuis (2001)
Peroxisome Biogenesis and Selective Degradation Converge at Pex14p*The Journal of Biological Chemistry, 276
Yoshinobu Ichimura, T. Kirisako, T. Takao, Y. Satomi, Y. Shimonishi, Naotada Ishihara, N. Mizushima, I. Tanida, E. Kominami, M. Ohsumi, Takeshi Noda, Y. Ohsumi (2000)
A ubiquitin-like system mediates protein lipidationNature, 408
R. Nardacci, C. Sartori, S. Stefanini (2000)
Selective autophagy of clofibrate-induced rat liver peroxisomes. Cytochemistry and immunocytochemistry on tissue specimens and on fractions obtained by Nycodenz density gradient centrifugation.Cellular and molecular biology, 46 7
H. Shieh, Yong Chen, C. Brown, H. Chiang (2001)
Biochemical Analysis of Fructose-1,6-bisphosphatase Import into Vacuole Import and Degradation Vesicles Reveals a Role for UBC1 in Vesicle Biogenesis*The Journal of Biological Chemistry, 276
A. Terman, H. Dalen, J. Eaton, J. Neuzil, U. Brunk (2003)
Mitochondrial recycling and aging of cardiac myocytes: the role of autophagocytosisExperimental Gerontology, 38
S. Scott, Daniel Nice, J. Nau, L. Weisman, Y. Kamada, I. Keizer-Gunnink, T. Funakoshi, M. Veenhuis, Y. Ohsumi, D. Klionsky (2000)
Apg13p and Vac8p Are Part of a Complex of Phosphoproteins That Are Required for Cytoplasm to Vacuole Targeting*The Journal of Biological Chemistry, 275
A. Bellu, J. Kiel (2003)
Selective degradation of peroxisomes in yeastsMicroscopy Research and Technique, 61
H. Abeliovich, Chao Zhang, W. Dunn, K. Shokat, D. Klionsky (2003)
Chemical genetic analysis of Apg1 reveals a non-kinase role in the induction of autophagy.Molecular biology of the cell, 14 2
Takeshi Noda, Y. Ohsumi (1998)
Tor, a Phosphatidylinositol Kinase Homologue, Controls Autophagy in Yeast*The Journal of Biological Chemistry, 273
S Wing, H. Chiang, A. Goldberg, J. Dice (1991)
Proteins containing peptide sequences related to Lys-Phe-Glu-Arg-Gln are selectively depleted in liver and heart, but not skeletal muscle, of fasted rats.The Biochemical journal, 275 ( Pt 1)
P. Bohley (1987)
Chapter 6 Intracellular proteolysisNew Comprehensive Biochemistry, 16
B. Arunachalam, U. Phan, H. Geuze, P. Cresswell (2000)
Enzymatic reduction of disulfide bonds in lysosomes: characterization of a gamma-interferon-inducible lysosomal thiol reductase (GILT).Proceedings of the National Academy of Sciences of the United States of America, 97 2
D. Klionsky, S. Emr (2000)
Autophagy as a regulated pathway of cellular degradation.Science, 290 5497
A. Cuervo, J. Dice (2000)
Unique properties of lamp2a compared to other lamp2 isoforms.Journal of cell science, 113 Pt 24
S. Lenk, P. Susan, Ian Hickson, T. Jasionowski, W. Dunn (1999)
Ubiquitinated aldolase B accumulates during starvation‐induced lysosomal proteolysisJournal of Cellular Physiology, 178
A. Cuervo, L. Mann, E. Bonten, A. d’Azzo, J. Dice (2003)
Cathepsin A regulates chaperone‐mediated autophagy through cleavage of the lysosomal receptorThe EMBO Journal, 22
B. Inbal, S. Bialik, I. Sabanay, G. Shani, A. Kimchi (2002)
DAP kinase and DRP-1 mediate membrane blebbing and the formation of autophagic vesicles during programmed cell deathThe Journal of Cell Biology, 157
D. Klionsky, J. Cregg, W. Dunn, S. Emr, Y. Sakai, I. Sandoval, A. Sibirny, S. Subramani, M. Thumm, M. Veenhuis, Y. Ohsumi (2003)
A unified nomenclature for yeast autophagy-related genes.Developmental cell, 5 4
U. Brunk, A. Terman (2002)
The mitochondrial-lysosomal axis theory of aging: accumulation of damaged mitochondria as a result of imperfect autophagocytosis.European journal of biochemistry, 269 8
F. Agarraberes, S. Terlecky, J. Dice (1997)
An Intralysosomal hsp70 Is Required for a Selective Pathway of Lysosomal Protein DegradationThe Journal of Cell Biology, 137
A. Petiot, E. Ogier-Denis, C. Bauvy, F. Cluzeaud, A. Vandewalle, P. Codogno (1999)
Subcellular localization of the Galphai3 protein and G alpha interacting protein, two proteins involved in the control of macroautophagy in human colon cancer HT-29 cells.The Biochemical journal, 337 ( Pt 2)
M. Thamotharan, Y. Lombardo, S. Bawani, S. Adibi (1997)
An Active Mechanism for Completion of the Final Stage of Protein Degradation in the Liver, Lysosomal Transport of Dipeptides*The Journal of Biological Chemistry, 272
K. Suzuki, T. Kirisako, Y. Kamada, N. Mizushima, Takeshi Noda, Y. Ohsumi (2001)
The pre‐autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formationThe EMBO Journal, 20
S. Goto, R. Takahashi, Atsushi Kumiyama, Z. Radák, Toshiaki Hayashi, Masaki Takenouchi, Ryoichi Abe (2001)
Implications of Protein Degradation in AgingAnnals of the New York Academy of Sciences, 928
K. Ollinger (2000)
Inhibition of cathepsin D prevents free-radical-induced apoptosis in rat cardiomyocytes.Archives of biochemistry and biophysics, 373 2
Hiromi Takano-Ohmuro, Masahiro Mukaida, Eiki Kominami, Kiyokazu Morioka (2000)
Autophagy in embryonic erythroid cells: its role in maturation.European journal of cell biology, 79 10
M. Komatsu, I. Tanida, T. Ueno, M. Ohsumi, Y. Ohsumi, E. Kominami (2001)
The C-terminal Region of an Apg7p/Cvt2p Is Required for Homodimerization and Is Essential for Its E1 Activity and E1-E2 Complex Formation*The Journal of Biological Chemistry, 276
M. Hoffman, H. Chiang (1996)
Isolation of degradation-deficient mutants defective in the targeting of fructose-1,6-bisphosphatase into the vacuole for degradation in Saccharomyces cerevisiae.Genetics, 143 4
Louis Marzella, J. Ahlberg, Hans Glaumann (1981)
Autophagy, heterophagy, microautophagy and crinophagy as the means for intracellular degradationVirchows Archiv B, 36
Takeshi Noda, John Kim, Wei‐Pang Huang, M. Baba, Chikara Tokunaga, Y. Ohsumi, D. Klionsky (2000)
Apg9p/Cvt7p Is an Integral Membrane Protein Required for Transport Vesicle Formation in the Cvt and Autophagy PathwaysThe Journal of Cell Biology, 148
Wei‐Pang Huang, S. Scott, John Kim, D. Klionsky (2000)
The Itinerary of a Vesicle Component, Aut7p/Cvt5p, Terminates in the Yeast Vacuole via the Autophagy/Cvt Pathways*The Journal of Biological Chemistry, 275
Akiko Kuma, N. Mizushima, Naotada Ishihara, Y. Ohsumi (2002)
Formation of the ∼350-kDa Apg12-Apg5·Apg16 Multimeric Complex, Mediated by Apg16 Oligomerization, Is Essential for Autophagy in Yeast*The Journal of Biological Chemistry, 277
F. Gaits, P. Russell (1999)
Vacuole fusion regulated by protein phosphatase 2C in fission yeast.Molecular biology of the cell, 10 8
A. Cuervo, J. Dice (2000)
Regulation of Lamp2a Levels in the Lysosomal MembraneTraffic, 1
Chao-Wen Wang, D. Klionsky (2003)
The Molecular Mechanism of AutophagyMolecular Medicine, 9
C. Reed (2000)
Diagnostic applications of cystatin C.British journal of biomedical science, 57 4
A. Kihara, Takeshi Noda, Naotada Ishihara, Y. Ohsumi (2001)
Two Distinct Vps34 Phosphatidylinositol 3–Kinase Complexes Function in Autophagy and Carboxypeptidase Y Sorting inSaccharomyces cerevisiaeThe Journal of Cell Biology, 152
S. Elmore, T. Qian, Sherry Grissom, J. Lemasters (2001)
The mitochondrial permeability transition initiates autophagy in rat hepatocytesThe FASEB Journal, 15
S. Terlecky, J. Dice (1993)
Polypeptide import and degradation by isolated lysosomes.The Journal of biological chemistry, 268 31
G. Mortimore, B. Lardeux, C. Adams (1988)
Regulation of microautophagy and basal protein turnover in rat liver. Effects of short-term starvation.The Journal of biological chemistry, 263 5
W. Gevers (1984)
Protein metabolism of the heart.Journal of molecular and cellular cardiology, 16 1
AL Kovacs, G Rez, Z Palfia, J Kovacs (2000)
Autophagy in the epithelial cells of murine seminal vesicle in vitro. Formation of large sheets of nascent isolation membranes, sequestration of the nucleus and inhibition by wortmannin and 3-ethyladenineCell Tissue Res, 302
J. Tupper, P. Bodine (1983)
Calcium effects on epidermal growth factor receptor‐mediated endocytosis in normal and SV40‐transformed human fibroblastsJournal of Cellular Physiology, 115
Joseph Auteri, Annabelle Okada, Victor Bochaki, J. Dice (1983)
Regulation of intracellular protein degradation in IMR‐90 human diploid fibroblastsJournal of Cellular Physiology, 115
E. Hammond, C. Brunet, G. Johnson, Julian Parkhill, A. Milner, G. Brady, C. Gregory, R. Grand (1998)
Homology between a human apoptosis specific protein and the product of APG5, a gene involved in autophagy in yeastFEBS Letters, 425
N. Mizushima, A. Yamamoto, M. Hatano, Yoshinori Kobayashi, Y. Kabeya, Kuninori Suzuki, T. Tokuhisa, Y. Ohsumi, T. Yoshimori (2001)
Dissection of Autophagosome Formation Using Apg5-Deficient Mouse Embryonic Stem CellsThe Journal of Cell Biology, 152
A. Petiot, E. Ogier-Denis, E. Blommaart, A. Meijer, P. Codogno (2000)
Distinct Classes of Phosphatidylinositol 3′-Kinases Are Involved in Signaling Pathways That Control Macroautophagy in HT-29 Cells*The Journal of Biological Chemistry, 275
I. Holen, P. Gordon, P. Seglen (1993)
Inhibition of hepatocytic autophagy by okadaic acid and other protein phosphatase inhibitors.European journal of biochemistry, 215 1
A. Cuervo, Fred Dice (1996)
A Receptor for the Selective Uptake and Degradation of Proteins by LysosomesScience, 273
N. Mizushima, T. Yoshimori, Y. Ohsumi (2003)
Role of the Apg12 conjugation system in mammalian autophagy.The international journal of biochemistry & cell biology, 35 5
P. Codogno, E. Ogier-Denis, J. Houri (1997)
Signal transduction pathways in macroautophagy.Cellular signalling, 9 2
W. Ward (2004)
The relentless effects of the aging process on protein turnoverBiogerontology, 1
A. Barrett, H. Kirschke (1981)
Cathepsin B, Cathepsin H, and cathepsin L.Methods in enzymology, 80 Pt C
Hans Brömme, J. Holtz (1996)
Apoptosis in the heart: when and why?Molecular and Cellular Biochemistry, 163-164
A. Meijer (2003)
Amino acids as regulators and components of nonproteinogenic pathways.The Journal of nutrition, 133 6 Suppl 1
Luzheng Xue, Graham Fletcher, A. Tolkovsky (2001)
Mitochondria are selectively eliminated from eukaryotic cells after blockade of caspases during apoptosisCurrent Biology, 11
I. Tanida, E. Tanida-Miyake, T. Ueno, E. Kominami (2001)
The Human Homolog of Saccharomyces cerevisiae Apg7p Is a Protein-activating Enzyme for Multiple Substrates Including Human Apg12p, GATE-16, GABARAP, and MAP-LC3*The Journal of Biological Chemistry, 276
LM Nepomnyashchikh, EL Lushnikova, DE Semenov (2000)
Focal degrada-tion of cytoplasmic organelles in cardiomyocytes during regenerative and plastic myocardial insufficiencyBull Exp Biol Med, 130
L. Stefanis, K. Larsen, H. Rideout, D. Sulzer, L. Greene (2001)
Expression of A53T Mutant But Not Wild-Type α-Synuclein in PC12 Cells Induces Alterations of the Ubiquitin-Dependent Degradation System, Loss of Dopamine Release, and Autophagic Cell DeathThe Journal of Neuroscience, 21
J. Dice (1990)
Peptide sequences that target cytosolic proteins for lysosomal proteolysis.Trends in biochemical sciences, 15 8
Daniela Munafó, M. Colombo (2002)
Induction of Autophagy Causes Dramatic Changes in the Subcellular Distribution of GFP‐Rab24Traffic, 3
A. Simonsen, A. Wurmser, S. Emr, H. Stenmark (2001)
The role of phosphoinositides in membrane transport.Current opinion in cell biology, 13 4
M. Duque-Magalhaes (1984)
[Intracellular proteolysis].Biochimie, 66 11-12
Antonio Martín, J. Joseph, A. Cuervo (2002)
Stimulatory effect of vitamin C on autophagy in glial cellsJournal of Neurochemistry, 82
Eric Bednarski, G. Lynch (1998)
Selective suppression of cathepsin L results from elevations in lysosomal pH and is followed by proteolysis of tau proteinNeuroReport, 9
A. Donati, G. Cavallini, C. Paradiso, Simona Vittorini, M. Pollera, Z. Gori, Ettore Bergamini (2001)
Age-related changes in the autophagic proteolysis of rat isolated liver cells: effects of antiaging dietary restrictions.The journals of gerontology. Series A, Biological sciences and medical sciences, 56 9
A. Cuervo, H. Hildebrand, E. Bomhard, J. Dice (1999)
Direct lysosomal uptake of alpha 2-microglobulin contributes to chemically induced nephropathy.Kidney international, 55 2
Y. Sakai, A. Koller, Linda Rangell, G. Keller, S. Subramani (1998)
Peroxisome Degradation by Microautophagy in Pichia pastoris: Identification of Specific Steps and Morphological IntermediatesThe Journal of Cell Biology, 141
John Kim, Wei‐Pang Huang, P. Strømhaug, D. Klionsky (2002)
Convergence of Multiple Autophagy and Cytoplasm to Vacuole Targeting Components to a Perivacuolar Membrane Compartment Prior tode Novo Vesicle Formation*The Journal of Biological Chemistry, 277
P. Seglen, P. Gordon, I. Holen (1990)
Non-selective autophagy.Seminars in cell biology, 1 6
T. Squier (2001)
Oxidative stress and protein aggregation during biological agingExperimental Gerontology, 36
C. Thummel (2001)
Steroid-triggered death by autophagy.BioEssays : news and reviews in molecular, cellular and developmental biology, 23 8
F. Agarraberes, J. Dice (2001)
A molecular chaperone complex at the lysosomal membrane is required for protein translocation.Journal of cell science, 114 Pt 13
S. Mordier, C. Deval, D. Béchet, Amina Tassa, M. Ferrara (2000)
Leucine Limitation Induces Autophagy and Activation of Lysosome-dependent Proteolysis in C2C12 Myotubes through a Mammalian Target of Rapamycin-independent Signaling Pathway*The Journal of Biological Chemistry, 275
A. Cuervo, Wei Hu, B. Lim, J. Dice (1998)
IκB Is a Substrate for a Selective Pathway of Lysosomal ProteolysisMolecular Biology of the Cell, 9
Naotada Ishihara, Maho Hamasaki, S. Yokota, Kuninori Suzuki, Y. Kamada, A. Kihara, T. Yoshimori, T. Noda, Y. Ohsumi (2001)
Autophagosome requires specific early Sec proteins for its formation and NSF/SNARE for vacuolar fusion.Molecular biology of the cell, 12 11
T. Ohshita (2000)
Suppression of autophagy by ethionine administration in male rat liver in vivo.Toxicology, 147 1
W. Liou, H. Geuze, M. Geelen, J. Slot (1997)
The Autophagic and Endocytic Pathways Converge at the Nascent Autophagic VacuolesThe Journal of Cell Biology, 136
Randell Brown, Dongying Cui, Graham Hung, H. Chiang (2001)
Cyclophilin A Mediates Vid22p Function in the Import of Fructose-1,6-bisphosphatase into Vid Vesicles*The Journal of Biological Chemistry, 276
A Bellu, M Komori, I van der Klei, J Kiel (2001)
Veenhuis M: Peroxisome biogenesis and selective degradation converge at Pex14pJ Biol Chem, 276
A. Bellu, A. Kram, J. Kiel, M. Veenhuis, I. Klei (2001)
Glucose-induced and nitrogen-starvation-induced peroxisome degradation are distinct processes in Hansenula polymorpha that involve both common and unique genes.FEMS yeast research, 1 1
H. Mukaiyama, Masahide Oku, M. Baba, Takeshi Samizo, A. Hammond, B. Glick, N. Kato, Y. Sakai (2002)
Paz2 and 13 other PAZ gene products regulate vacuolar engulfment of peroxisomes during micropexophagyGenes to Cells, 7
Maria Hutchins, M. Veenhuis, D. Klionsky (1999)
Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway.Journal of cell science, 112 ( Pt 22)
A. Terman, U. Brunk (1998)
Lipofuscin: Mechanisms of formation and increase with ageAPMIS, 106
Takeshi Noda, Kuninori Suzuki, Y. Ohsumi (2002)
Yeast autophagosomes: de novo formation of a membrane structure.Trends in cell biology, 12 5
T. Kirisako, M. Baba, Naotada Ishihara, K. Miyazawa, M. Ohsumi, T. Yoshimori, Takeshi Noda, Y. Ohsumi (1999)
Formation Process of Autophagosome Is Traced with Apg8/Aut7p in YeastThe Journal of Cell Biology, 147
Ana Cuervo, J. Dice, E. Knecht (1997)
A Population of Rat Liver Lysosomes Responsible for the Selective Uptake and Degradation of Cytosolic Proteins*The Journal of Biological Chemistry, 272
Ulrike Epple, I. Suriapranata, E. Eskelinen, M. Thumm (2001)
Aut5/Cvt17p, a Putative Lipase Essential for Disintegration of Autophagic Bodies inside the VacuoleJournal of Bacteriology, 183
Different mechanisms lead to the degradation of intracellular proteins in the lysosomal compartment. Activation of one autophagic pathway or another, under specific cellular conditions, plays an important role in the ability of the cell to adapt to environmental changes. Each form of autophagy has its own individual characteristics, but it also shares common steps and components with the others. This interdependence of the autophagic pathways confers to the lysosomal system, both specificity and flexibility on substrate degradation. We describe in this review some of the recent findings on the molecular basis and regulation for each of the different autophagic pathways. We also discuss the cellular consequences of their interdependent function. Malfunctioning of the autophagic systems has dramatic consequences, especially in non-dividing differentiated cells. Using the heart as an example of such cells, we analyze the relevance of autophagy in aging and cell death, as well as in different pathological conditions. (Mol Cell Biochem 263: 55–72, 2004)
Molecular and Cellular Biochemistry – Springer Journals
Published: Dec 29, 2004
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.