Access the full text.
Sign up today, get DeepDyve free for 14 days.
R. Lister, Mattia Pelizzola, Yasuyuki Kida, R. Hawkins, Joseph Nery, G. Hon, Jessica Antosiewicz-Bourget, Jessica Antosiewicz-Bourget, Ronan O’Malley, R. Castanon, Sarit Klugman, M. Downes, R. Yu, R. Stewart, R. Stewart, B. Ren, Bing-Jie Ren, J. Thomson, R. Evans, J. Ecker (2011)
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cellsNature, 471
Hao Wu, A. D’Alessio, Shinsuke Ito, Zhibin Wang, Kairong Cui, K. Zhao, Y. Sun, Yi Zhang (2011)
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.Genes & development, 25 7
P. Deininger, J. Moran, M. Batzer, H. Kazazian (2003)
Mobile elements and mammalian genome evolution.Current opinion in genetics & development, 13 6
R. Lister, Mattia Pelizzola, Robert Dowen, R. Hawkins, G. Hon, Julian Tonti-Filippini, Joseph Nery, Leonard Lee, Z. Ye, Queminh Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Jessica Antosiewicz-Bourget, R. Stewart, R. Stewart, Victor Ruotti, Victor Ruotti, A. Millar, J. Thomson, Bing-Jie Ren, B. Ren, J. Ecker (2009)
Human DNA methylomes at base resolution show widespread epigenomic differencesNature, 462
H. Zoghbi (2003)
Postnatal Neurodevelopmental Disorders: Meeting at the Synapse?Science, 302
D. Song, G. Chalepakis, P. Gruss, A. Joyner (1996)
Two Pax-binding sites are required for early embryonic brain expression of an Engrailed-2 transgene.Development, 122 2
A. Riccio (2010)
Dynamic epigenetic regulation in neurons: enzymes, stimuli and signaling pathwaysNature Neuroscience, 13
K. Martinowich, Daisuke Hattori, Hao Wu, S. Fouse, Fei He, Yan Hu, G. Fan, Y. Sun (2003)
DNA Methylation-Related Chromatin Remodeling in Activity-Dependent Bdnf Gene RegulationScience, 302
Chun-Xiao Song, Keith Szulwach, Ye Fu, Qing Dai, C. Yi, Xuekun Li, Yujing Li, Chih-Hsin Chen, Wen Zhang, Xing Jian, Jing Wang, Li Zhang, T. Looney, Baicheng Zhang, L. Godley, L. Hicks, B. Lahn, P. Jin, Chuan He (2011)
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosineNature Biotechnology, 29
D. Emig, N. Salomonis, J. Baumbach, Thomas Lengauer, B. Conklin, M. Albrecht (2010)
AltAnalyze and DomainGraph: analyzing and visualizing exon expression dataNucleic Acids Research, 38
Zhaolan Zhou, Elizabeth Hong, Sonia Cohen, Wen-Ning Zhao, H. Ho, L. Schmidt, Wen Chen, Yingxi Lin, Erin Savner, Eric Griffith, Linda Hu, J. Steen, C. Weitz, M. Greenberg (2006)
Brain-Specific Phosphorylation of MeCP2 Regulates Activity-Dependent Bdnf Transcription, Dendritic Growth, and Spine MaturationNeuron, 52
M. Figueroa, O. Abdel-Wahab, Chao Lu, P. Ward, Jay Patel, A. Shih, Yushan Li, N. Bhagwat, A. Vasanthakumar, H. Fernandez, M. Tallman, Zhuoxin Sun, K. Wolniak, J. Peeters, Wei Liu, S. Choe, V. Fantin, E. Paietta, B. Löwenberg, J. Licht, L. Godley, R. Delwel, P. Valk, C. Thompson, R. Levine, A. Melnick (2010)
Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation.Cancer cell, 18 6
A. Muotri, M. Marchetto, N. Coufal, Ruth Oefner, Gene Yeo, K. Nakashima, F. Gage (2010)
L1 retrotransposition in neurons is modulated by MeCP2Nature, 468
Hao Wu, A. D’Alessio, Shinsuke Ito, K. Xia, Zhibin Wang, Kairong Cui, K. Zhao, Y. Sun, Yi Zhang (2011)
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cellsNature, 473
(2009)
Quantification of 5-hmC-specific immunoblot from 6-8-week-old wild-type (WT), Mecp2 -/y cerebellum
A. Collins, J. Levenson, Alexander Vilaythong, R. Richman, D. Armstrong, J. Noebels, J. Sweatt, H. Zoghbi (2004)
Mild overexpression of MeCP2 causes a progressive neurological disorder in mice.Human molecular genetics, 13 21
D. Huang, Brad Sherman, R. Lempicki (2008)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesNature Protocols, 4
K. Williams, J. Christensen, M. Pedersen, J. Johansen, P. Cloos, J. Rappsilber, K. Helin (2011)
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelityNature, 473
Kian Koh, A. Yabuuchi, Sridhar Rao, Yun Huang, K. Cunniff, J. Nardone, A. Laiho, Mamta Tahiliani, C. Sommer, G. Mostoslavsky, R. Lahesmaa, S. Orkin, S. Rodig, G. Daley, A. Rao (2011)
Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.Cell stem cell, 8 2
Richard Chen, S. Akbarian, M. Tudor, R. Jaenisch (2001)
Deficiency of methyl-CpG binding protein-2 in CNS neurons results in a Rett-like phenotype in miceNature Genetics, 27
Mamta Tahiliani, Kian Koh, Yinghua Shen, William Pastor, Hozefa Bandukwala, Y. Brudno, Suneet Agarwal, L. Iyer, David Liu, L. Aravind, A. Rao (2009)
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1Science, 324
D. Globisch, M. Münzel, Markus Müller, S. Michalakis, M. Wagner, S. Koch, Tobias Brückl, M. Biel, T. Carell (2010)
Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation IntermediatesPLoS ONE, 5
P. Skene, Robert Illingworth, Shaun Webb, Alastair Kerr, K. James, D. Turner, R. Andrews, A. Bird (2010)
Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.Molecular cell, 37 4
C. Feschotte (2008)
Transposable elements and the evolution of regulatory networksNature Reviews Genetics, 9
William Pastor, William Pastor, U. Pape, U. Pape, Yun Huang, H. Henderson, H. Henderson, R. Lister, M. Ko, E. Mcloughlin, Y. Brudno, S. Mahapatra, P. Kapranov, Mamta Tahiliani, Mamta Tahiliani, G. Daley, X. Liu, J. Ecker, P. Milos, Suneet Agarwal, A. Rao, A. Rao (2011)
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cellsNature, 473
Keith Szulwach, Xuekun Li, Yujing Li, Chun-Xiao Song, J. Han, Sangsung Kim, Sandeep Namburi, K. Hermetz, Julie Kim, M. Rudd, Y. Yoon, Bing-Jie Ren, B. Ren, Chuan He, P. Jin (2011)
Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem CellsPLoS Genetics, 7
C. Lengner, A. Gimelbrant, J. Erwin, A. Cheng, M. Guenther, G. Welstead, R. Alagappan, G. Frampton, P. Xu, J. Muffat, S. Santagata, D. Powers, C. Barrett, R. Young, Jeannie Lee, R. Jaenisch, M. Mitalipova (2010)
Derivation of Pre-X Inactivation Human Embryonic Stem Cells under Physiological Oxygen ConcentrationsCell, 141
R. Jaenisch, A. Bird (2003)
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signalsNature Genetics, 33 Suppl 1
Erika Nelson, E. Kavalali, L. Monteggia (2008)
Activity-Dependent Suppression of Miniature Neurotransmission through the Regulation of DNA MethylationThe Journal of Neuroscience, 28
Jacky Guy, B. Hendrich, M. Holmes, Joanne Martin, A. Bird (2001)
A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndromeNature Genetics, 27
A. Muotri, V. Chu, M. Marchetto, Wei Deng, J. Moran, F. Gage (2005)
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotranspositionNature, 435
Keith Szulwach, Xuekun Li, Richard Smrt, Yujing Li, Yuping Luo, Li Lin, Nicholas Santistevan, Wendi Li, Xinyu Zhao, P. Jin (2010)
Cross talk between microRNA and epigenetic regulation in adult neurogenesisThe Journal of Cell Biology, 189
C. McGraw, Rodney Samaco, H. Zoghbi (2011)
Adult Neural Function Requires MeCP2Science, 333
Dengke Ma, M. Jang, Junjie Guo, Yasuji Kitabatake, Min-lin Chang, Nattapol Pow-anpongkul, R. Flavell, B. Lu, G. Ming, Hongjun Song (2009)
Neuronal Activity–Induced Gadd45b Promotes Epigenetic DNA Demethylation and Adult NeurogenesisScience, 323
Courtney Miller, J. Sweatt (2008)
Covalent Modification of DNA Regulates Memory FormationNeuron, 59
Vincent, Wilson, Ruth Smith, Shuyi Mag, R. Cutler (1987)
Genomic 5-methyldeoxycytidine decreases with age.The Journal of biological chemistry, 262 21
Victoria Valinluck, Hsin-hao Tsai, Daniel Rogstad, A. Burdzy, A. Bird, L. Sowers (2004)
Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).Nucleic acids research, 32 14
N. Coufal, J. García-Pérez, Grace Peng, Gene Yeo, Yangling Mu, Michael Lovci, M. Morell, K. O'shea, J. Moran, F. Gage (2009)
L1 retrotransposition in human neural progenitor cellsNature, 460
Wen Chen, Q. Chang, Yingxi Lin, A. Meissner, A. West, Eric Griffith, R. Jaenisch, M. Greenberg (2003)
Derepression of BDNF Transcription Involves Calcium-Dependent Phosphorylation of MeCP2Science, 302
W. Xu, Hui Yang, Ying Liu, Ying Yang, ping wang, Se-Hee Kim, Shinsuke Ito, Chen Yang, Pu Wang, Mengtao Xiao, Lixia Liu, Wenyuan Jiang, Jing Liu, Jinye Zhang, Bin Wang, S. Frye, Yi Zhang, Yanhui Xu, Q. Lei, K. Guan, Shimin Zhao, Y. Xiong (2011)
Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.Cancer cell, 19 1
A. Hellman, A. Chess (2007)
Gene Body-Specific Methylation on the Active X ChromosomeScience, 315
M. Ko, M. Ko, Yun Huang, Yun Huang, A. Jankowska, U. Pape, U. Pape, Mamta Tahiliani, Hozefa Bandukwala, Jungeun An, Jungeun An, E. Lamperti, Kian Koh, R. Ganetzky, X. Liu, L. Aravind, Suneet Agarwal, J. Maciejewski, A. Rao, A. Rao (2010)
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2Nature, 468
R. Amir, I. Veyver, Mimi Wan, Charles Tran, U. Francke, H. Zoghbi (1999)
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2Nature Genetics, 23
Maria Chahrour, H. Zoghbi (2007)
The Story of Rett Syndrome: From Clinic to NeurobiologyNeuron, 56
B. Kuemerle, H. Zanjani, A. Joyner, K. Herrup (1997)
Pattern Deformities and Cell Loss in Engrailed-2Mutant Mice Suggest Two Separate Patterning Events during Cerebellar DevelopmentThe Journal of Neuroscience, 17
S. Kriaucionis, N. Heintz (2009)
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the BrainScience, 324
G. Ficz, Miguel Branco, Stefanie Seisenberger, Fátima Santos, Felix Krueger, T. Hore, C. Marques, S. Andrews, W. Reik (2011)
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiationNature, 473
Shinsuke Ito, A. D’Alessio, O. Taranova, Kwonho Hong, L. Sowers, Yi Zhang (2010)
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specificationNature, 466
L. Hutnick, P. Golshani, Masakasu Namihira, Zhigang Xue, A. Matynia, X. Yang, Alcino Silva, F. Schweizer, G. Fan (2009)
DNA hypomethylation restricted to the murine forebrain induces cortical degeneration and impairs postnatal neuronal maturation.Human molecular genetics, 18 15
J. Day, D. Sweatt (2010)
DNA methylation and memory formationNature Neuroscience, 13
G. Neri (2003)
Faculty Opinions recommendation of Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals.
Yong Zhang, Tao Liu, Clifford Meyer, J. Eeckhoute, David Johnson, B. Bernstein, C. Nusbaum, R. Myers, Myles Brown, Wei Li, X. Liu (2008)
Model-based Analysis of ChIP-Seq (MACS)Genome Biology, 9
DNA methylation in the context of epigenetics occurs on the 5' position of cytosine, which can be further oxidized by enzymes from the Ten-eleven translocation (Tet) family, resulting in 5-hydroxymethylcytosine (5-hmC). In the context of embryonic stem cells, Tet and 5-hmC DNA act in an alternate epigenetic state that regulates epigenetic programming and stem cell differentiation. Here, the authors describe the epigenomic profiling of 5-hmC in mouse and human brain across different time periods during development and aging.
Nature Neuroscience – Springer Journals
Published: Oct 30, 2011
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.