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M. Magidin, J. Pittman, K. Hirschi, B. Bartel (2003)
ILR2, a novel gene regulating IAA conjugate sensitivity and metal transport in Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 35 4
G. Haughn, C. Somerville (1986)
Sulfonylurea-resistant mutants of Arabidopsis thalianaMolecular and General Genetics MGG, 204
2004) compiled microarray data + standard errors
Y. Tam, Ephraim Epstein, Jennifer Normanly (2000)
Characterization of auxin conjugates in Arabidopsis. Low steady-state levels of indole-3-acetyl-aspartate, indole-3-acetyl-glutamate, and indole-3-acetyl-glucose.Plant physiology, 123 2
A. Woodward, B. Bartel (2005)
Auxin: regulation, action, and interaction.Annals of botany, 95 5
John Quackenbush, Jennifer Cho, Daniel Lee, F. Liang, I. Holt, S. Karamycheva, Babak Parvizi, G. Pertea, R. Sultana, Joseph White (2001)
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic speciesNucleic acids research, 29 1
M. Cummings (2004)
PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]Dictionary of Bioinformatics and Computational Biology
M. Buck, W. Atchley (2003)
Phylogenetic Analysis of Plant Basic Helix-Loop-Helix ProteinsJournal of Molecular Evolution, 56
Emmanuel Delhaize (1996)
A Metal-Accumulator Mutant of Arabidopsis thaliana, 111
C. Bell, J. Ecker (1994)
Assignment of 30 microsatellite loci to the linkage map of Arabidopsis.Genomics, 19 1
M. Ema, K. Hirota, J. Mimura, Hisaku Abe, J. Yodoi, K. Sogawa, L. Poellinger, Y. Fujii‐Kuriyama (1999)
Molecular mechanisms of transcription activation by HLF and HIF1α in response to hypoxia: their stabilization and redox signal‐induced interaction with CBP/p300The EMBO Journal, 18
R. Jefferson, T. Kavanagh, M. Bevan (1987)
GUS fusions: beta‐glucuronidase as a sensitive and versatile gene fusion marker in higher plants.The EMBO Journal, 6
F. Ausubel, R. Brent, R. Kingston, D. Moore, J. Seidman, Jennifer Smith, K. Struhl, G. Barry (1988)
Current Protocols in Molecular Biology (New York: Greene Publishing Associates and Wiley-Interscience). Host-Range Shuttle System for Gene Insertion into the Chromosomes of Gram-negative Bacteria., 71
S. Clough, A. Bent (1998)
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 16 6
and homolog tissue expression profiles. Bars represent average expression signal from
S. LeClere, Rebekah Rampey, B. Bartel (2004)
IAR 4 , a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis , Encodes a Pyruvate Dehydrogenase E 1 a Homolog 1
Bonnie Bartel, Gerald Fink (1994)
Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America, 91 14
D. Eide, M. Broderius, J. Fett, M. Guerinot (1996)
A novel iron-regulated metal transporter from plants identified by functional expression in yeast.Proceedings of the National Academy of Sciences of the United States of America, 93 11
S. LeClere, Rebekah Rampey, B. Bartel (2004)
IAR4, a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis, Encodes a Pyruvate Dehydrogenase E1α Homolog1Plant Physiology, 135
Ying Yi, M. Guerinot (1996)
Genetic evidence that induction of root Fe(III) chelate reductase activity is necessary for iron uptake under iron deficiency.The Plant journal : for cell and molecular biology, 10 5
Y. Fujitani, Y. Kajimoto, T. Yasuda, T. Matsuoka, H. Kaneto, Y. Umayahara, N. Fujita, H. Watada, J. Miyazaki, Y. Yamasaki, M. Hori (1999)
Identification of a Portable Repression Domain and an E1A-Responsive Activation Domain in Pax4: a Possible Role of Pax4 as a Transcriptional Repressor in the PancreasMolecular and Cellular Biology, 19
A. Delauney, C. Cheon, P. Snyder, D. Verma (1990)
A nodule-specific sequence encoding a methionine-rich polypeptide, nodulin-21Plant Molecular Biology, 14
Elena Titarenko, Enrique Rojo, José León, J. Sánchez-Serrano (1997)
Jasmonic Acid-Dependent and -Independent Signaling Pathways Control Wound-Induced Gene Activation in Arabidopsis thaliana, 115
S. LeClere, R. Téllez, Rebekah Rampey, S. Matsuda, B. Bartel (2002)
Characterization of a Family of IAA-Amino Acid Conjugate Hydrolases from Arabidopsis*The Journal of Biological Chemistry, 277
Elizabeth Colangelo, M. Guerinot (2004)
The Essential Basic Helix-Loop-Helix Protein FIT1 Is Required for the Iron Deficiency ResponseThe Plant Cell Online, 16
D. Fu, T. Beeler, T. Dunn (1994)
XII. Yeast sequencing reports. Sequence, mapping and disruption of CCC1, a gene that cross‐complements the Ca2+‐sensitive phenotype of csg1 mutantsYeast, 10
Robert Finn, Jaina Mistry, John Tate, Penny Coggill, Andreas Heger, Joanne Pollington, O. Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik Sonnhammer, Sean Eddy, Alex Bateman (2007)
The Pfam protein families databaseNucleic Acids Research, 38
Jamie Lasswell, Luise Rogg, David Nelson, Catherine Rongey, B. Bartel (2000)
Cloning and Characterization of IAR1, a Gene Required for Auxin Conjugate Sensitivity in ArabidopsisPlant Cell, 12
G. Vert, N. Grotz, F. Dédaldéchamp, F. Gaymard, M. Guerinot, J. Briat, C. Curie (2002)
IRT1, an Arabidopsis Transporter Essential for Iron Uptake from the Soil and for Plant Growth Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001388.The Plant Cell Online, 14
E. Rogers, M. Guerinot (2002)
FRD3, a Member of the Multidrug and Toxin Efflux Family, Controls Iron Deficiency Responses in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001495.The Plant Cell Online, 14
Alfred Fisher, S. Ohsako, M. Caudy (1996)
The WRPW motif of the hairy-related basic helix-loop-helix repressor proteins acts as a 4-amino-acid transcription repression and protein-protein interaction domainMolecular and Cellular Biology, 16
J. Alonso, A. Stepanova, Thomas Leisse, Christopher Kim, Huaming Chen, P. Shinn, Denise Stevenson, J. Zimmerman, Pascual Barajas, Rosa Cheuk, Carmelita Gadrinab, Collen Heller, Albert Jeske, Eric Koesema, Cristina Meyers, Holly Parker, Lance Prednis, Yasser Ansari, Nathan Choy, Hashim Deen, M. Geralt, N. Hazari, Emily Hom, Meagan Karnes, C. Mulholland, Ral Ndubaku, Ian Schmidt, P. Guzmán, Laura Aguilar-Henonin, M. Schmid, D. Weigel, D. Carter, T. Marchand, E. Risseeuw, Debra Brogden, Albana Zeko, W. Crosby, C. Berry, J. Ecker (2003)
Genome-Wide Insertional Mutagenesis of Arabidopsis thalianaScience, 301
Liping Huang, Catherine Kirschke, Yunfan Zhang, Y. Yu (2005)
The ZIP7 Gene (Slc39a7) Encodes a Zinc Transporter Involved in Zinc Homeostasis of the Golgi Apparatus*Journal of Biological Chemistry, 280
Michael Neff, Joseph Neff, Joanne Chory, Alan Pepper (1998)
dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics.The Plant journal : for cell and molecular biology, 14 3
R. Sato, Jianxin Yang, Xiaodong Wang, M. Evans, Y. Ho, J. Goldstein, Michael Brown (1994)
Assignment of the membrane attachment, DNA binding, and transcriptional activation domains of sterol regulatory element-binding protein-1 (SREBP-1).The Journal of biological chemistry, 269 25
T. Stasinopoulos, R. Hangarter (1990)
Preventing photochemistry in culture media by long-pass light filters alters growth of cultured tissues.Plant physiology, 93 4
R. Franks, S. Crews (1994)
Transcriptional activation domains of the single-minded bHLH protein are required for CNS midline cell developmentMechanisms of Development, 45
A. Woodward, B. Bartel (2004)
The Arabidopsis peroxisomal targeting signal type 2 receptor PEX7 is necessary for peroxisome function and dependent on PEX5.Molecular biology of the cell, 16 2
P. Lapinskas, Su-Ju Lin, V. Culotta (1996)
The role of the Saccharomyces cerevisiae CCC1 gene in the homeostasis of manganese ionsMolecular Microbiology, 21
A. Gerber, T. Klesert, D. Bergstrom, S. Tapscott (1997)
Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: a mechanism for lineage determination in myogenesis.Genes & development, 11 4
Brett Lahner, Jiming Gong, M. Mahmoudian, Ellen Smith, Khush Abid, E. Rogers, M. Guerinot, J. Harper, J. Ward, L. McIntyre, J. Schroeder, D. Salt (2003)
Genomic scale profiling of nutrient and trace elements in Arabidopsis thalianaNature Biotechnology, 21
Rebekah Rampey, S. LeClere, M. Kowalczyk, K. Ljung, G. Sandberg, B. Bartel (2004)
A Family of Auxin-Conjugate Hydrolases That Contributes to Free Indole-3-Acetic Acid Levels during Arabidopsis Germination1Plant Physiology, 135
K. Białek, J. Cohen (1992)
Amide-Linked Indoleacetic Acid Conjugates May Control Levels of Indoleacetic Acid in Germinating Seedlings of Phaseolus vulgaris.Plant physiology, 100 4
A. Walz, Seijin Park, J. Slovin, J. Ludwig-Müller, Y. Momonoki, J. Cohen (2002)
A gene encoding a protein modified by the phytohormone indoleacetic acidProceedings of the National Academy of Sciences of the United States of America, 99
P. Bailey, Cathie Martin, Gabriela Toledo‐Ortiz, P. Quail, E. Huq, Marc Heim, M. Jakoby, Martin Werber, B. Weisshaar (2003)
Update on the Basic Helix-Loop-Helix Transcription Factor Gene Family in Arabidopsis thalianaThe Plant Cell Online, 15
D. Fu, T. Beeler, T. Dunn (1994)
Sequence, mapping and disruption of CCC1, a gene that cross-complements the Ca(2+)-sensitive phenotype of csg1 mutants.Yeast, 10 4
Marc Heim, M. Jakoby, Martin Werber, Cathie Martin, B. Weisshaar, P. Bailey (2003)
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.Molecular biology and evolution, 20 5
S. Michaels, R. Amasino (1998)
A robust method for detecting single-nucleotide changes as polymorphic markers by PCR.The Plant journal : for cell and molecular biology, 14 3
M. Kowalczyk, G. Sandberg (2001)
Quantitative analysis of indole-3-acetic acid metabolites in Arabidopsis.Plant physiology, 127 4
B. Bartel, G. Fink (1995)
ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.Science, 268 5218
Arabidopsis FIT1 is a bHLH protein without a leucine zipper included for comparison
Expression data are shown for entire seedlings
C. Koncz, J. Schell, G. Rédei, N. Chua (1992)
T-DNA transformation and insertion mutagenesis.
Liangtao Li, O. Chen, D. Ward, J. Kaplan (2001)
CCC1 Is a Transporter That Mediates Vacuolar Iron Storage in Yeast*The Journal of Biological Chemistry, 276
Yuko Sasaki, E. Asamizu, D. Shibata, Yasukazu Nakamura, T. Kaneko, K. Awai, Masayuki Amagai, C. Kuwata, T. Tsugane, T. Masuda, H. Shimada, K. Takamiya, H. Ohta, S. Tabata (2001)
Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways.DNA research : an international journal for rapid publication of reports on genes and genomes, 8 4
The bootstrap method was performed for 1000 replicates with a distance optimality criterion, and all characters were weighted equally
Rosie Davies, D. Goetz, Jamie Lasswell, Mindy Anderson, B. Bartel (1999)
IAR3 Encodes an Auxin Conjugate Hydrolase from ArabidopsisPlant Cell, 11
S. LeClere, B. Bartel (2001)
A library of Arabidopsis 35S-cDNA lines for identifying novel mutantsPlant Molecular Biology, 46
Pt, from the TIGR Gene Index Database; QUACKENBUSH et al. 2001) as described in panel (A). The unrooted phylogram was generated using
A. Konieczny, F. Ausubel (1993)
A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers.The Plant journal : for cell and molecular biology, 4 2
R. Last, G. Fink (1988)
Tryptophan-Requiring Mutants of the Plant Arabidopsis thalianaScience, 240
Gabriela Toledo‐Ortiz, E. Huq, P. Quail (2003)
The Arabidopsis Basic/Helix-Loop-Helix Transcription Factor Family Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.013839.The Plant Cell Online, 15
Philip Zimmermann, Matthias Hirsch-Hoffmann, L. Hennig, W. Gruissem (2004)
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w]Plant Physiology, 136
Liping Huang, Catherine Kirschke, Yunfan Zhang, Y. Yu (2005)
ZIP 7 gene ( Slc 39 a 7 ) encodes a zinc transporter involved in zinc homeostasis of the Golgi apparatus
The plant hormone auxin can be regulated by formation and hydrolysis of amide-linked indole-3-acetic acid (IAA) conjugates. Here, we report the characterization of the dominant Arabidopsis iaa–leucine resistant3 (ilr3-1) mutant, which has reduced sensitivity to IAA–Leu and IAA–Phe, while retaining wild-type responses to free IAA. The gene defective in ilr3-1 encodes a basic helix-loop-helix leucine zipper protein, bHLH105, and the ilr3-1 lesion results in a truncated product. Overexpressing ilr3-1 in wild-type plants recapitulates certain ilr3-1 mutant phenotypes. In contrast, the loss-of-function ilr3-2 allele has increased IAA–Leu sensitivity compared to wild type, indicating that the ilr3-1 allele confers a gain of function. Microarray and quantitative real-time PCR analyses revealed five downregulated genes in ilr3-1, including three encoding putative membrane proteins similar to the yeast iron and manganese transporter Ccc1p. Transcript changes are accompanied by reciprocally misregulated metal accumulation in ilr3-1 and ilr3-2 mutants. Further, ilr3-1 seedlings are less sensitive than wild type to manganese, and auxin conjugate response phenotypes are dependent on exogenous metal concentration in ilr3 mutants. These data suggest a model in which the ILR3/bHLH105 transcription factor regulates expression of metal transporter genes, perhaps indirectly modulating IAA-conjugate hydrolysis by controlling the availability of metals previously shown to influence IAA–amino acid hydrolase protein activity.
Genetics – Oxford University Press
Published: Dec 1, 2006
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