Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/unpaywall/beyond-the-sequence-cellular-organization-of-genome-function-o4ReKW1D1k
References (153)
-
J. Vecerova, K. Koberna, J. Malínský, E. Soutoglou, Teresa Sullivan, C. Stewart, I. Raška, T. Misteli (2004)
Formation of nuclear splicing factor compartments is independent of lamins A/C.Molecular biology of the cell, 15 11
-
H. Würtele, P. Chartrand (2006)
Genome-wide scanning of HoxB1-associated loci in mouse ES cells using an open-ended Chromosome Conformation Capture methodologyChromosome Research, 14
-
Justin O’Sullivan, Sue Tan-Wong, Antonin Morillon, Barbara Lee, Joel Coles, J. Mellor, N. Proudfoot (2004)
Gene loops juxtapose promoters and terminators in yeastNature Genetics, 36
-
T. Ragoczy, M. Bender, A. Telling, Rachel Byron, M. Groudine (2006)
The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation.Genes & development, 20 11
-
G. Stein, D. Matthews (1973)
Nonhistone Chromosomal Protein Synthesis: Utilization of Preexisting and Newly Transcribed Messenger RNA'sScience, 181
-
H. Pickersgill, B. Kalverda, E. Wit, W. Talhout, M. Fornerod, B. Steensel (2006)
Characterization of the Drosophila melanogaster genome at the nuclear laminaNature Genetics, 38
-
Darin McDonald, Gustavo Carrero, C. Andrin, G. Vries, M. Hendzel (2006)
Nucleoplasmic β-actin exists in a dynamic equilibrium between low-mobility polymeric species and rapidly diffusing populationsThe Journal of Cell Biology, 172
-
J. Levsky, R. Singer (2003)
Gene expression and the myth of the average cell.Trends in cell biology, 13 1
-
M. Becker, C. Baumann, S. John, D. Walker, M. Vigneron, J. McNally, G. Hager (2002)
Dynamic behavior of transcription factors on a natural promoter in living cellsEMBO reports, 3
-
J. McNally, W. Müller, D. Walker, R. Wolford, G. Hager (2000)
The glucocorticoid receptor: rapid exchange with regulatory sites in living cells.Science, 287 5456
-
J. Haber, W. Leung (1996)
Lack of chromosome territoriality in yeast: promiscuous rejoining of broken chromosome ends.Proceedings of the National Academy of Sciences of the United States of America, 93 24
-
Ruth Williams, S. Broad, D. Sheer, J. Ragoussis (2002)
Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei.Experimental cell research, 272 2
-
F. Ent, A. Wijnen, T. Last, R. Bortell, J. Stein, J. Lian, G. Stein (1993)
Concerted control of multiple histone promoter factors during cell density inhibition of proliferation in osteosarcoma cells: reciprocal regulation of cell cycle-controlled and bone-related genes.Cancer research, 53 10 Suppl
-
E. Lukášová, S. Kozubek, M. Kozubek, Jana Kjeronská, L. Rýznar, J. Horáková, E. Krahulcová, G. Horneck (1997)
Localisation and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukaemiaHuman Genetics, 100
-
H. D'anjou, C. Chabot, P. Chartrand (2004)
Preferential accessibility to specific genomic loci for the repair of double-strand breaks in human cells.Nucleic acids research, 32 20
-
T. Spann, R. Moir, A. Goldman, R. Stick, R. Goldman (1997)
Disruption of Nuclear Lamin Organization Alters the Distribution of Replication Factors and Inhibits DNA SynthesisThe Journal of Cell Biology, 136
-
J. Holthuis, T. Owen, A. Wijnen, K. Wright, A. Ramsey‐Ewing, M. Kennedy, R. Carter, S. Cosenza, K. Soprano, J. Lian (1990)
Tumor cells exhibit deregulation of the cell cycle histone gene promoter factor HiNF-D.Science, 247 4949 Pt 1
-
A. Sporbert, A. Gahl, R. Ankerhold, Heinrich Leonhardt, Heinrich Leonhardt, M. Cardoso (2002)
DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters.Molecular cell, 10 6
-
T. Owen, J. Holthuis, E. Markose, A. Wijnen, S. Wolfe, S. Grimes, J. Lian, G. Stein (1990)
Modifications of protein-DNA interactions in the proximal promoter of a cell-growth-regulated histone gene during onset and progression of osteoblast differentiation.Proceedings of the National Academy of Sciences of the United States of America, 87 13
-
Sabine Görisch, M. Wachsmuth, K. Toth, P. Lichter, K. Rippe (2005)
Histone acetylation increases chromatin accessibilityJournal of Cell Science, 118
-
M. Gartenberg, F. Neumann, T. Laroche, Marek Blaszczyk, S. Gasser (2004)
Sir-Mediated Repression Can Occur Independently of Chromosomal and Subnuclear ContextsCell, 119
-
R. Festenstein, S. Pagakis, K. Hiragami, Debbie Lyon, A. Verreault, B. Sekkali, D. Kioussis (2003)
Modulation of Heterochromatin Protein 1 Dynamics in Primary Mammalian CellsScience, 299
-
E. Volpi, E. Chevret, T. Jones, R. Vatcheva, J. Williamson, Stephan Beck, R. Campbell, M. Goldsworthy, S. Powis, J. Ragoussis, J. Trowsdale, D. Sheer (2000)
Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei.Journal of cell science, 113 ( Pt 9)
-
Congmei Zeng, A. Wijnen, J. Stein, S. Meyers, Wuhua Sun, L. Shopland, J. Lawrence, S. Penman, J. Lian, G. Stein, S. Hiebert (1997)
Identification of a nuclear matrix targeting signal in the leukemia and bone-related AML/CBF-alpha transcription factors.Proceedings of the National Academy of Sciences of the United States of America, 94 13
-
G. Karpen, J. Schaefer, C. Laird (1988)
A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation.Genes & development, 2 12B
-
R. Driel, P. Fransz, P. Verschure (2003)
The eukaryotic genome: a system regulated at different hierarchical levelsJournal of Cell Science, 116
-
G. Hager, C. Elbi, M. Becker (2002)
Protein dynamics in the nuclear compartment.Current opinion in genetics & development, 12 2
-
S. Gorski, T. Misteli (2005)
Systems biology in the cell nucleusJournal of Cell Science, 118
-
K. Byrd, V. Corces (2003)
Visualization of chromatin domains created by the gypsy insulator of DrosophilaThe Journal of Cell Biology, 162
-
S. Chrysogelos, D. Riley, G. Stein, J. Stein (1985)
A human histone H4 gene exhibits cell cycle-dependent changes in chromatin structure that correlate with its expression.Proceedings of the National Academy of Sciences of the United States of America, 82 22
-
P. Verschure, I. Kraan, E. Manders, D. Hoogstraten, A. Houtsmuller, R. Driel (2003)
Condensed chromatin domains in the mammalian nucleus are accessible to large macromoleculesEMBO reports, 4
-
P. Fraser (2006)
Transcriptional control thrown for a loop.Current opinion in genetics & development, 16 5
-
S. Cai, Hye-jung Han, T. Kohwi-Shigematsu (2003)
Tissue-specific nuclear architecture and gene expession regulated by SATB1Nature Genetics, 34
-
A. Javed, G. Barnes, Jitesh Pratap, Tomasz Antkowiak, L. Gerstenfeld, A. Wijnen, J. Stein, J. Lian, G. Stein (2005)
Impaired intranuclear trafficking of Runx2 (AML3/CBFA1) transcription factors in breast cancer cells inhibits osteolysis in vivo.Proceedings of the National Academy of Sciences of the United States of America, 102 5
-
F. Marashi, L. Baumbach, R. Rickles, F. Sierra, J. Stein, G. Stein (1982)
Histone proteins in HeLa S3 cells are synthesized in a cell cycle stage specific manner.Science, 215 4533
-
Simon Bekker-Jensen, C. Lukas, R. Kitagawa, Fredrik Melander, M. Kastan, J. Bartek, J. Lukas (2006)
Spatial organization of the mammalian genome surveillance machinery in response to DNA strand breaksThe Journal of Cell Biology, 173
-
M. Wijgerde, F. Grosveld, P. Fraser (1995)
Transcription complex stability and chromatin dynamics in vivoNature, 377
-
H. Soula, C. Robardet, François Perrin, Sébastien Gripon, G. Beslon, O. Gandrillon (2005)
Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based softwareBMC Bioinformatics, 6
-
Daniel Young, Mohammad Hassan, Jitesh Pratap, M. Galindo, S. Zaidi, Suk-hee Lee, Xiaoqing Yang, Rong-lin Xie, A. Javed, J. Underwood, P. Furcinitti, A. Imbalzano, S. Penman, J. Nickerson, M. Montecino, J. Lian, J. Stein, A. Wijnen, G. Stein (2007)
Mitotic occupancy and lineage-specific transcriptional control of rRNA genes by Runx2Nature, 445
-
A. Politi, M. Moné, A. Houtsmuller, D. Hoogstraten, W. Vermeulen, R. Heinrich, R. Driel (2005)
Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies.Molecular cell, 19 5
-
Robert-Jan Palstra, B. Tolhuis, E. Splinter, R. Nijmeijer, F. Grosveld, W. Laat (2003)
The beta-globin nuclear compartment in development and erythroid differentiation.Nature genetics, 35 2
-
A. Boutanaev, L. Mikhaylova, D. Nurminsky (2005)
The Pattern of Chromosome Folding in Interphase Is Outlined by the Linear Gene Density ProfileMolecular and Cellular Biology, 25
-
T. Misteli (2001)
The concept of self-organization in cellular architectureThe Journal of Cell Biology, 155
-
Zhihu Zhao, Gholamreza Tavoosidana, M. Sjölinder, A. Göndör, P. Mariano, Sha Wang, C. Kanduri, M. Lezcano, K. Sandhu, U. Singh, V. Pant, V. Tiwari, Sreenivasulu Kurukuti, R. Ohlsson (2006)
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactionsNature Genetics, 38
-
N. Gilbert, S. Boyle, H. Fiegler, K. Woodfine, N. Carter, W. Bickmore (2004)
Chromatin Architecture of the Human Genome Gene-Rich Domains Are Enriched in Open Chromatin FibersCell, 118
-
Pierre Therizols, C. Fairhead, Ghislain Cabal, Auguste Genovesio, Jean-Christophe Olivo-Marin, B. Dujon, E. Fabre (2006)
Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric regionThe Journal of Cell Biology, 172
-
T. Cremer, M. Cremer, S. Dietzel, S. Müller, I. Solovei, S. Fakan (2006)
Chromosome territories--a functional nuclear landscape.Current opinion in cell biology, 18 3
-
A. Houtsmuller, S. Rademakers, A. Nigg, D. Hoogstraten, J. Hoeijmakers, W. Vermeulen (1999)
Action of DNA repair endonuclease ERCC1/XPF in living cells.Science, 284 5416
-
M. Dundr, U. Hoffmann‐Rohrer, Qiyue Hu, I. Grummt, L. Rothblum, R. Phair, T. Misteli (2002)
A Kinetic Framework for a Mammalian RNA Polymerase in VivoScience, 298
-
Kojiro Ishii, Ghislaine Arib, Clayton Lin, G. Houwe, U. Laemmli (2002)
Chromatin Boundaries in Budding Yeast The Nuclear Pore ConnectionCell, 109
-
I. Raška, P. Shaw, D. Cmarko (2006)
Structure and function of the nucleolus in the spotlight.Current opinion in cell biology, 18 3
-
C. Meijden, David Lapointe, Mai Luong, Daan Peric-Hupkes, Brian Cho, J. Stein, A. Wijnen, G. Stein (2002)
Gene profiling of cell cycle progression through S-phase reveals sequential expression of genes required for DNA replication and nucleosome assembly.Cancer research, 62 11
-
S. Kosak, J. Skok, K. Medina, R. Riblet, M. Beau, A. Fisher, Harinder Singh (2002)
Subnuclear Compartmentalization of Immunoglobulin Loci During Lymphocyte DevelopmentScience, 296
-
D. Hernandez-Verdun, P. Roussel, J. Gébrane‐Younès (2002)
Emerging concepts of nucleolar assembly.Journal of cell science, 115 Pt 11
-
Hélia Neves, Carlos Ramos, Maria Silva, A. Parreira, Leonor Parreira (1999)
The nuclear topography of ABL, BCR, PML, and RARalpha genes: evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation.Blood, 93 4
-
A. Murrell, S. Heeson, W. Reik (2004)
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loopsNature Genetics, 36
-
Ghislain Cabal, Auguste Genovesio, Susana Rodríguez-Navarro, C. Zimmer, Olivier Gadal, A. Lesne, H. Buc, Frank Feuerbach-Fournier, Jean-Christophe Olivo-Marin, E. Hurt, U. Nehrbass (2006)
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelopeNature, 441
-
Ellen Breen, J. Wijnen, J. Lian, G. Stein, J. Stein (1994)
In vivo occupancy of the vitamin D responsive element in the osteocalcin gene supports vitamin D-dependent transcriptional upregulation in intact cells.Proceedings of the National Academy of Sciences of the United States of America, 91 26
-
G. Stein, T. Spelsberg, L. Kleinsmith (1974)
Nonhistone Chromosomal Proteins and Gene RegulationScience, 183
-
J. Cell Sci -
P. Lappalainen (2006)
Faculty Opinions recommendation of Nucleoplasmic beta-actin exists in a dynamic equilibrium between low-mobility polymeric species and rapidly diffusing populations. -
Jonathan Chubb, W. Bickmore (2003)
Considering Nuclear Compartmentalization in the Light of Nuclear DynamicsCell, 112
-
L. Chakalova, E. Debrand, Jennifer Mitchell, Cameron Osborne, P. Fraser (2005)
Replication and transcription: Shaping the landscape of the genomeNature Reviews Genetics, 6
-
D. Zink, M. Amaral, Andreas Englmann, Susanne Lang, L. Clarke, C. Rudolph, F. Alt, K. Luther, C. Braz, Nicolas Sadoni, J. Rosenecker, D. Schindelhauer (2004)
Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nucleiThe Journal of Cell Biology, 166
-
Hélia Neves, C. Ramos, Maria Silva, A. Parreira, L. Parreira (1999)
The Nuclear Topography of ABL, BCR, PML, and RAR Genes: Evidence for Gene Proximity in Specific Phases of the Cell Cycle and Stages of Hematopoietic DifferentiationBlood, 93
-
D. Bressan, J. Vazquez, J. Haber (2004)
Mating type–dependent constraints on the mobility of the left arm of yeast chromosome IIIThe Journal of Cell Biology, 164
-
S. Cai, Charles Lee, T. Kohwi-Shigematsu (2006)
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genesNature Genetics, 38
-
G. Stein, W. Park, C. Thrall, R. Mans, J. Stein (1975)
Regulation of cell cycle stage-specific transcription of histone genes from chromatin by non-histone chromosomal proteinsNature, 257
-
T. Misteli (2005)
Concepts in nuclear architectureBioEssays, 27
-
J. Blanton, M. Gaszner, P. Schedl (2003)
Protein:protein interactions and the pairing of boundary elements in vivo.Genes & development, 17 5
-
J. Roix, P. McQueen, P. Munson, L. Parada, T. Misteli (2003)
Spatial proximity of translocation-prone gene loci in human lymphomasNature Genetics, 34
-
C. Woodcock (2006)
Chromatin architecture.Current opinion in structural biology, 16 2
-
K. Meaburn, T. Misteli (2007)
Cell biology: Chromosome territoriesNature, 445
-
Adrian McNairn, Y. Okuno, T. Misteli, D. Gilbert (2005)
Chinese hamster ORC subunits dynamically associate with chromatin throughout the cell-cycle.Experimental cell research, 308 2
-
P. Vaughan, F. Aziz, A. Wijnen, Shujian Wu, H. Harada, T. Taniguchi, K. Soprano, J. Stein, G. Stein (1995)
Activation of a cell-cycle-regulated histone gene by the oncogenic transcription factor IRF-2Nature, 377
-
A. Ramsey‐Ewing, A. Ramsey‐Ewing, A. Wijnen, G. Stein, J. Stein (1994)
Delineation of a human histone H4 cell cycle element in vivo: the master switch for H4 gene transcription.Proceedings of the National Academy of Sciences of the United States of America, 91 10
-
K. Noma, H. Cam, R. Maraia, S. Grewal (2006)
A Role for TFIIIC Transcription Factor Complex in Genome OrganizationCell, 125
-
Open access, freely available online PLoS BIOLOGY Three-Dimensional Maps of All Chromosomes -
M. Cremer, K. Küpper, B. Wagler, Leah Wizelman, J. Hase, Y. Weiland, L. Kreja, J. Diebold, M. Speicher, T. Cremer (2003)
Inheritance of gene density–related higher order chromatin arrangements in normal and tumor cell nucleiThe Journal of Cell Biology, 162
-
M. Kundu, A. Javed, Jae-Pil Jeon, A. Horner, L. Shum, M. Eckhaus, M. Muenke, J. Lian, Yingzi Yang, G. Nuckolls, G. Stein, Pu Liu (2002)
Cbfβ interacts with Runx2 and has a critical role in bone developmentNature Genetics, 32
-
Shin-ichi Horike, S. Cai, M. Miyano, Jan-Fang Cheng, T. Kohwi-Shigematsu (2005)
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndromeNature Genetics, 37
-
M. Simonis, P. Klous, E. Splinter, Y. Moshkin, R. Willemsen, E. Wit, B. Steensel, W. Laat (2006)
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C)Nature Genetics, 38
-
S. Boyle, S. Gilchrist, J. Bridger, Nicola Mahy, Juliet Ellis, W. Bickmore (2001)
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.Human molecular genetics, 10 3
-
D. Wansink, W. Schul, Ineke Kraan, B. Steensel, R. Driel (1993)
Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleusThe Journal of Cell Biology, 122
-
D. Stenoien, K. Patel, M. Mancini, M. Dutertre, Carolyn Smith, B. O’Malley, M. Mancini (2000)
FRAP reveals that mobility of oestrogen receptor-α is ligand- and proteasome-dependentNature Cell Biology, 3
-
J. Thompson, J. Stein, L. Kleinsmith, G. Stein (1976)
Activation of histone gene transcription by nonhistone chromosomal phosphoproteins.Science, 194 4263
-
S. Chambeyron, W. Bickmore (2004)
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.Genes & development, 18 10
-
T. Cheutin, Adrian McNairn, T. Jenuwein, D. Gilbert, Prim Singh, T. Misteli (2003)
Maintenance of Stable Heterochromatin Domains by Dynamic HP1 BindingScience, 299
-
C. Richardson, M. Jasin (2000)
Frequent chromosomal translocations induced by DNA double-strand breaksNature, 405
-
L. Shopland, Christopher Lynch, Kevin Peterson, K. Thornton, Nick Kepper, J. Hase, S. Stein, Sarah Vincent, K. Molloy, G. Kreth, C. Cremer, C. Bult, T. O'brien (2006)
Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequenceThe Journal of Cell Biology, 174
-
N. Xu, Chia‐Lun Tsai, Jeannie Lee (2006)
Transient Homologous Chromosome Pairing Marks the Onset of X InactivationScience, 311
-
A. Agresti, Paola Scaffidi, A. Riva, V. Caiolfa, M. Bianchi (2005)
GR and HMGB1 interact only within chromatin and influence each other's residence time.Molecular cell, 18 1
-
T. Yusufzai, H. Tagami, Y. Nakatani, G. Felsenfeld (2004)
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species.Molecular cell, 13 2
-
M. Labrador, V. Corces (2002)
Setting the Boundaries of Chromatin Domains and Nuclear OrganizationCell, 111
-
E. Kitamura, J. Blow, Tomoyuki Tanaka (2006)
Live-Cell Imaging Reveals Replication of Individual Replicons in Eukaryotic Replication FactoriesCell, 125
-
L. Parada, T. Misteli (2002)
Chromosome positioning in the interphase nucleus.Trends in cell biology, 12 9
-
Nicolas Sadoni, S. Langer, C. Fauth, G. Bernardi, T. Cremer, B. Turner, D. Zink (1999)
Nuclear Organization of Mammalian Genomes : Polar Chromosome Territories Build Up Functionally Distinct Higher Order Compartments -
M. Lisby, U. Mortensen, R. Rothstein (2003)
Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centreNature Cell Biology, 5
-
M. Cornforth, K. Greulich-Bode, B. Loucas, J. Arsuaga, M. Vázquez, R. Sachs, M. Brückner, M. Molls, P. Hahnfeldt, L. Hlatky, D. Brenner (2002)
Chromosomes are predominantly located randomly with respect to each other in interphase human cellsThe Journal of Cell Biology, 159
-
R. Phair, Paola Scaffidi, C. Elbi, J. Vecerova, A. Dey, K. Ozato, David Brown, G. Hager, M. Bustin, T. Misteli (2004)
Global Nature of Dynamic Protein-Chromatin Interactions In Vivo: Three-Dimensional Genome Scanning and Dynamic Interaction Networks of Chromatin ProteinsMolecular and Cellular Biology, 24
-
A. Taddei, G. Houwe, F. Hediger, Véronique Kalck, F. Cubizolles, Heiko Schober, S. Gasser (2006)
Nuclear pore association confers optimal expression levels for an inducible yeast geneNature, 441
-
Y. Gruenbaum, Ayelet Margalit, R. Goldman, D. Shumaker, K. Wilson (2005)
The nuclear lamina comes of ageNature Reviews Molecular Cell Biology, 6
-
Angela Miele, C. Braastad, William Holmes, Partha Mitra, R. Medina, Rong-lin Xie, S. Zaidi, X. Ye, Yue Wei, J. Harper, A. Wijnen, J. Stein, G. Stein (2005)
HiNF-P Directly Links the Cyclin E/CDK2/p220NPAT Pathway to Histone H4 Gene Regulation at the G1/S Phase Cell Cycle TransitionMolecular and Cellular Biology, 25
-
Christian Bacher, M. Guggiari, B. Brors, Sandrine Augui, P. Clerc, P. Avner, R. Eils, E. Heard (2006)
Transient colocalization of X-inactivation centres accompanies the initiation of X inactivationNature Cell Biology, 8
-
D. Bosisio, Ivan Marazzi, A. Agresti, N. Shimizu, M. Bianchi, G. Natoli (2006)
A hyper‐dynamic equilibrium between promoter‐bound and nucleoplasmic dimers controls NF‐κB‐dependent gene activityThe EMBO Journal, 25
-
J. Ling, Tao Li, Ji Hu, T. Vu, Huiling Chen, X. Qiu, A. Cherry, A. Hoffman (2006)
CTCF Mediates Interchromosomal Colocalization Between Igf2/H19 and Wsb1/Nf1Science, 312
-
M. Branco, A. Pombo (2006)
Intermingling of Chromosome Territories in Interphase Suggests Role in Translocations and Transcription-Dependent AssociationsPLoS Biology, 4
-
P. Cook (1999)
The organization of replication and transcription.Science, 284 5421
-
Gustavo Carrero, M. Hendzel, G. Vries (2006)
Modelling the compartmentalization of splicing factors.Journal of theoretical biology, 239 3
-
D. Shumaker, T. Dechat, A. Kohlmaier, S. Adam, Matthew Bozovsky, M. Erdos, M. Eriksson, A. Goldman, S. Khuon, F. Collins, T. Jenuwein, R. Goldman (2006)
Mutant nuclear lamin A leads to progressive alterations of epigenetic control in premature aging.Proceedings of the National Academy of Sciences of the United States of America, 103 23
-
Jie Yao, Katherine Munson, W. Webb, J. Lis (2006)
Dynamics of heat shock factor association with native gene loci in living cellsNature, 442
-
Charalampos Spilianakis, M. Lalioti, T. Town, G. Lee, R. Flavell (2005)
Interchromosomal associations between alternatively expressed lociNature, 435
-
J. Ferreira, G. Paolella, C. Ramos, A. Lamond (1997)
Spatial Organization of Large-Scale Chromatin Domains in the Nucleus: A Magnified View of Single Chromosome TerritoriesThe Journal of Cell Biology, 139
-
S. Kim, P. McQueen, M. Lichtman, E. Shevach, L. Parada, T. Misteli (2004)
Spatial genome organization during T-cell differentiationCytogenetic and Genome Research, 105
-
A. Lichtler, F. Sierra, S. Clark, J. Wells, J. Stein, G. Stein (1982)
Multiple H4 histone mRNAs of HeLa cells are encoded in different genesNature, 298
-
T. Misteli (2001)
Protein dynamics: implications for nuclear architecture and gene expression.Science, 291 5505
-
Cameron Osborne, L. Chakalova, K. Brown, David Carter, Alice Horton, E. Debrand, B. Goyenechea, Jennifer Mitchell, Susana Lopes, W. Reik, P. Fraser (2004)
Active genes dynamically colocalize to shared sites of ongoing transcriptionNature Genetics, 36
-
A. Lamond, D. Spector (2003)
Nuclear speckles: a model for nuclear organellesNature Reviews Molecular Cell Biology, 4
-
Teresa Sullivan, D. Escalante-Alcalde, H. Bhatt, M. Anver, N. Bhat, K. Nagashima, C. Stewart, B. Burke (1999)
Loss of a-Type Lamin Expression Compromises Nuclear Envelope Integrity Leading to Muscular DystrophyThe Journal of Cell Biology, 147
-
Nicolas Sadoni, S. Langer, C. Fauth, G. Bernardi, T. Cremer, B. Turner, D. Zink (1999)
Nuclear Organization of Mammalian GenomesThe Journal of Cell Biology, 146
-
Bolzer (2005)
Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettesPLoS Biol., 3
-
M. Weil, P. Widłak, P. Widłak, J. Minna, H. Garner (2004)
Global survey of chromatin accessibility using DNA microarrays.Genome research, 14 7
-
M. Montecino, J. Lian, G. Stein, J. Stein (1996)
Changes in chromatin structure support constitutive and developmentally regulated transcription of the bone-specific osteocalcin gene in osteoblastic cells.Biochemistry, 35 15
-
L. Parada, P. McQueen, T. Misteli (2004)
Tissue-specific spatial organization of genomesGenome Biology, 5
-
N. Carozzi, F. Marashi, M. Plumb, S. Zimmerman, A. Zimmerman, L. Coles, J. Wells, G. Stein, J. Stein (1984)
Clustering of human H1 and core histone genes.Science, 224 4653
-
K. Meaburn, T. Misteli, E. Soutoglou (2007)
Spatial genome organization in the formation of chromosomal translocations.Seminars in cancer biology, 17 1
-
S. Lomvardas, G. Barnea, D. Pisapia, Monica Mendelsohn, Jennifer Kirkland, R. Axel (2006)
Interchromosomal Interactions and Olfactory Receptor ChoiceCell, 126
-
P. Cook (2002)
Predicting three-dimensional genome structure from transcriptional activityNature Genetics, 32
-
S. Zaidi, Daniel Young, A. Javed, Jitesh Pratap, M. Montecino, A. Wijnen, J. Lian, J. Stein, G. Stein (2007)
Nuclear microenvironments in biological control and cancerNature Reviews Cancer, 7
-
Paola Scaffidi, T. Misteli (2005)
Reversal of the cellular phenotype in the premature aging disease Hutchinson-Gilford progeria syndromeNature Medicine, 11
-
M. Thompson, R. Haeusler, P. Good, D. Engelke (2003)
Nucleolar Clustering of Dispersed tRNA GenesScience, 302
-
T. Cheutin, S. Gorski, K. May, Prim Singh, T. Misteli (2004)
In Vivo Dynamics of Swi6 in Yeast: Evidence for a Stochastic Model of HeterochromatinMolecular and Cellular Biology, 24
-
J. Essers, W. Vermeulen, A. Houtsmuller (2006)
DNA damage repair: anytime, anywhere?Current opinion in cell biology, 18 3
-
N. Dillon, R. Festenstein (2002)
Unravelling heterochromatin: competition between positive and negative factors regulates accessibility.Trends in genetics : TIG, 18 5
-
A. Ansari, M. Hampsey (2005)
A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping.Genes & development, 19 24
-
Jason Casolari, Christopher Brown, Suzanne Komili, J. West, H. Hieronymus, P. Silver (2004)
Genome-Wide Localization of the Nuclear Transport Machinery Couples Transcriptional Status and Nuclear OrganizationCell, 117
-
D. Marenduzzo, C. Micheletti, P. Cook (2006)
Entropy-driven genome organization.Biophysical journal, 90 10
-
S. Zaidi, Daniel Young, S. Pockwinse, A. Javed, J. Lian, J. Stein, A. Wijnen, G. Stein (2003)
Mitotic partitioning and selective reorganization of tissue-specific transcription factors in progeny cellsProceedings of the National Academy of Sciences of the United States of America, 100
-
D. Bentley (2005)
Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors.Current opinion in cell biology, 17 3
-
Janelle Miller, A. Horner, T. Stacy, C. Lowrey, J. Lian, G. Stein, G. Nuckolls, N. Speck (2002)
The core-binding factor β subunit is required for bone formation and hematopoietic maturationNature Genetics, 32
-
W. Bickmore, P. Teague (2004)
Influences of chromosome size, gene density and nuclear position on the frequency of constitutional translocations in the human populationChromosome Research, 10
-
Miguel Martín, Jae-Hyoung Cho, Anthony Cesare, J. Griffith, G. Attardi (2005)
Termination Factor-Mediated DNA Loop between Termination and Initiation Sites Drives Mitochondrial rRNA SynthesisCell, 123
-
Jill Brown, J. Leach, J. Reittie, A. Atzberger, Jane Lee-prudhoe, W. Wood, D. Higgs, F. Iborra, V. Buckle (2006)
Coregulated human globin genes are frequently in spatial proximity when activeThe Journal of Cell Biology, 172
-
A. Wijnen, T. Choi, T. Owen, K. Wright, J. Lian, R. Jaenisch, J. Stein, G. Stein (1991)
Involvement of the cell cycle-regulated nuclear factor HiNF-D in cell growth control of a human H4 histone gene during hepatic development in transgenic mice.Proceedings of the National Academy of Sciences of the United States of America, 88
-
D. Schneider, M. Nomura (2004)
RNA polymerase I remains intact without subunit exchange through multiple rounds of transcription in Saccharomyces cerevisiae.Proceedings of the National Academy of Sciences of the United States of America, 101 42
-
C. Elbi, T. Misteli, G. Hager (2002)
Recruitment of dioxin receptor to active transcription sites.Molecular biology of the cell, 13 6
-
Zhen Hou, Que Nguyen, Baruch Frenkel, Baruch Frenkel, Susan Nilsson, Moira Milne, A. Wijnen, J. Stein, Peter Quesenberry, J. Lian, G. Stein (1999)
Osteoblast-specific gene expression after transplantation of marrow cells: implications for skeletal gene therapy.Proceedings of the National Academy of Sciences of the United States of America, 96 13
-
A. Minton (2000)
Implications of macromolecular crowding for protein assembly.Current opinion in structural biology, 10 1
-
Jason Brickner, P. Walter (2004)
Gene Recruitment of the Activated INO1 Locus to the Nuclear MembranePLoS Biology, 2
-
Diana Vradii, S. Zaidi, J. Lian, A. Wijnen, J. Stein, G. Stein (2005)
Point mutation in AML1 disrupts subnuclear targeting, prevents myeloid differentiation, and effects a transformation-like phenotype.Proceedings of the National Academy of Sciences of the United States of America, 102 20
-
R. Hancock (2004)
A role for macromolecular crowding effects in the assembly and function of compartments in the nucleus.Journal of structural biology, 146 3
-
P. Sabo, R. Humbert, M. Hawrylycz, J. Wallace, M. Dorschner, M. McArthur, J. Stamatoyannopoulos (2004)
Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries.Proceedings of the National Academy of Sciences of the United States of America, 101 13
-
U. Pauli, S. Chrysogelos, G. Stein, J. Stein, H. Nick (1987)
Protein-DNA interactions in vivo upstream of a cell cycle-regulated human H4 histone gene.Science, 236 4806
- Publisher
- Unpaywall
- ISSN
- 0092-8674
- DOI
- 10.1016/j.cell.2007.01.028
- Publisher site
- See Article on Publisher Site
Abstract
Journal
Cell – Unpaywall
Published: Feb 1, 2007