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References (35)
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LINEWIDTH SEP (double) The width of the lines that separate results for different populations (relevant only if PRINT SEP is 1). This parameter should be small compared to INDIVWIDTH -
Michael Banks, W. Eichert (2000)
WHICHRUN (version 3.2): a computer program for population assignment of individuals based on multilocus genotype data.The Journal of heredity, 91 1
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LINEWIDTH RIM (double) The width of the line that comprises the border of the box -
When opening the PostScript output file with a PostScript viewer, the page is blank. However, no error messages were produced when running distruct, and the size of the output file is nonzero -
D. Falush, M. Stephens, J. Pritchard (2003)
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.Genetics, 164 4
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-p (input file) Read a different input file for the population Q-matrix -
Adobe Press, Adobe Syst (1986)
Postscript language - tutorial and cookbook -
(1999)
Postscript Language Reference -
N. Rosenberg, T. Burke, K. Elo, M. Feldman, P. Freidlin, M. Groenen, J. Hillel, A. Mäki-Tanila, Michèle Tixier-Boichard, A. Vignal, K. Wimmers, S. Weigend (2001)
Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds.Genetics, 159 2
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Noah Rosenberg, Eilon Woolf, J. Pritchard, Tamar Schaap, D. Gefel, Isaac Shpirer, U. Lavi, Batsheva Bonne-Tamir, J. Hillel, Marcus Feldman (2001)
Distinctive genetic signatures in the Libyan Jews.Proceedings of the National Academy of Sciences of the United States of America, 98 3
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Angle in degrees at which to print the labels atop the figure -
-o (output file) Print results to a different output file -
-d (drawparams) Read a different parameter input file instead of drawparams -
J. Pritchard, M. Stephens, N. Rosenberg, P. Donnelly (2000)
Association mapping in structured populations.American journal of human genetics, 67 1
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J. Pritchard, Matthew Stephens, P. Donnelly (2000)
Inference of population structure using multilocus genotype data.Genetics, 155 2
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(2004)
Distruct: a program for the graphical display of population -
REPRINT DATA (Boolean) Set to 1 to print the population Q-matrix (and the individual Q-matrix, if applicable) as a comment in the PostScript file -
N (NUMINDS) Change the number of individuals -
Cynthia Brewer, Geoffrey Hatchard, Mark Harrower (2003)
ColorBrewer in Print: A Catalog of Color Schemes for MapsCartography and Geographic Information Science, 30
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B. Rannala, J. Mountain (1997)
Detecting immigration by using multilocus genotypes.Proceedings of the National Academy of Sciences of the United States of America, 94 17
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M. Koskinen, Pekka Sundell, J. Piironen, C. Primmer (2002)
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N. Rosenberg, J. Pritchard, J. Weber, H. Cann, K. Kidd, L. Zhivotovsky, M. Feldman (2002)
Genetic Structure of Human PopulationsScience, 298
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James Wilson, M. Weale, Alice Smith, Fiona Gratrix, B. Fletcher, Mark Thomas, N. Bradman, D. Goldstein (2001)
Population genetic structure of variable drug responseNature Genetics, 29
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Boolean) Set to 1 to print to the screen the first few and last few lines of the files INFILE POPQ and (if appropriate) INFILE INDIVQ -
YSCALE (double) Dilation factor for the y-direction. This factor is applied to all aspects of the figure but does not affect the origin -
Mark Harrower, Cynthia Brewer (2003)
ColorBrewer.org: An Online Tool for Selecting Colour Schemes for MapsThe Cartographic Journal, 40
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Boolean) Set to 1 to print the name of INFILE POPQ above the figure. This option is meant for use only with ORIENTATION=0 -
M. Beaumont, E. Barratt, D. Gottelli, A. Kitchener, M. Daniels, J. Pritchard, M. Bruford (2001)
Genetic diversity and introgression in the Scottish wildcatMolecular Ecology, 10
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Boolean) Set to 1 to print the ColorBrewer settings in the output file. This option is required if using colors from ColorBrewer. 3.3 Command-line arguments -
D. Ruppert (2004)
The Elements of Statistical Learning: Data Mining, Inference, and PredictionJournal of the American Statistical Association, 99
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LINEWIDTH IND (double) The width of the lines used in printing the results. Results are filled boxes, so the value of this parameter should not have any impact -
We also remove the separators between populations (PRINT SEP=0) We then obtain Figure 11. Additional examples using other data sets are shown in Figures 12 and 13 -
YORIGIN (double) The y-coordinate of the lower left corner of the figure -
E. Anderson, E. Thompson (2002)
A model-based method for identifying species hybrids using multilocus genetic data.Genetics, 160 3
- Publisher
- Wiley
- Copyright
- Copyright © 2004 Wiley Subscription Services, Inc., A Wiley Company
- ISSN
- 1755-098X
- eISSN
- 1755-0998
- DOI
- 10.1046/j.1471-8286.2003.00566.x
- Publisher site
- See Article on Publisher Site
Abstract
In analysis of multilocus genotypes from structured populations, individual coefficients of membership in subpopulations are often estimated using programs such as structure. distruct provides a general method for visualizing these estimated membership coefficients. Subpopulations are represented as colours, and individuals are depicted as bars partitioned into coloured segments that correspond to membership coefficients in the subgroups. distruct, available at http://www.cmb.usc.edu/~noahr/distruct.html, can also be used to display subpopulation assignment probabilities when individuals are assumed to have ancestry in only one group.
Journal
Molecular Ecology Resources – Wiley
Published: Mar 1, 2004
Keywords: ; ; ; ;