Sergei Pond, S. Frost (2005)
Datamonkey: rapid detection of selective pressure on individual sites of codon alignmentsBioinformatics, 21 10
W. Reisen, W. Reisen, R. Chiles, V. Martinez, Ying Fang, E. Green (2003)
Experimental Infection of California Birds with Western Equine Encephalomyelitis and St. Louis Encephalitis Viruses, 40
J. Hayes (1975)
Seasonal changes in population structure of Culex pipiens quinquefasciatus Say (Diptera: Culicidae): study of an isolated population.Journal of medical entomology, 12 2
R. Bellamy, W. Reeves, R. Scrivani (1968)
Experimental cyclic transmission of St. Louis encephalitis virus in chickens and Culex mosquitoes through a year.American journal of epidemiology, 87 2
Yvette Girard, K. Klingler, S. Higgs (2004)
West Nile virus dissemination and tissue tropisms in orally infected Culex pipiens quinquefasciatus.Vector borne and zoonotic diseases, 4 2
(2005)
Surveillance for mosquito-borne encephalitis virus activity and human disease, including West Nile virus
L. Lumsden (1958)
St. Louis encephalitis in 1933; observations on epidemiological features.Public health reports, 73 4
Greta Jerzak, K. Bernard, L. Kramer, P. Shi, G. Ebel (2007)
The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice.Virology, 360 2
W. Reisen, L. Kramer, R. Chiles, E. Green, V. Martinez (2001)
Encephalitis Virus Persistence in California Birds: Preliminary Studies with House Finches, 38
W. Reisen, H. Lothrop, S. Wheeler, Marc Kennsington, A. Gutierrez, Ying Fang, Sandra Garcia, B. Lothrop (2008)
Persistent West Nile Virus Transmission and the Apparent Displacement St. Louis Encephalitis Virus in Southeastern California, 2003–2006, 45
Fiona May, Li Li, Shuliu Zhang, H. Guzmán, D. Beasley, R. Tesh, Stephen Higgs, Pushker Raj, Rudy Bueno, Y. Randle, Laura Chandler, Alan Barrett (2008)
Genetic variation of St. Louis encephalitis virusThe Journal of General Virology, 89
E. Holmes (2003)
Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue VirusJournal of Virology, 77
J. Drake, J. Holland (1999)
Mutation rates among RNA viruses.Proceedings of the National Academy of Sciences of the United States of America, 96 24
R. Mclean, J. Mullenix, J. Kerschner, J. Hamm (1983)
The house sparrow (Passer domesticus) as a sentinel for St. Louis encephalitis virus.The American journal of tropical medicine and hygiene, 32 5
(1990)
Epidemiology and control of mosquito-borne arboviruses in California
W. Reisen, H. Lothrop, R. Chiles, M. Madon, C. Cossen, L. Woods, S. Husted, V. Kramer, J. Edman (2004)
West Nile Virus in CaliforniaEmerging Infectious Diseases, 10
F. Ronquist, J. Huelsenbeck (2003)
MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics, 19 12
I. Novella, B. Ebendick-Corpus (2004)
Molecular basis of fitness loss and fitness recovery in vesicular stomatitis virus.Journal of molecular biology, 342 5
C. Biebricher, M. Eigen (2006)
What is a quasispecies?Current topics in microbiology and immunology, 299
Drummond (2007)
BEAST: Bayesian evolutionary analysis by sampling treesBMC Evolutionary Biology, 7
(2007)
BMC Evolutionary Biology BioMed Central
A. Ciota, Amy Lovelace, Susan Jones, A. Payne, L. Kramer (2007)
Adaptation of two flaviviruses results in differences in genetic heterogeneity and virus adaptability.The Journal of general virology, 88 Pt 9
E. Paradis, J. Claude, K. Strimmer (2004)
APE: Analyses of Phylogenetics and Evolution in R languageBioinformatics, 20 2
M. Martínez, C. Carrillo, F. González-Candelas, A. Moya, E. Domingo, F. Sobrino (1991)
Fitness alteration of foot-and-mouth disease virus mutants: measurement of adaptability of viral quasispeciesJournal of Virology, 65
Pond (2005)
HyPhy: hypothesis testing using phylogeniesBioinformatics, 21
Greta Jerzak, K. Bernard, L. Kramer, G. Ebel (2005)
Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection.The Journal of general virology, 86 Pt 8
S. Higgs, K. Snow, E. Gould (2004)
The potential for West Nile virus to establish outside of its natural range: a consideration of potential mosquito vectors in the United Kingdom.Transactions of the Royal Society of Tropical Medicine and Hygiene, 98 2
Sergei Pond, S. Frost, S. Muse
BIOINFORMATICS APPLICATIONS
P. Manson (1914)
Tropical Medicine and HygieneThe Indian Medical Gazette, 49
L. Kramer, E. Houk, J. Hardy, Sally Presser (1981)
Dissemination barriers for western equine encephalomyelitis virus in Culex tarsalis infected after ingestion of low viral doses.The American journal of tropical medicine and hygiene, 30 1
Carrie Bradford, Marc Nascarella, Teresa Burns, John Montford, Eric Marsland, Christopher Pepper, S. Presley (2005)
FIRST REPORT OF WEST NILE VIRUS IN MOSQUITOES FROM LUBBOCK COUNTY, TEXAS, 21
R. Meyer, J. Hardy, S. Presser, J. Bruen (1983)
Comparative arboviral susceptibility of female Culex tarsalis (Diptera: Culicidae) collected in CO2-baited traps and reared from field-collected pupae.Journal of medical entomology, 20 1
Darsie (1981)
Identification and geographical distribution of the mosquitoes of North America, north of MexicoSupplement to Mosquito Systematics, 1
Kristen Bernard, Laura Kramer (2001)
West Nile virus activity in the United States, 2001.Viral immunology, 14 4
Kristy Lillibridge, R. Parsons, Y. Randle, A. Rosa, H. Guzmán, M. Siirin, T. Wuithiranyagool, C. Hailey, S. Higgs, Adil Bala, R. Pascua, Tamra Meyer, D. Vanlandingham, R. Tesh (2004)
The 2002 introduction of West Nile virus into Harris County, Texas, an area historically endemic for St. Louis encephalitis.The American journal of tropical medicine and hygiene, 70 6
West Nile Virus Activity—
Sergei Pond, S. Frost (2005)
Not so different after all: a comparison of methods for detecting amino acid sites under selection.Molecular biology and evolution, 22 5
M. Vignuzzi, J. Stone, J. Arnold, C. Cameron, R. Andino (2006)
Quasispecies diversity determines pathogenesis through cooperative interactions in a viral populationNature, 439
Derrick Zwickl (2006)
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
J. Rios, C. Hacker, C. Hailey, R. Parsons (2006)
DEMOGRAPHIC AND SPATIAL ANALYSIS OF WEST NILE VIRUS AND ST. LOUIS ENCEPHALITIS IN HOUSTON, TEXAS, 22
W. Reisen (2003)
Epidemiology of St. Louis encephalitis virus.Advances in virus research, 61
W. Reisen, H. Lothrop, S. Wheeler, Marc Kennsington, A. Gutierrez, Ying Fang, Sandra Garcia, B. Lothrop (2008)
Persistent West Nile virus transmission and the apparent displacement St. Louis encephalitis virus in southeastern California, 2003-2006.Journal of medical entomology, 45 3
Richard Ward (2005)
Identification and Geographical Distribution of the Mosquitoes of North America, North of Mexico, 2nd Edition. By R. F. Darsie Jr. and R. A. Ward, pp. 416. University Press of Florida, USA, 2005. ISBN0 8130 2784 5. US$ 75.00.Parasitology, 131
J. Felsenstein (1985)
Phylogenies and the Comparative MethodThe American Naturalist, 125
A. Stamatakis (2006)
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics, 22 21
L. Kramer, L. Chandler (2001)
Phylogenetic analysis of the envelope gene of St. Louis encephalitis virusArchives of Virology, 146
G. Baillie, S. Kolokotronis, Eric Waltari, J. Maffei, L. Kramer, S. Perkins (2008)
Phylogenetic and evolutionary analyses of St. Louis encephalitis virus genomes.Molecular phylogenetics and evolution, 47 2
Hom (2006)
Surveillance for mosquito-borne encephalitis virus activity and human disease, including West Nile virus, in California, 2005Proceedings of the Mosquito Vector Control Association California, 74
P. Marra, S. Griffing, R. Mclean (2003)
West Nile Virus and Wildlife HealthEmerging Infectious Diseases, 9
A. Ciota, Yongqing Jia, A. Payne, Greta Jerzak, Lauren Davis, David S.Young, Dylan Ehrbar, L. Kramer (2009)
Experimental Passage of St. Louis Encephalitis Virus In Vivo in Mosquitoes and Chickens Reveals Evolutionarily Significant Virus CharacteristicsPLoS ONE, 4
J. Hardy, W. Reeves (1990)
Experimental studies on infection in vectors.
N. Komar, Stanley Langevin, Steven Hinten, N. Nemeth, Eric Edwards, D. Hettler, B. Davis, R. Bowen, M. Bunning (2003)
Experimental Infection of North American Birds with the New York 1999 Strain of West Nile VirusEmerging Infectious Diseases, 9
A. Brault, C. Huang, Stanley Langevin, R. Kinney, R. Bowen, Wanichaya Ramey, N. Panella, E. Holmes, A. Powers, B. Miller (2007)
A single positively selected West Nile viral mutation confers increased virogenesis in American crowsNature Genetics, 39
H. Lothrop, W. Reisen (2001)
Landscape Affects the Host-Seeking Patterns of Culex tarsalis (Diptera: Culicidae) in the Coachella Valley of California, 38
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