Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer-journals/rna-silencing-in-plants-WW0gNbQIwB
References (93)
-
K. Ye, L. Malinina, D. Patel (2003)
Recognition of small interfering RNA by a viral suppressor of RNA silencingNature, 426
-
M. Fagard, Stéphanie Boutet, J. Morel, C. Bellini, H. Vaucheret (2000)
AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals.Proceedings of the National Academy of Sciences of the United States of America, 97 21
-
F. Vaistij, L. Jones, D. Baulcombe (2002)
Spreading of RNA Targeting and DNA Methylation in RNA Silencing Requires Transcription of the Target Gene and a Putative RNA-Dependent RNA Polymerase Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010480.The Plant Cell Online, 14
-
M. Jones-Rhoades, D. Bartel (2004)
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.Molecular cell, 14 6
-
P. Mourrain, C. Beclin, T. Elmayan, F. Feuerbach, C. Godon, J. Morel, David Jouette, Anne-Marie Lacombe, Snezana Nikic, N. Picault, Karine Rémoué, Mathieu Sanial, T. Vo, H. Vaucheret (2000)
Arabidopsis SGS2 and SGS3 Genes Are Required for Posttranscriptional Gene Silencing and Natural Virus ResistanceCell, 101
-
B. Yoo, F. Kragler, E. Varkonyi-Gasic, V. Haywood, Sarah Archer-Evans, Y. Lee, T. Lough, W. Lucas (2004)
A Systemic Small RNA Signaling System in PlantsThe Plant Cell Online, 16
-
A. Hamilton, O. Voinnet, Louise Chappell, D. Baulcombe (2002)
Two classes of short interfering RNA in RNA silencingThe EMBO Journal, 21
-
M. Juarez, Jonathan Kui, Julie Thomas, B. Heller, M. Timmermans (2004)
microRNA-mediated repression of rolled leaf1 specifies maize leaf polarityNature, 428
-
K. Kasschau, Zhixin Xie, E. Allen, C. Llave, E. Chapman, Kate Krizan, J. Carrington (2003)
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction.Developmental cell, 4 2
-
Thomas Volpe, C. Kidner, Ira Hall, G. Teng, S. Grewal, R. Martienssen (2002)
Regulation of Heterochromatic Silencing and Histone H3 Lysine-9 Methylation by RNAiScience, 297
-
Hongwei Li, Wanxiang Li, S. Ding (2002)
Induction and Suppression of RNA Silencing by an Animal VirusScience, 296
-
S. Hammond, Sabrina Boettcher, A. Caudy, R. Kobayashi, G. Hannon (2001)
Argonaute2, a Link Between Genetic and Biochemical Analyses of RNAiScience, 293
-
Allison Mallory, Lara Ely, Trent Smith, R. Marathe, R. Anandalakshmi, M. Fagard, H. Vaucheret, G. Pruss, L. Bowman, V. Vance (2001)
HC-Pro Suppression of Transgene Silencing Eliminates the Small RNAs but Not Transgene Methylation or the Mobile SignalPlant Cell, 13
-
A. Smardon, J. Spoerke, S. Stacey, M. Klein, Nancy Mackin, E. Maine (2000)
Erratum: EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans (Current Biology (2000) 10 (169-178))Current Biology, 10
-
M. Mette, W. Aufsatz, J. Winden, M. Matzke, A. Matzke (2000)
Transcriptional silencing and promoter methylation triggered by double‐stranded RNAThe EMBO Journal, 19
-
R. Martienssen (2003)
Maintenance of heterochromatin by RNA interference of tandem repeatsNature Genetics, 35
-
F. Ratcliff, B. Harrison, D. Baulcombe (1997)
A similarity between viral defense and gene silencing in plants.Science, 276 5318
-
A. Smardon, J. Spoerke, S. Stacey, M. Klein, Nancy Mackin, E. Maine (2000)
EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegansCurrent Biology, 10
-
Sean Taverna, R. Coyne, C. Allis (2002)
Methylation of Histone H3 at Lysine 9 Targets Programmed DNA Elimination in TetrahymenaCell, 110
-
Zhixin Xie, K. Kasschau, J. Carrington (2003)
Negative Feedback Regulation of Dicer-Like1 in Arabidopsis by microRNA-Guided mRNA DegradationCurrent Biology, 13
-
E. Finnegan, R. Margis, P. Waterhouse (2003)
Posttranscriptional Gene Silencing Is Not Compromised in the Arabidopsis CARPEL FACTORY (DICER-LIKE1) Mutant, a Homolog of Dicer-1 from DrosophilaCurrent Biology, 13
-
William Winston, C. Molodowitch, C. Hunter (2002)
Systemic RNAi in C. elegans Requires the Putative Transmembrane Protein SID-1Science, 295
-
L. Lakatos, G. Szittya, D. Silhavy, J. Burgyán (2004)
Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusvirusesThe EMBO Journal, 23
-
G. Pruss, C. Lawrence, T. Bass, Q. Li, L. Bowman, V. Vance (2004)
The potyviral suppressor of RNA silencing confers enhanced resistance to multiple pathogens.Virology, 320 1
-
P. Jeffrey, Julie Miller, E. Kinnucan, N. Thomä, N. Zheng, Phang-lang Chen, Wen-Hwa Lee, N. Pavletich (2002)
Regulation of Heterochromatic Silencing and Histone H 3 Lysine-9 Methylation by RNAi -
A. Verdel, Songtao Jia, S. Gerber, T. Sugiyama, S. Gygi, S. Grewal, D. Moazed (2004)
RNAi-Mediated Targeting of Heterochromatin by the RITS ComplexScience, 303
-
D. Schwarz, G. Hutvagner, T. Du, Zuoshang Xu, N. Aronin, P. Zamore (2003)
Asymmetry in the Assembly of the RNAi Enzyme ComplexCell, 115
-
L. Jones, F. Ratcliff, D. Baulcombe (2001)
RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenanceCurrent Biology, 11
-
O. Voinnet, D. Baulcombe (1997)
Systemic signalling in gene silencingNature, 389
-
P. Dunoyer, C. Lecellier, E. Parizotto, C. Himber, O. Voinnet (2004)
Probing the MicroRNA and Small Interfering RNA Pathways with Virus-Encoded Suppressors of RNA Silencing -
G. Szittya, A. Molnár, D. Silhavy, C. Hornyik, J. Burgyán (2002)
Short Defective Interfering RNAs of Tombusviruses Are Not Targeted but Trigger Post-Transcriptional Gene Silencing against Their Helper Virus Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010366.The Plant Cell Online, 14
-
Ming-Bo Wang, Xue-Yu Bian, Li-min Wu, Li-Xia Liu, N. Smith, D. Isenegger, R. Wu, C. Masuta, V. Vance, J. Watson, A. Rezaian, E. Dennis, P. Waterhouse (2004)
On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites.Proceedings of the National Academy of Sciences of the United States of America, 101 9
-
T. Sijen, J. Fleenor, F. Simmer, K. Thijssen, S. Parrish, L. Timmons, R. Plasterk, A. Fire (2001)
On the Role of RNA Amplification in dsRNA-Triggered Gene SilencingCell, 107
-
T. Dalmay, R. Horsefield, T. Braunstein, D. Baulcombe (2001)
SDE3 encodes an RNA helicase required for post‐transcriptional gene silencing in ArabidopsisThe EMBO Journal, 20
-
C. Cogoni, G. Macino (1999)
Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymeraseNature, 399
-
SA Wingard (1928)
J. Agric. Res., 37
-
Franck Vazquez, Virginie Gasciolli, P. Crété, H. Vaucheret (2004)
The Nuclear dsRNA Binding Protein HYL1 Is Required for MicroRNA Accumulation and Plant Development, but Not Posttranscriptional Transgene SilencingCurrent Biology, 14
-
Zhixin Xie, B. Fan, Chunhong Chen, Zhixiang Chen (2001)
An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defenseProceedings of the National Academy of Sciences of the United States of America, 98
-
C. Llave, Z. Xie, K. Kasschau, J. Carrington, E. Meyerowitz, Y. Cheng, D. Jia, K. Jofuku, J. Bowman
A MicroRNA as a Translational Repressor of APETALA 2 in Arabidopsis Flower Development -
M. Rhoades, B. Reinhart, Lee Lim, C. Burge, B. Bartel, D. Bartel (2002)
Prediction of Plant MicroRNA TargetsCell, 110
-
Wonkeun Park, Junjie Li, R. Song, J. Messing, Xuemei Chen (2002)
CARPEL FACTORY, a Dicer Homolog, and HEN1, a Novel Protein, Act in microRNA Metabolism in Arabidopsis thalianaCurrent Biology, 12
-
Jidong Liu, M. Carmell, M. Carmell, Fabiola Rivas, C. Marsden, J. Thomson, Ji-Joon Song, S. Hammond, L. Joshua-Tor, G. Hannon (2004)
Argonaute2 Is the Catalytic Engine of Mammalian RNAiScience, 305
-
C. Hunter, Hui Sun, R. Poethig (2003)
The Arabidopsis Heterochronic Gene ZIPPY Is an ARGONAUTE Family MemberCurrent Biology, 13
-
O. Voinnet, Carsten Lederer, D. Baulcombe (2000)
A Viral Movement Protein Prevents Spread of the Gene Silencing Signal in Nicotiana benthamianaCell, 103
-
Zhixin Xie, L. Johansen, Adam Gustafson, K. Kasschau, Andrew Lellis, Daniel Zilberman, S. Jacobsen, J. Carrington (2004)
Genetic and Functional Diversification of Small RNA Pathways in PlantsPLoS Biology, 2
-
E. Makeyev, D. Bamford (2002)
Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes.Molecular cell, 10 6
-
J. Palauqui, T. Elmayan, J. Pollien, H. Vaucheret (1997)
Systemic acquired silencing: transgene‐specific post‐transcriptional silencing is transmitted by grafting from silenced stocks to non‐silenced scionsThe EMBO Journal, 16
-
K. Kasschau, Zhixin Xie, E. Allen, C. Llave, E. Chapman, Kate Krizan, J. Carrington (2003)
P 1 / HC-Pro , a Viral Suppressor of RNA Silencing , Interferes with Arabidopsis Development and miRNA -
D. Bartel (2004)
MicroRNAs Genomics, Biogenesis, Mechanism, and FunctionCell, 116
-
Stephen Schauer, S. Jacobsen, D. Meinke, A. Ray (2002)
DICER-LIKE1: blind men and elephants in Arabidopsis development.Trends in plant science, 7 11
-
(1928)
Hosts and symptoms of ring spot, a virus disease of plants -
Minsung Kim, Wynnelena Canio, S. Kessler, N. Sinha (2001)
Developmental Changes Due to Long-Distance Movement of a Homeobox Fusion Transcript in TomatoScience, 293
-
Guillaume Moissiard, O. Voinnet (2004)
Viral suppression of RNA silencing in plants.Molecular plant pathology, 5 1
-
S. Covey, N. Al-Kaff, A. Lángara, D. Turner (1997)
Plants combat infection by gene silencingNature, 385
-
T. Dalmay, A. Hamilton, S. Rudd, S. Angell, D. Baulcombe (2000)
An RNA-Dependent RNA Polymerase Gene in Arabidopsis Is Required for Posttranscriptional Gene Silencing Mediated by a Transgene but Not by a VirusCell, 101
-
M. Wassenegger, S. Heimes, Leonhard Riedel, H. Sänger (1994)
RNA-directed de novo methylation of genomic sequences in plantsCell, 76
-
C. Himber, P. Dunoyer, Guillaume Moissiard, C. Ritzenthaler, O. Voinnet (2003)
Transitivity‐dependent and ‐independent cell‐to‐cell movement of RNA silencingThe EMBO Journal, 22
-
R. Sunkar, Jian‐Kang Zhu (2004)
Novel and Stress-Regulated MicroRNAs and Other Small RNAs from ArabidopsisThe Plant Cell Online, 16
-
J. Vargason, G. Szittya, J. Burgyán, T. Hall (2003)
Size Selective Recognition of siRNA by an RNA Silencing SuppressorCell, 115
-
Stéphanie Boutet, Franck Vazquez, Jun Liu, C. Beclin, M. Fagard, Ariane Gratias, J. Morel, P. Crété, Xuemei Chen, H. Vaucheret (2003)
Arabidopsis HEN1 A Genetic Link between Endogenous miRNA Controlling Development and siRNA Controlling Transgene Silencing and Virus ResistanceCurrent Biology, 13
-
E. Chapman, Alexey Prokhnevsky, K. Gopinath, V. Dolja, J. Carrington (2004)
Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step.Genes & development, 18 10
-
H. Houdt, I. Ingelbrecht, M. Montagu, A. Depicker (1997)
Post-transcriptional silencing of a neomycin phosphotransferase II transgene correlates with the accumulation of unproductive RNAs and with increased cytosine methylation of 3' flanking regionsPlant Journal, 12
-
C. Llave, K. Kasschau, M. Rector, J. Carrington (2002)
Endogenous and Silencing-Associated Small RNAs in Plants Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003210.The Plant Cell Online, 14
-
W. Schiebel, B. Haas, S. Marinković, A. Klanner, H. Sänger (1993)
RNA-directed RNA polymerase from tomato leaves. II. Catalytic in vitro properties.The Journal of biological chemistry, 268 16
-
S. Floyd, J. Bowman (2004)
Gene regulation: Ancient microRNA target sequences in plantsNature, 428
-
Z. Lichner, D. Silhavy, J. Burgyán (2003)
Double-stranded RNA-binding proteins could suppress RNA interference-mediated antiviral defences.The Journal of general virology, 84 Pt 4
-
Kazufumi Mochizuki, N. Fine, T. Fujisawa, M. Gorovsky (2002)
Analysis of a piwi-Related Gene Implicates Small RNAs in Genome Rearrangement in TetrahymenaCell, 110
-
C. Kidner, R. Martienssen (2004)
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1Nature, 428
-
Daniel Zilberman, Xiaofeng Cao, S. Jacobsen (2003)
ARGONAUTE4 Control of Locus-Specific siRNA Accumulation and DNA and Histone MethylationScience, 299
-
S. Pfeffer, M. Zavolan, F. Grässer, Minchen Chien, J. Russo, J. Ju, Bino John, Anton Enright, D. Marks, C. Sander, T. Tuschl (2004)
Identification of Virus-Encoded MicroRNAsScience, 304
-
O. Voinnet, P. Vain, S. Angell, D. Baulcombe (1998)
Systemic Spread of Sequence-Specific Transgene RNA Degradation in Plants Is Initiated by Localized Introduction of Ectopic Promoterless DNACell, 95
-
Allison Mallory, Diana Dugas, D. Bartel, B. Bartel (2004)
MicroRNA Regulation of NAC-Domain Targets Is Required for Proper Formation and Separation of Adjacent Embryonic, Vegetative, and Floral OrgansCurrent Biology, 14
-
J. Palatnik, E. Allen, Xuelin Wu, C. Schommer, R. Schwab, J. Carrington, D. Weigel (2003)
Control of leaf morphogenesis by microRNAsNature, 425
-
C. Llave, Zhixin Xie, K. Kasschau, J. Carrington (2002)
Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNAScience, 297
-
V. Haywood, F. Kragler, W. Lucas (2002)
Plasmodesmata Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.000778.The Plant Cell Online, 14
-
Xuemei Chen (2004)
A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower DevelopmentScience, 303
-
Kayoko Yamada, Jun-Man Lim, Joseph Dale, Huaming Chen, P. Shinn, C. Palm, Audrey Southwick, Hank Wu, Christopher Kim, M. Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley Liu, Bao Lam, H. Sakano, Troy Wu, Guixia Yu, Molly Miranda, H. Quach, M. Tripp, Charlie Chang, J. Lee, Mitsue Toriumi, Marie Chan, C. Tang, C. Onodera, Justine Deng, Kenji Akiyama, Yasser Ansari, T. Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, A. Enju, A. Goldsmith, M. Gurjal, Nancy Hansen, Y. Hayashizaki, Chanda Johnson-Hopson, Vickie Hsuan, K. Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, P. Jiang, Ted Jones, J. Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, M. Narusaka, M. Seki, Tetsuya Sakurai, Masakazu Satou, R. Tamse, M. Vaysberg, Erika Wallender, Cecilia Wong, Y. Yamamura, Shiaulou Yuan, K. Shinozaki, Ronald Davis, A. Theologis, J. Ecker (2003)
Empirical Analysis of Transcriptional Activity in the Arabidopsis GenomeScience, 302
-
M. Aukerman, H. Sakai (2003)
Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and Its APETALA2-Like Target Genes Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.016238.The Plant Cell Online, 15
-
Andreas Lingel, B. Simon, E. Izaurralde, M. Sattler (2004)
Nucleic acid 3′-end recognition by the Argonaute2 PAZ domainNature Structural &Molecular Biology, 11
-
B. Ding, M. Kwon, R. Hammond, R. Owens (1997)
Cell-to-cell movement of potato spindle tuber viroid.The Plant journal : for cell and molecular biology, 12 4
-
Modulation of photoperiodic control of floral transition by a hormonally regulated microRNA -
H. Vaucheret, Franck Vazquez, P. Crété, D. Bartel (2004)
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.Genes & development, 18 10
-
Andrew Hamilton, David Baulcombe (1999)
A species of small antisense RNA in posttranscriptional gene silencing in plants.Science, 286 5441
-
I. Papp, M. Mette, W. Aufsatz, L. Daxinger, Stephen Schauer, A. Ray, J. Winden, M. Matzke, A. Matzke (2003)
Evidence for Nuclear Processing of Plant Micro RNA and Short Interfering RNA Precursors1[w]Plant Physiology, 132
-
Mengna Han, Saiprasad Goud, Liang Song, N. Fedoroff (2004)
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation.Proceedings of the National Academy of Sciences of the United States of America, 101 4
-
Wanxiang Li, Hongwei Li, R. Lu, Feng Li, Monica Dus, P. Atkinson, E. Brydon, Kyle Johnson, A. García-Sastre, L. Ball, P. Palese, S. Ding (2004)
Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing.Proceedings of the National Academy of Sciences of the United States of America, 101 5
-
L. Timmons, A. Fire (1998)
Specific interference by ingested dsRNANature, 395
-
G. Tang, B. Reinhart, D. Bartel, P. Zamore (2003)
A biochemical framework for RNA silencing in plants.Genes & development, 17 1
-
Andreas Lingel, B. Simon, E. Izaurralde, M. Sattler (2003)
Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domainNature, 426
-
Evan Feinberg, C. Hunter (2003)
Transport of dsRNA into Cells by the Transmembrane Protein SID-1Science, 301
-
Allison Mallory, B. Reinhart, D. Bartel, V. Vance, L. Bowman (2002)
A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobaccoProceedings of the National Academy of Sciences of the United States of America, 99
-
J. Emery, S. Floyd, J. Alvarez, Y. Eshed, N. Hawker, A. Izhaki, S. Baum, J. Bowman (2003)
Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI GenesCurrent Biology, 13
-
L. Iyer, Eugene Koonin, L. Aravind (2003)
Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerasesBMC Structural Biology, 3
- Publisher
- Springer Journals
- Copyright
- Copyright © Springer Nature Limited 2004
- Subject
- Science, Humanities and Social Sciences, multidisciplinary; Science, Humanities and Social Sciences, multidisciplinary; Science, multidisciplinary
- ISSN
- 0028-0836
- eISSN
- 1476-4687
- DOI
- 10.1038/nature02874
- Publisher site
- See Article on Publisher Site
Abstract
There are at least three RNA silencing pathways for silencing specific genes in plants. In these pathways, silencing signals can be amplified and transmitted between cells, and may even be self-regulated by feedback mechanisms. Diverse biological roles of these pathways have been established, including defence against viruses, regulation of gene expression and the condensation of chromatin into heterochromatin. We are now in a good position to investigate the full extent of this functional diversity in genetic and epigenetic mechanisms of genome control.
Journal
Nature – Springer Journals
Published: Sep 16, 2004