Access the full text.
Sign up today, get DeepDyve free for 14 days.
Steve Carr, Susan Abbatiello, B. Ackermann, C. Borchers, B. Domon, E. Deutsch, R. Grant, A. Hoofnagle, Ruth Hüttenhain, J. Koomen, D. Liebler, Tao Liu, B. MacLean, D. Mani, E. Mansfield, H. Neubert, A. Paulovich, Lukas Reiter, O. Vitek, R. Aebersold, Leigh Anderson, R. Bethem, J. Blonder, Emily Boja, Julianne Botelho, Michael Boyne, Ralph Bradshaw, Alma Burlingame, Daniel Chan, Hasmik Keshishian, E. Kuhn, C. Kinsinger, Jerry Lee, Sang-Won Lee, R. Moritz, J. Oses-Prieto, Nader Rifai, James Ritchie, Henry Rodriguez, P. Srinivas, R. Townsend, Jennifer Eyk, Gordon Whiteley, A. Wiita, Susan Weintraub (2014)
Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach*Molecular & Cellular Proteomics : MCP, 13
A. Kettenbach, J. Rush, S. Gerber (2011)
Absolute quantification of protein and post-translational modification abundance with stable isotope–labeled synthetic peptidesNature Protocols, 6
D. Kirkpatrick, S. Gerber, S. Gygi (2005)
The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications.Methods, 35 3
D. Phanstiel, Yi Zhang, J. Marto, J. Coon (2008)
Peptide and protein quantification using iTRAQ with electron transfer dissociationJournal of the American Society for Mass Spectrometry, 19
A. Ledvina, M. Savitski, A. Zubarev, D. Good, J. Coon, R. Zubarev (2011)
Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra.Analytical chemistry, 83 20
T. Green, Silvia Macpherson, S. Qiu, J. Lebowitz, G. Wertz, M. Luo (2000)
Study of the Assembly of Vesicular Stomatitis Virus N Protein: Role of the P ProteinJournal of Virology, 74
Catherine Minogue, Alexander Hebert, Jarred Rensvold, M. Westphall, D. Pagliarini, J. Coon (2015)
Multiplexed quantification for data-independent acquisition.Analytical chemistry, 87 5
S. Gallien, E. Duriez, Catharina Crone, M. Kellmann, T. Moehring, B. Domon (2012)
Targeted Proteomic Quantification on Quadrupole-Orbitrap Mass Spectrometer*Molecular & Cellular Proteomics, 11
Susan Abbatiello, D. Mani, Hasmik Keshishian, Steve Carr (2010)
Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.Clinical chemistry, 56 2
Derek Bailey, Molly McDevitt, M. Westphall, D. Pagliarini, J. Coon (2014)
Intelligent Data Acquisition Blends Targeted and Discovery MethodsJournal of Proteome Research, 13
A. Makarov, E. Denisov, Oliver Lange, S. Horning (2006)
Dynamic range of mass accuracy in LTQ orbitrap hybrid mass spectrometerJournal of The American Society for Mass Spectrometry, 17
Yingxin Zhao, A. Brasier (2013)
Applications of selected reaction monitoring (SRM)-mass spectrometry (MS) for quantitative measurement of signaling pathways.Methods, 61 3
P. Picotti, R. Aebersold (2012)
Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directionsNature Methods, 9
J. Coon, J. Syka, J. Shabanowitz, D. Hunt (2005)
Tandem mass spectrometry for peptide and protein sequence analysis.BioTechniques, 38 4
Arne Ulbrich, Derek Bailey, M. Westphall, J. Coon (2014)
Organic acid quantitation by NeuCode methylamidation.Analytical chemistry, 86 9
A. Makarov, E. Denisov, Oliver Lange (2009)
Performance evaluation of a high-field orbitrap mass analyzerJournal of the American Society for Mass Spectrometry, 20
S. Gallien, A. Bourmaud, Sang Kim, B. Domon (2014)
Technical considerations for large-scale parallel reaction monitoring analysis.Journal of proteomics, 100
Leo Lefrançois, D. Lyles (1982)
The interaction of antibody with the major surface glycoprotein of vesicular stomatitis virus. I. Analysis of neutralizing epitopes with monoclonal antibodies.Virology, 121 1
Alicia Richards, Anna Merrill, J. Coon (2015)
Proteome sequencing goes deep.Current opinion in chemical biology, 24
Annette Michalski, Eugen Damoc, J. Hauschild, Oliver Lange, A. Wieghaus, A. Makarov, Nagarjuna Nagaraj, Jüergen Cox, M. Mann, S. Horning (2011)
Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer*Molecular & Cellular Proteomics : MCP, 10
Ching-Yun Chang, P. Picotti, Ruth Hüttenhain, V. Heinzelmann-Schwarz, M. Jovanović, R. Aebersold, O. Vitek (2011)
Protein Significance Analysis in Selected Reaction Monitoring (SRM) Measurements*Molecular & Cellular Proteomics, 11
T. Aye, T. Low, Yngvild Bjørlykke, Harald Barsnes, A. Heck, F. Berven (2012)
Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins.Analytical chemistry, 84 11
Alexander Hebert, Anna Merrill, Derek Bailey, Amelia Still, M. Westphall, Eric Streiter, D. Pagliarini, J. Coon (2013)
Neutron-encoded mass signatures for multi-plexed proteome quantificationNature methods, 10
C. Wenger, G. McAlister, Qiangwei Xia, J. Coon (2010)
Sub-part-per-million Precursor and Product Mass Accuracy for High-throughput Proteomics on an Electron Transfer Dissociation-enabled Orbitrap Mass Spectrometer*Molecular & Cellular Proteomics, 9
Amelia Peterson, J. Russell, Derek Bailey, M. Westphall, J. Coon (2012)
Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics*Molecular & Cellular Proteomics, 11
Alejandro Wolf-Yadlin, S. Hautaniemi, D. Lauffenburger, F. White (2007)
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networksProceedings of the National Academy of Sciences, 104
Jacob Kennedy, Susan Abbatiello, Kyunggon Kim, Ping Yan, Jeffrey Whiteaker, ChenWei Lin, J. Kim, Yuzheng Zhang, Xianlong Wang, R. Ivey, Lei Zhao, H. Min, Youngju Lee, Myeong-Hee Yu, E. Yang, Cheolju Lee, Pei Wang, H. Rodriguez, Youngsoo Kim, S. Carr, A. Paulovich (2013)
Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteinsNature methods, 11
Christopher Rose, Anna Merrill, Derek Bailey, Alexander Hebert, M. Westphall, J. Coon (2013)
Neutron encoded labeling for peptide identification.Analytical chemistry, 85 10
Arne Ulbrich, Anna Merrill, Alexander Hebert, M. Westphall, M. Keller, A. Attie, J. Coon (2013)
Neutron-Encoded Protein Quantification by Peptide CarbamylationJournal of The American Society for Mass Spectrometry, 25
R. Scheltema, J. Hauschild, Oliver Lange, Daniel Hornburg, E. Denisov, Eugen Damoc, Andreas Kuehn, A. Makarov, M. Mann (2014)
The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer*Molecular & Cellular Proteomics : MCP, 13
Kendra Pesko, E. Voigt, Adam Swick, V. Morley, Collin Timm, John Yin, P. Turner (2015)
Genome rearrangement affects RNA virus adaptability on prostate cancer cellsFrontiers in Genetics, 6
J. Hsu, Sheng‐yu Huang, Shu-Hui Chen (2006)
Dimethyl multiplexed labeling combined with microcolumn separation and MS analysis for time course study in proteomicsELECTROPHORESIS, 27
Alexander Hebert, Alicia Richards, Derek Bailey, Arne Ulbrich, Emma Coughlin, M. Westphall, J. Coon (2013)
The One Hour Yeast Proteome*Molecular & Cellular Proteomics : MCP, 13
H. Röst, L. Malmström, R. Aebersold (2012)
A Computational Tool to Detect and Avoid Redundancy in Selected Reaction MonitoringMolecular & Cellular Proteomics, 11
T. Rhoads, A. Prasad, Nicholas Kwiecien, Anna Merrill, Kelson Zawack, M. Westphall, F. Schroeder, J. Kimble, J. Coon (2015)
NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans*Molecular & Cellular Proteomics, 14
Scarlet Beck, Annette Michalski, O. Raether, M. Lubeck, S. Kaspar, Niels Goedecke, C. Baessmann, Daniel Hornburg, F. Meier, Igor Paron, N. Kulak, Jüergen Cox, M. Mann (2015)
The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics*Molecular & Cellular Proteomics : MCP, 14
Anna Merrill, Alexander Hebert, M. MacGilvray, Christopher Rose, Derek Bailey, Joel Bradley, W. Wood, Marwan Masri, M. Westphall, A. Gasch, J. Coon (2014)
NeuCode Labels for Relative Protein Quantification *Molecular & Cellular Proteomics, 13
Christopher Rose, Muthusubramanian Venkateshwaran, J. Volkening, Paul Grimsrud, J. Maeda, Derek Bailey, K. Park, Maegen Howes-Podoll, Désirée Os, L. Yeun, M. Westphall, M. Sussman, Jean-Michel Ané, J. Coon (2012)
Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis*Molecular & Cellular Proteomics, 11
T. Rhoads, Christopher Rose, Derek Bailey, N. Riley, R. Molden, Amelia Nestler, Anna Merrill, Lloyd Smith, Alexander Hebert, M. Westphall, D. Pagliarini, B. Garcia, J. Coon (2014)
Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics∥Analytical Chemistry, 86
Yingxin Zhao, B. Tian, Chukwudi Edeh, A. Brasier (2013)
Quantitation of the Dynamic Profiles of the Innate Immune Response Using Multiplex Selected Reaction Monitoring–Mass Spectrometry*Molecular & Cellular Proteomics, 12
D. Phanstiel, Richard Unwin, G. McAlister, J. Coon (2009)
Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry.Analytical chemistry, 81 4
Adam Swick, Ashley Baltes, John Yin (2014)
Visualizing infection spread: Dual‐color fluorescent reporting of virus–host interactionsBiotechnology and Bioengineering, 111
Alexander Hebert, Anna Merrill, Jonathan Stefely, Derek Bailey, C. Wenger, M. Westphall, D. Pagliarini, J. Coon (2013)
Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic Quantitation*Molecular & Cellular Proteomics, 12
E. Voigt, John Yin (2015)
Kinetic Differences and Synergistic Antiviral Effects Between Type I and Type III Interferon Signaling Indicate Pathway Independence.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 35 9
Anna Merrill, J. Coon (2013)
Quantifying proteomes and their post-translational modifications by stable isotope label-based mass spectrometry.Current opinion in chemical biology, 17 5
D. Mani, Susan Abbatiello, S. Carr (2012)
Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomicsBMC Bioinformatics, 13
Yue Wu, Fangjun Wang, Zheyi Liu, Hongqiang Qin, Chunxia Song, Junfeng Huang, Yangyang Bian, Xiaoluan Wei, Jing Dong, Hanfa Zou (2014)
Five-plex isotope dimethyl labeling for quantitative proteomics.Chemical communications, 50 14
Alicia Richards, Catherine Vincent, Adrian Guthals, Christopher Rose, M. Westphall, N. Bandeira, J. Coon (2013)
Neutron-encoded Signatures Enable Product Ion Annotation From Tandem Mass Spectra*Molecular & Cellular Proteomics, 12
Hongrui Yin, Lei Zhang, Li-Qi Xie, Li-yong Huang, Ye Xu, S. Cai, Peng-Yuan Yang, Hao-Jie Lu (2013)
Hyperplex-MRM: a hybrid multiple reaction monitoring method using mTRAQ/iTRAQ labeling for multiplex absolute quantification of human colorectal cancer biomarker.Journal of proteome research, 12 9
S. Gallien, E. Duriez, Kevin Demeure, B. Domon (2013)
Selectivity of LC-MS/MS analysis: implication for proteomics experiments.Journal of proteomics, 81
L. Desouza, Adrian Taylor, Wei Li, M. Minkoff, A. Romaschin, T. Colgan, K. Siu (2008)
Multiple reaction monitoring of mTRAQ-labeled peptides enables absolute quantification of endogenous levels of a potential cancer marker in cancerous and normal endometrial tissues.Journal of proteome research, 7 8
J. Simicevic, Adrien Schmid, Paola Gilardoni, Benjamin Zoller, S. Raghav, Irina Krier, Carine Gubelmann, F. Lisacek, F. Naef, M. Moniatte, B. Deplancke (2013)
Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomicsNature Methods, 10
G. McAlister, D. Phanstiel, C. Wenger, M. Lee, Joshua Coon (2010)
Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification.Analytical chemistry, 82 1
Analytical Chemistry – Unpaywall
Published: Feb 16, 2016
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.