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Recent Progress in Genomic Analysis of Ornamental Plants, with a Focus on Carnation

Recent Progress in Genomic Analysis of Ornamental Plants, with a Focus on Carnation The Horticulture Journal 84 (1): 3–13. 2015. e Japanese Society for doi: 10.2503/hortj.MI-IR01 Horticultural Science JSHS http://www.jshs.jp/ Invited Review Recent Progress in Genomic Analysis of Ornamental Plants, with a Focus on Carnation Masafumi Yagi NARO Institute of Floricultural Science (NIFS), Tsukuba 305-8519, Japan Genomic analysis and marker-assisted selection have long been familiar terms. Nevertheless, compared with that on other horticultural crops, genome-related research on ornamentals has been delayed because of the polyploid nature and/or highly heterozygous genetic background of many such species. With the advent of next-generation sequencing (NGS) technology in recent years, however, the situation is changing. The acquisition of comprehensive transcriptome sequences using NGS technology has been conducted in major ornamentals, and whole-genome sequences have been generated for carnation. This review discusses recent progress in the genomic analysis of carnation, including the construction of an SSR-based reference genetic linkage map, QTL analysis of carnation bacterial wilt (CBW) resistance, and the development of tightly linked markers for CBW resistance and flower type. The current state of NGS technology-based genomic research is also summarized for other major ornamentals. Key Words: genome sequencing, linkage map, next-generation sequencing (NGS), SSR, transcriptome. contrast, comparatively little work has been performed Introduction to analyze genome structure http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png The Horticulture Journal Unpaywall

Recent Progress in Genomic Analysis of Ornamental Plants, with a Focus on Carnation

Yagi, Masafumi
The Horticulture Journal – Jan 1, 2015
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Publisher
Unpaywall
ISSN
2189-0102
DOI
10.2503/hortj.mi-ir01
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Abstract

The Horticulture Journal 84 (1): 3–13. 2015. e Japanese Society for doi: 10.2503/hortj.MI-IR01 Horticultural Science JSHS http://www.jshs.jp/ Invited Review Recent Progress in Genomic Analysis of Ornamental Plants, with a Focus on Carnation Masafumi Yagi NARO Institute of Floricultural Science (NIFS), Tsukuba 305-8519, Japan Genomic analysis and marker-assisted selection have long been familiar terms. Nevertheless, compared with that on other horticultural crops, genome-related research on ornamentals has been delayed because of the polyploid nature and/or highly heterozygous genetic background of many such species. With the advent of next-generation sequencing (NGS) technology in recent years, however, the situation is changing. The acquisition of comprehensive transcriptome sequences using NGS technology has been conducted in major ornamentals, and whole-genome sequences have been generated for carnation. This review discusses recent progress in the genomic analysis of carnation, including the construction of an SSR-based reference genetic linkage map, QTL analysis of carnation bacterial wilt (CBW) resistance, and the development of tightly linked markers for CBW resistance and flower type. The current state of NGS technology-based genomic research is also summarized for other major ornamentals. Key Words: genome sequencing, linkage map, next-generation sequencing (NGS), SSR, transcriptome. contrast, comparatively little work has been performed Introduction to analyze genome structure

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The Horticulture Journal – Unpaywall

Published: Jan 1, 2015

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