Rachna Ram, N. Verberkmoes, M. Thelen, G. Tyson, B. Baker, R. Blake, M. Shah, R. Hettich, J. Banfield (2005)
Community Proteomics of a Natural Microbial BiofilmScience, 308
Yan-Huai Ding, K. Hixson, C. Giometti, A. Stanley, A. Estéve-Núñez, Tripti Khare, S. Tollaksen, Wenhong Zhu, J. Adkins, M. Lipton, Richard Smith, T. Mester, D. Lovley (2006)
The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.Biochimica et biophysica acta, 1764 7
S. Giovannoni, H. Tripp, S. Givan, M. Podar, K. Vergin, Damon Baptista, L. Bibbs, Jonathan Eads, T. Richardson, M. Noordewier, M. Rappé, J. Short, J. Carrington, E. Mathur (2005)
Genome Streamlining in a Cosmopolitan Oceanic BacteriumScience, 309
JN Adkins, SM Varnum, KJ Auberry, RJ Moore, NH Angell, RD Smith (2002)
Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry, 1
Stephen Callister, M. Domínguez, C. Nicora, Xiaohua Zeng, Christine Tavano, S. Kaplan, T. Donohue, Richard Smith, M. Lipton (2006)
Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures.Journal of proteome research, 5 8
K. Hixson, J. Adkins, S. Baker, Ronald Moore, B. Chromy, Richard Smith, S. McCutchen-Maloney, M. Lipton (2006)
Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics.Journal of proteome research, 5 11
Lisa Moore, A. Post, G. Rocap, S. Chisholm (2002)
Utilization of different nitrogen sources by the marine cyanobacteria Prochlorococcus and SynechococcusLimnology and Oceanography, 47
W. Ludwig, O. Strunk, S. Klugbauer, N. Klugbauer, M. Weizenegger, Judith Neumaier, M. Bachleitner, K. Schleifer (1998)
Bacterial phylogeny based on comparative sequence analysis (review)ELECTROPHORESIS, 19
Jingfeng Wu, W. Sunda, E. Boyle, D. Karl (2000)
Phosphate depletion in the western North Atlantic Ocean.Science, 289 5480
M. Ehlers, T. Cloete (1999)
Comparing the protein profiles of 21 different activated sludge systems after SDS-PAGEWater Research, 33
R. Rivkin, M. Anderson (1997)
Inorganic nutrient limitation of oceanic bacterioplanktonLimnology and Oceanography, 42
C. Lacerda, L. Choe, K. Reardon (2007)
Metaproteomic analysis of a bacterial community response to cadmium exposure.Journal of proteome research, 6 3
J. Eng, A. McCormack, J. Yates (1994)
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseJournal of the American Society for Mass Spectrometry, 5
Andrew Keller, A. Nesvizhskii, E. Kolker, R. Aebersold (2002)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.Analytical chemistry, 74 20
N. Antia, P. Harrison, L. Oliveira (1991)
The role of dissolved organic nitrogen in phytoplankton nutrition, cell biology and ecologyPhycologia, 30
M. Mills, C. Moore, R. Langlois, A. Milne, E. Achterberg, K. Nachtigall, K. Lochte, R. Geider, R. La (2008)
Nitrogen and phosphorus co‐limitation of bacterial productivity and growth in the oligotrophic subtropical North AtlanticLimnology and Oceanography, 53
W. Ludwig, O. Strunk, Ralf Westram, L. Richter, H. Meier, Yadhukumar, Arno Buchner, Tina Lai, Susanne Steppi, Gangolf Jobb, Wolfram Förster, Igor Brettske, Stefan Gerber, Anton Ginhart, Oliver Gross, Silke Grumann, Stefan Hermann, R. Jost, A. König, T. Liß, Ralph Lüssmann, M. May, Björn Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, Norbert Stuckmann, Alexander Vilbig, M. Lenke, T. Ludwig, A. Bode, K. Schleifer (2004)
ARB: a software environment for sequence data.Nucleic acids research, 32 4
R. Morris, M. Rappé, S. Connon, K. Vergin, William Siebold, C. Carlson, S. Giovannoni (2002)
SAR11 clade dominates ocean surface bacterioplankton communitiesNature, 420
J. Collier, B. Brahamsha, B. Palenik (1999)
The marine cyanobacterium Synechococcus sp. WH7805 requires urease (urea amidohydrolase, EC 3.5.1.5) to utilize urea as a nitrogen source: molecular-genetic and biochemical analysis of the enzyme.Microbiology, 145 ( Pt 2)
G. Holtmann, E. Bremer (2004)
Thermoprotection of Bacillus subtilis by Exogenously Provided Glycine Betaine and Structurally Related Compatible Solutes: Involvement of Opu TransportersJournal of Bacteriology, 186
M. Zubkov, I. Mary, E. Woodward, P. Warwick, B. Fuchs, D. Scanlan, P. Burkill (2007)
Microbial control of phosphate in the nutrient-depleted North Atlantic subtropical gyre.Environmental microbiology, 9 8
D. Button, B. Robertson (2000)
Effect of nutrient kinetics and cytoarchitecture on bacterioplankter sizeLimnology and Oceanography, 45
S. Gygi, Yvan Rochon, B. Franza, R. Aebersold (1999)
Correlation between Protein and mRNA Abundance in YeastMolecular and Cellular Biology, 19
Deborah Steinberg (2001)
Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistryDeep-sea Research Part Ii-topical Studies in Oceanography, 48
A. Martiny, Maureen Coleman, S. Chisholm (2006)
Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptationProceedings of the National Academy of Sciences, 103
M. Rappé, S. Connon, K. Vergin, S. Giovannoni (2002)
Cultivation of the ubiquitous SAR11 marine bacterioplankton cladeNature, 418
W Ludwig, O Strunk, S Klugbauer, N Klugbauer, M Weizenegger, J Neumaier (1998)
Bacterial phylogeny based on comparative sequence analysisElectrophoresis, 19
Dwayne Elias, S. Tollaksen, D. Kennedy, H. Mottaz, C. Giometti, J. McLean, E. Hill, Grigoriy Pinchuk, M. Lipton, J. Fredrickson, Y. Gorby (2007)
The influence of cultivation methods on Shewanella oneidensis physiology and proteome expressionArchives of Microbiology, 189
M. Zubkov, B. Fuchs, G. Tarran, P. Burkill, R. Amann (2003)
High Rate of Uptake of Organic Nitrogen Compounds by Prochlorococcus Cyanobacteria as a Key to Their Dominance in Oligotrophic Oceanic WatersApplied and Environmental Microbiology, 69
K. Igarashi, Keiko Kashiwagi (1999)
Polyamine transport in bacteria and yeast.The Biochemical journal, 344 Pt 3
M. Lomas, A. Swain, R. Shelton, J. Ammerman (2004)
Taxonomic variability of phosphorus stress in Sargasso Sea phytoplanktonLimnology and Oceanography, 49
J. Forward, M. Behrendt, N. Wyborn, R. Cross, D. Kelly (1997)
TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse gram-negative bacteriaJournal of Bacteriology, 179
P Hirsch, M Bernhard, SS Cohen, JC Ensign, HW Jannasch, AL Koch (1979)
Strategies of Microbial Life in Extreme Environments: report of the Dahlem Workshop on Strategy of Life in Extreme Environments, Berlin, 1978, November 20–24
P. Wilmes, P. Bond (2004)
The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms.Environmental microbiology, 6 9
J. Fuhrman, M. Schwalbach, U. Stingl (2008)
Proteorhodopsins: an array of physiological roles?Nature Reviews Microbiology, 6
Fiona Woodger, M. Badger, G. Price (2003)
Inorganic Carbon Limitation Induces Transcripts Encoding Components of the CO2-Concentrating Mechanism in Synechococcus sp. PCC7942 through a Redox-Independent PathwayPlant Physiology, 133
J. Kan, Thomas Hanson, Joy Ginter, Kui Wang, F. Chen (2005)
Metaproteomic analysis of Chesapeake Bay microbial communitiesSaline Systems, 1
M. Washburn, D. Wolters, J. Yates (2001)
Large-scale analysis of the yeast proteome by multidimensional protein identification technologyNature Biotechnology, 19
F. Neidhardt, J. Ingraham (1987)
Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology
L. Kolowith, E. Ingall, R. Benner (2001)
Composition and cycling of marine organic phosphorusLimnology and Oceanography, 46
K. Field, D. Gordon, T. Wright, M. Rappé, E. Urback, K. Vergin, S. Giovannoni (1997)
Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteriaApplied and Environmental Microbiology, 63
J. Frias-Lopez, Yanmei Shi, G. Tyson, Maureen Coleman, S. Schuster, S. Chisholm, E. Delong (2008)
Microbial community gene expression in ocean surface watersProceedings of the National Academy of Sciences, 105
J. Adkins, H. Mottaz, A. Norbeck, J. Gustin, Joanne Rue, T. Clauss, S. Purvine, K. Rodland, F. Heffron, Richard Smith (2006)
Analysis of the Salmonella typhimurium Proteome through Environmental Response toward Infectious Conditions*Molecular & Cellular Proteomics, 5
R. Malmstrom, R. Kiene, M. Cottrell, D. Kirchman (2004)
Contribution of SAR11 Bacteria to Dissolved Dimethylsulfoniopropionate and Amino Acid Uptake in the North Atlantic OceanApplied and Environmental Microbiology, 70
H. Tripp, J. Kitner, M. Schwalbach, J. Dacey, L. Wilhelm, S. Giovannoni (2008)
SAR11 marine bacteria require exogenous reduced sulphur for growthNature, 452
L. Wilhelm, H. Tripp, S. Givan, Daniel Smith, S. Giovannoni (2007)
Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic dataBiology Direct, 2
Rachel Poretsky, N. Bano, A. Buchan, Gary Lecleir, Jutta Kleikemper, M. Pickering, Whitney Pate, M. Moran, J. Hollibaugh (2005)
Analysis of Microbial Gene Transcripts in Environmental SamplesApplied and Environmental Microbiology, 71
Michele DuRand, R. Olson, S. Chisholm (2001)
Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso SeaDeep-sea Research Part Ii-topical Studies in Oceanography, 48
D. Nicastro, C. Schwartz, J. Pierson, J-C Cho, S. Giovannoni, J. McIntosh (2006)
Three-dimensional Structure of the Tiny Bacterium Pelagibacter ubique Studied by Cryo-electron TomographyMicroscopy and Microanalysis, 12
M. Sieracki, E. Haugen, T. Cucci (1995)
Overestimation of heterotrophic bacteria in the Sargasso Sea: direct evidence by flow and imaging cytometry, 42
S. Sowell, A. Norbeck, M. Lipton, C. Nicora, Stephen Callister, Richard Smith, D. Barofsky, S. Giovannoni (2008)
Proteomic Analysis of Stationary Phase in the Marine Bacterium “Candidatus Pelagibacter ubique”Applied and Environmental Microbiology, 74
F. Lipschultz (2001)
A time-series assessment of the nitrogen cycle at BATSDeep-sea Research Part Ii-topical Studies in Oceanography, 48
R. McKay, Sarah Gibbs, G. Espie (2004)
Effect of dissolved inorganic carbon on the expression of carboxysomes, localization of Rubisco and the mode of inorganic carbon transport in cells of the cyanobacterium Synechococcus UTEX 625Archives of Microbiology, 159
J. Adkins, S. Varnum, K. Auberry, Ronald Moore, Nicolas Angell, Richard Smith, D. Springer, J. Pounds (2002)
Toward a Human Blood Serum ProteomeMolecular & Cellular Proteomics, 1
Ian Lo, Vincent Denef, N. Verberkmoes, M. Shah, D. Goltsman, Genevieve DiBartolo, Gene Tyson, Eric Allen, Rachna Ram, J. Detter, P. Richardson, M. Thelen, R. Hettich, J. Banfield (2007)
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteriaNature, 446
S. Giovannoni, L. Bibbs, Jang-Cheon Cho, M. Stapels, R. Desiderio, K. Vergin, M. Rappé, S. Laney, Lawrence Wilhelm, H. Tripp, E. Mathur, D. Barofsky (2005)
Proteorhodopsin in the ubiquitous marine bacterium SAR11Nature, 438
B. Wanner (1996)
Phosphorus assimilation and control of the phosphate regulon
M. Chang, M. Dayhoff, R. Eck, M. Sochard (1965)
Atlas of protein sequence and structure
M. Heldal, David Scanlan, S. Norland, F. Thingstad, N. Mann (2003)
Elemental composition of single cells of various strains of marine Prochlorococcus and Synechococcus using X‐ray microanalysisLimnology and Oceanography, 48
W. Schulze, G. Gleixner, K. Kaiser, G. Guggenberger, M. Mann, E. Schulze (2004)
A proteomic fingerprint of dissolved organic carbon and of soil particlesOecologia, 142
D. Scanlan, N. Silman, K. Donald, W. Wilson, N. Carr, I. Joint, N. Mann (1997)
An immunological approach to detect phosphate stress in populations and single cells of photosynthetic picoplanktonApplied and Environmental Microbiology, 63
D. Button (2004)
Nutrient-limited microbial growth kinetics: overview and recent advancesAntonie van Leeuwenhoek, 63
P. Sedwick, T. Church, A. Bowie, C. Marsay, S. Ussher, Katherine Achilles, Paul Lethaby, R. Johnson, M. Sarin, D. McGillicuddy (2005)
Iron in the Sargasso Sea (Bermuda Atlantic Time‐series Study region) during summer: Eolian imprint, spatiotemporal variability, and ecological implicationsGlobal Biogeochemical Cycles, 19
C. Carlson, H. Ducklow, T. Sleeter (1996)
Stocks and dynamics of bacterioplankton in the northwestern Sargasso SeaDeep-sea Research Part Ii-topical Studies in Oceanography, 43
Craig Venter, K. Remington, J. Heidelberg, A. Halpern, D. Rusch, J. Eisen, Dongying Wu, I. Paulsen, K. Nelson, W. Nelson, D. Fouts, S. Levy, A. Knap, M. Lomas, K. Nealson, O. White, J. Peterson, Jeff Hoffman, R. Parsons, Holly Baden-Tillson, C. Pfannkoch, Y. Rogers, Hamilton Smith (2004)
Environmental Genome Shotgun Sequencing of the Sargasso SeaScience, 304
M. Sumper, E. Brunner, G. Lehmann (2005)
Biomineralization in diatoms: Characterization of novel polyamines associated with silicaFEBS Letters, 579
S. Dyhrman, S. Haley (2006)
Phosphorus Scavenging in the Unicellular Marine Diazotroph Crocosphaera watsoniiApplied and Environmental Microbiology, 72
J. Cotner, J. Ammerman, E. Peele, E. Bentzen (1997)
Phosphorus-limited bacterioplankton growth in the Sargasso SeaAquatic Microbial Ecology, 13
B. Mooy, G. Rocap, Helen Fredricks, Colleen Evans, A. Devol (2006)
Sulfolipids dramatically decrease phosphorus demand by picocyanobacteria in oligotrophic marine environments.Proceedings of the National Academy of Sciences of the United States of America, 103 23
S. Güler, Angela Seeliger, H. Härtel, G. Renger, C. Benning (1996)
A Null Mutant of Synechococcus sp. PCC7942 Deficient in the Sulfolipid Sulfoquinovosyl Diacylglycerol (*)The Journal of Biological Chemistry, 271
R. Morris, K. Vergin, Jang-Cheon Cho, M. Rappé, C. Carlson, S. Giovannoni (2005)
Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time‐series Study siteLimnology and Oceanography, 50
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