-
G.
Wallner,
B.
Fuchs,
Stefan
Spring,
Wolfgang
Beisker,
Rudolf
Amann
(1997)
Flow sorting of microorganisms for molecular analysis
Applied and Environmental Microbiology, 63
-
Rheims H.
(1996)
A molecular approach to search for diversity among bacteria in the environment.
J. Ind. Microbiol., 17
-
(1990)
Detailed structures of rRNAs: new approaches
-
R.
Amann,
W.
Ludwig,
K.
Schleifer
(1995)
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
Microbiological reviews, 59 1
-
R.
Amann
(1995)
Fluorescently labelled, rRNA‐targeted oligonucleotide probes in the study of microbial ecology
Molecular Ecology, 4
-
M.
Dojka,
P.
Hugenholtz,
S.
Haack,
N.
Pace
(1998)
Microbial Diversity in a Hydrocarbon- and Chlorinated-Solvent-Contaminated Aquifer Undergoing Intrinsic Bioremediation
Applied and Environmental Microbiology, 64
-
B.
Methé,
W.
Hiorns,
J.
Zehr
(1998)
Contrasts between marine and freshwater bacterial community composition: Analyses of communities in Lake George and six other Adirondack lakes
Limnology and Oceanography, 43
-
G.
Olsen,
H.
Matsuda,
R.
Hagstrom,
R.
Overbeek
(1994)
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
Computer applications in the biosciences : CABIOS, 10 1
-
N.
Saitou,
M.
Nei
(1987)
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Molecular biology and evolution, 4 4
-
Markus
Schuppler,
Frank
Mertens,
Georg
Schön,
Ulf
Göbel
(1995)
Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis.
Microbiology, 141 ( Pt 2)
-
S.
Giovannoni,
T.
Britschgi,
C.
Moyer,
K.
Field
(1990)
Genetic diversity in Sargasso Sea bacterioplankton
Nature, 345
-
J.
Fuhrman,
D.
Comeau,
Å.
Hagström,
A.
Chan
(1988)
Extraction from Natural Planktonic Microorganisms of DNA Suitable for Molecular Biological Studies
Applied and Environmental Microbiology, 54
-
M.
Felip,
B.
Sattler,
R.
Psenner,
J.
Catalán
(1995)
Highly active microbial communities in the ice and snow cover of high mountain lakes
Applied and Environmental Microbiology, 61
-
D.
Livingstone
(1999)
Ice break‐up on southern Lake Baikal and its relationship to local and regional air temperatures in Siberia and to the North Atlantic Oscillation
Limnology and Oceanography, 44
-
P.
Bond,
P.
Hugenholtz,
J.
Keller,
L.
Blackall
(1995)
Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
Applied and Environmental Microbiology, 61
-
C.
Roller,
M.
Wagner,
R.
Amann,
W.
Ludwig,
K.
Schleifer
(1995)
In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides.
Microbiology, 141 ( Pt 5)
-
J.
Gosink,
J.
Staley
(1995)
Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water
Applied and Environmental Microbiology, 61
-
B.
Buchholz-Cleven,
B.
Rattunde,
K.
Straub
(1997)
Screening for Genetic Diversity of Isolates of Anaerobic Fe(II)-oxidizing Bacteria Using DGGE and Wh
-
Michael
Tanner,
B.
Goebel,
M.
Dojka,
N.
Pace
(1998)
Specific Ribosomal DNA Sequences from Diverse Environmental Settings Correlate with Experimental Contaminants
Applied and Environmental Microbiology, 64
-
K.
Pedersen,
L.
Hallbeck,
J.
Arlinger,
Ann-Charlotte
Erlandson,
N.
Jahromi
(1997)
Investigation of the potential for microbial contamination of deep granitic aquifers during drilling using 16S rRNA gene sequencing and culturing methods
Journal of Microbiological Methods, 30
-
L.
Denisova,
N.
Bel'kova,
I.
Tulokhonov,
E.
Zaichikov
(1999)
Bacterial diversity at various depths in the southern part of lake baikal as revealed by 16S rDNA sequencing
Microbiology, 68
-
W.
Hill
(1990)
The Ribosome : structure, function, and evolution
-
J.
Snaidr,
R.
Amann,
I.
Huber,
W.
Ludwig,
K.
Schleifer
(1997)
Phylogenetic analysis and in situ identification of bacteria in activated sludge
Applied and Environmental Microbiology, 63
-
K.
Pedersen,
J.
Arlinger,
S.
Ekendahl,
L.
Hallbeck
(1996)
16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden
FEMS Microbiology Ecology, 19
-
K.
Pedersen,
J.
Arlinger,
L.
Hallbeck,
C.
Pettersson
(1996)
Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing
Molecular Ecology, 5
-
J.
Pernthaler,
A.
Alfreider,
T.
Posch,
S.
Andreatta,
R.
Psenner
(1997)
In situ classification and image cytometry of pelagic bacteria from a high mountain lake (gossenkollesee, austria)
Applied and Environmental Microbiology, 63
-
F.
Glöckner,
R.
Amann,
A.
Alfreider,
J.
Pernthaler,
R.
Psenner,
K.
Trebesius,
K.
Schleifer
(1996)
An in situ hybridization protocol for detection and identification of planktonic bacteria
Systematic and Applied Microbiology, 19
-
S.
Kalmbach,
W.
Manz,
U.
Szewzyk
(1997)
Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes
Applied and Environmental Microbiology, 63
-
T.
Mullins,
T.
Britschgi,
R.
Krest,
S.
Giovannoni
(1995)
Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
Limnology and Oceanography, 40
-
A.
Felske,
H.
Rheims,
A.
Wolterink,
E.
Stackebrandt,
A.
Akkermans
(1997)
Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils.
Microbiology, 143 ( Pt 9)
-
10.1128/AEM.64.5.1895-1901.1998
-
Pedersen K.
(1996)
10.1111/j.1365-294X.1996.tb00332.x
Mol. Ecol., 5
-
G.
Olsen,
D.
Lane,
S.
Giovannoni,
N.
Pace,
D.
Stahl
(1986)
Microbial ecology and evolution: a ribosomal RNA approach.
Annual review of microbiology, 40
-
J.
Pernthaler,
F.
Glöckner,
S.
Unterholzner,
A.
Alfreider,
R.
Psenner,
R.
Amann
(1998)
Seasonal Community and Population Dynamics of Pelagic Bacteria and Archaea in a High Mountain Lake
Applied and Environmental Microbiology, 64
-
B.
Fuchs,
G.
Wallner,
W.
Beisker,
I.
Schwippl,
W.
Ludwig,
R.
Amann
(1998)
Flow Cytometric Analysis of the In Situ Accessibility of Escherichia coli 16S rRNA for Fluorescently Labeled Oligonucleotide Probes
Applied and Environmental Microbiology, 64
-
M.
Bahr,
J.
Hobbie,
M.
Sogin
(1996)
Bacterial diversity in an arctic lake: a freshwater SAR11 cluster
Aquatic Microbial Ecology, 11
-
Jürgen
Brosius,
T.
Dull,
Donald
Sleeter,
H.
Noller
(1981)
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
Journal of molecular biology, 148 2
-
10.1128/mr.59.1.143-169.1995
-
R.
Amann,
W.
Ludwig
(1994)
Typing in Situ with Probes
-
E.
Chen,
P.
Seeburg
(1985)
Supercoil sequencing: a fast method for sequencing plasmid DNA
, 4
-
E.
Chen,
P.
Seeburg
(1985)
Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.
DNA, 4 2
-
J.
Borneman,
P.
Skroch,
K.
O'sullivan,
James
Palus,
N.
Rumjanek,
Jennifer
Jansen,
J.
Nienhuis,
E.
Triplett
(1996)
Molecular microbial diversity of an agricultural soil in Wisconsin
Applied and Environmental Microbiology, 62
-
H.
Takami,
A.
Inoue,
Fumie
Fuji,
K.
Horikoshi
(1997)
Microbial flora in the deepest sea mud of the Mariana Trench.
FEMS microbiology letters, 152 2
-
M.
Wise,
J.
McArthur,
L.
Shimkets
(1997)
Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: confirmation of novel taxa
Applied and Environmental Microbiology, 63
-
C.
Price
(1993)
Fluorescence in situ hybridization.
Blood reviews, 7 2
-
Stackebrandt E.
(1993)
10.1096/fasebj.7.1.8422969
FASEB J., 7
-
W.
Hiorns,
B.
Methé,
S.
Nierzwicki-Bauer,
J.
Zehr
(1997)
Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences
Applied and Environmental Microbiology, 63
-
F.
Glöckner,
B.
Fuchs,
R.
Amann
(1999)
Bacterioplankton Compositions of Lakes and Oceans: a First Comparison Based on Fluorescence In Situ Hybridization
Applied and Environmental Microbiology, 65
-
F.
Priest,
A.
Ramos‐Cormenzana,
B.
Tindall
(1994)
Bacterial Diversity and Systematics
-
K.
Šimek,
D.
Babenzien,
T.
Bittl,
R.
Koschel,
Miroslav
Macek,
J.
Nedoma,
J.
Vrba
(1998)
Microbial Food Webs in an Artificially Divided Acidic Bog Lake
International Review of Hydrobiology, 83
-
M.
Rappé,
D.
Gordon,
K.
Vergin,
S.
Giovannoni
(1999)
Phylogeny of Actinobacteria Small Subunit (SSU) rRNA Gene Clones Recovered From Marine Bacterioplankton
Systematic and Applied Microbiology, 22
-
N.
Pace
(1997)
A molecular view of microbial diversity and the biosphere.
Science, 276 5313
-
M.
Madigan,
J.
Martinko,
J.
Parker
(1996)
Brock Biology of Microorganisms
-
(1998)
Cat scratch disease: the rare role of Afipia felis
-
L.
Sly,
T.
Cox,
T.
Beckenham
(1999)
The phylogenetic relationships of Caulobacter, Asticcacaulis and Brevundimonas species and their taxonomic implications.
International journal of systematic bacteriology, 49 Pt 2
-
G.
Zwart,
W.
Hiorns,
B.
Methé,
M.
Agterveld,
R.
Huismans,
S.
Nold,
J.
Zehr,
H.
Laanbroek
(1998)
Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria.
Systematic and applied microbiology, 21 4
-
F.
Glöckner,
H.
Babenzien,
J.
Wulf,
R.
Amann
(1999)
Phylogeny and diversity of Achromatium oxaliferum.
Systematic and applied microbiology, 22 1
-
R.
Amann,
L.
Krumholz,
D.
Stahl
(1990)
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
Journal of Bacteriology, 172
-
C.
Woese
(1987)
Bacterial evolution
Microbiological Reviews, 51
-
K.
Jürgens,
J.
Pernthaler,
S.
Schalla,
R.
Amann
(1999)
Morphological and Compositional Changes in a Planktonic Bacterial Community in Response to Enhanced Protozoan Grazing
Applied and Environmental Microbiology, 65
-
J.
Borneman,
E.
Triplett
(1997)
Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation
Applied and Environmental Microbiology, 63
-
B.
Maidak,
J.
Cole,
T.
Lilburn,
C.
Parker,
Paul
Saxman,
Jason
Stredwick,
G.
Garrity,
Bing
Li,
G.
Olsen,
S.
Pramanik,
T.
Schmidt,
J.
Tiedje
(2000)
The RDP (Ribosomal Database Project) continues
Nucleic acids research, 28 1
-
Debbie
Bradford,
P.
Hugenholtz,
E.
Seviour,
M.
Cunningham,
H.
Stratton,
R.
Seviour,
L.
Blackall
(1996)
16S rRNA Analysis of Isolates Obtained from Gram-Negative, Filamentous Bacteria Micromanipulated fro
-
B.
Fuchs,
F.
Glöckner,
J.
Wulf,
R.
Amann
(2000)
Unlabeled Helper Oligonucleotides Increase the In Situ Accessibility to 16S rRNA of Fluorescently Labeled Oligonucleotide Probes
Applied and Environmental Microbiology, 66
-
10.1128/JCM.36.9.2499-2502.1998
-
(1997)
Copyright © 1998, American Society for Microbiology Phylogeny and Identification In Situ of Nevskia ramosa
-
G.
Wallner,
R.
Amann,
W.
Beisker
(1993)
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms.
Cytometry, 14 2
-
Bacterial Diversity in a Soil Sample from a Subtropical Australian Environment as Determined by 16s Rdna Analysis
-
P.
Hugenholtz,
B.
Goebel,
N.
Pace
(1998)
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
Journal of Bacteriology, 180
-
S.
Ekendahl,
J.
Arlinger,
F.
Ståhl,
K.
Pedersen
(1994)
Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy.
Microbiology, 140 ( Pt 7)
-
B.
Crump,
E.
Armbrust,
J.
Baross
(1999)
Phylogenetic Analysis of Particle-Attached and Free-Living Bacterial Communities in the Columbia River, Its Estuary, and the Adjacent Coastal Ocean
Applied and Environmental Microbiology, 65
-
I.
McDonald,
G.
Hall,
R.
Pickup,
J.
Murrell
(1996)
Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques
FEMS Microbiology Ecology, 21
-
R.
Amann,
F.
Glöckner,
Alexander
Neef
(1997)
Modern methods in subsurface microbiology: in situ identification of microorganisms with nucleic acid probes
Fems Microbiology Reviews, 20
