Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/wiley/association-analysis-for-quality-traits-in-a-diverse-panel-of-chinese-9yJ0sXtQaz
References (78)
-
F. Breseghello, M. Sorrells (2006)
Association Analysis as a Strategy for Improvement of Quantitative Traits in PlantsCrop Science, 46
-
K. Neumann, B. Kobiljski, S. Dencic, R. Varshney, A. Börner (2010)
Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.)Molecular Breeding, 27
-
JB Yan, M Warburton, J Crouch (2011)
Association mapping for enhancing maize genetic improvement, 51
-
A. Niedziela, Piotr Bednarek, H. Cichy, G. Budzianowski, A. Kilian, A. Aniol (2012)
Aluminum tolerance association mapping in triticaleBMC Genomics, 13
-
G. Evanno, S. Regnaut, J. Goudet (2005)
Detecting the number of clusters of individuals using the software structure: a simulation studyMolecular Ecology, 14
-
D. Falush, M. Stephens, J. Pritchard (2003)
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.Genetics, 164 4
-
S. Murray, W. Rooney, M. Hamblin, S. Mitchell, S. Kresovich (2009)
Sweet Sorghum Genetic Diversity and Association Mapping for Brix and HeightThe Plant Genome, 2
-
C. Carlson, M. Eberle, L. Kruglyak, D. Nickerson (2004)
Mapping complex disease loci in whole-genome association studiesNature, 429
-
J. Darroch, J. Mosimann (1985)
Canonical and principal components of shapeBiometrika, 72
-
GY Lu, GS Yang, TD Fu (2001)
Silver‐stained AFLP: A novel assay for DNA fingerprinting in Brassica napus, 20
-
X. Bai, Bi Wu, Y. Xing (2012)
Yield-related QTLs and their applications in rice genetic improvement.Journal of integrative plant biology, 54 5
-
Daniel Levy, S. DePalma, E. Benjamin, Christopher O’Donnell, Helen Parise, J. Hirschhorn, R. Vasan, Seigo Izumo, M. Larson (2006)
Phenotype-genotype association grid: a convenient method for summarizing multiple association analysesBMC Genetics, 7
-
Kejun Liu, S. Muse (2005)
PowerMarker: an integrated analysis environment for genetic marker analysisBioinformatics, 21 9
-
Liang Jin, Yan Lu, P. Xiao, Mei Sun, H. Corke, J. Bao (2010)
Genetic diversity and population structure of a diverse set of rice germplasm for association mappingTheoretical and Applied Genetics, 121
-
D. Reich, M. Cargill, S. Bolk, J. Ireland, Pardis Sabeti, D. Richter, T. Lavery, Rose Kouyoumjian, S. Farhadian, R. Ward, E. Lander (2001)
Linkage disequilibrium in the human genomeNature, 411
-
J. Pritchard, Matthew Stephens, P. Donnelly (2000)
Inference of population structure using multilocus genotype data.Genetics, 155 2
-
Jianming Yu, Zhiwu Zhang, Chengsong Zhu, D. Tabanao, G. Pressoir, M. Tuinstra, S. Kresovich, R. Todhunter, E. Buckler (2009)
Simulation Appraisal of the Adequacy of Number of Background Markers for Relationship Estimation in Association MappingThe Plant Genome, 2
-
B. Stich, J. Möhring, H. Piepho, M. Heckenberger, E. Buckler, A. Melchinger (2008)
Comparison of Mixed-Model Approaches for Association MappingGenetics, 178
-
O. Hardy, X. Vekemans (2002)
spagedi: a versatile computer program to analyse spatial genetic structure at the individual or population levelsMolecular Ecology Notes, 2
-
S. Schneider, L. Excoffier (1999)
Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA.Genetics, 152 3
-
G. Churchill, R. Doerge (1994)
Empirical threshold values for quantitative trait mapping.Genetics, 138 3
-
B. Stich, A. Melchinger, M. Frisch, H. Maurer, M. Heckenberger, J. Reif (2005)
Linkage disequilibrium in European elite maize germplasm investigated with SSRsTheoretical and Applied Genetics, 111
-
Zhang Xiurong, Z. Yingzhong, C. Yong, Feng Xiang-yun, Guo Qingyuan, Zhou Mingde, T. Hodgkin (2000)
Establishment of sesame germplasm core collection in ChinaGenetic Resources and Crop Evolution, 47
-
Jianan Zhang, C. Hao, Q. Ren, X. Chang, Guiru Liu, R. Jing (2011)
Association mapping of dynamic developmental plant height in common wheatPlanta, 234
-
J. Gouis, J. Gouis, J. Bordes, J. Bordes, C. Ravel, C. Ravel, Emmanuel Heumez, S. Faure, S. Praud, N. Galic, C. Remoué, F. Balfourier, F. Balfourier, V. Allard, V. Allard, M. Rousset (2011)
Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheatTheoretical and Applied Genetics, 124
-
M. Malosetti, C. Linden, B. Vosman, F. Eeuwijk (2007)
A Mixed-Model Approach to Association Mapping Using Pedigree Information With an Illustration of Resistance to Phytophthora infestans in PotatoGenetics, 175
-
K. Arumuganathan, E. Earle (1991)
Nuclear DNA content of some important plant speciesPlant Molecular Biology Reporter, 9
-
F. Couviour, S. Faure, Bruno Poupard, Y. Flodrops, P. Dubreuil, S. Praud (2011)
Analysis of genetic structure in a panel of elite wheat varieties and relevance for association mappingTheoretical and Applied Genetics, 123
-
Peter Bradbury, Zhiwu Zhang, Dallas Kroon, T. Casstevens, Yogesh Ramdoss, E. Buckler (2007)
TASSEL: software for association mapping of complex traits in diverse samplesBioinformatics, 23 19
-
R. Snowdon, W. Friedt (2004)
Molecular markers in Brassica oilseed breeding: current status and future possibilitiesPlant Breeding, 123
-
David Hall, Carolina Tegström, P. Ingvarsson (2010)
Using association mapping to dissect the genetic basis of complex traits in plants.Briefings in functional genomics, 9 2
-
Jeffry Thornsberry, M. Goodman, J. Doebley, S. Kresovich, D. Nielsen, E. Buckler (2001)
Dwarf8 polymorphisms associate with variation in flowering timeNature Genetics, 28
-
J. Mandel, Jennifer Dechaine, L. Marek, J. Burke (2011)
Genetic diversity and population structure in cultivated sunflower and a comparison to its wild progenitor, Helianthus annuus LTheoretical and Applied Genetics, 123
-
F. Breseghello, M. Sorrells (2006)
Association Mapping of Kernel Size and Milling Quality in Wheat (Triticum aestivum L.) CultivarsGenetics, 172
-
E. Ersoz, Jianming Yu, E. Buckler (2009)
Applications of Linkage Disequilibrium and Association Mapping in Maize -
Chengsong Zhu, M. Gore, E. Buckler, Jianming Yu (2008)
Status and Prospects of Association Mapping in PlantsThe Plant Genome, 1
-
L Excoffier, G Laval, S Schneider (2005)
Arlequin ver. 3.0: An integrated software package for population genetics data analysis, 1
-
Jianbing Yan, M. Warburton, J. Crouch (2011)
Association Mapping for Enhancing Maize (Zea mays L.) Genetic ImprovementCrop Science, 51
-
Yanxiang Zhang, Xiurong Zhang, Wei Hua, Linhai Wang, Zhuo Che (2010)
Analysis of genetic diversity among indigenous landraces from sesame (Sesamum indicum L.) core collection in China as revealed by SRAP and SSR markersGenes & Genomics, 32
-
W. Branch (2011)
First 100 Years – Inheritance of Testa Color in Peanut ( Arachis hypogaea L.)Crop Science, 51
-
A. Dixit, M. Jin, J. Chung, J. Yu, Hun-Ki Chung, K. Ma, Yong-Jin Park, E. Cho (2005)
Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.)Molecular Ecology Notes, 5
-
S. Myles, Jason Peiffer, P. Brown, E. Ersoz, Zhiwu Zhang, D. Costich, E. Buckler (2009)
Association Mapping: Critical Considerations Shift from Genotyping to Experimental DesignThe Plant Cell Online, 21
-
M Morgante, F Salamini (2003)
From genomics to breeding practice, 14
-
M. Morgante, F. Salamini (2003)
From plant genomics to breeding practice.Current opinion in biotechnology, 14 2
-
P Zhang, HY Zhang, WZ Guo, YZ Zheng, LB Wei, TZ Zhang (2007)
Genetic diversity analysis of Sesamum indicum L. germplasm using SRAP and EST‐SSR markers, 33
-
J. Reif, M. Gowda, H. Maurer, C. Longin, V. Korzun, E. Ebmeyer, Reiner Bothe, C. Pietsch, T. Würschum (2011)
Association mapping for quality traits in soft winter wheatTheoretical and Applied Genetics, 122
-
A. Rezaeizad, B. Wittkop, R. Snowdon, M. Hasan, V. Mohammadi, A. Zali, W. Friedt (2011)
Identification of QTLs for phenolic compounds in oilseed rape (Brassica napus L.) by association mapping using SSR markersEuphytica, 177
-
I. Abdurakhmonov, A. Abdukarimov (2008)
Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm ResourcesInternational Journal of Plant Genomics, 2008
-
G Brar, R Ahuja (1979)
Annual Review of Plant Science -
JJ Doyle, JL Doyle (1987)
A rapid DNA isolation procedure for small quantity of fresh leaf tissue, 19
-
Z. Hao, Xinhai Li, Chuanxiao Xie, J. Weng, Mingshun Li, De-gui Zhang, Xiaoling Liang, Lingling Liu, Sisi Liu, Shi-huang Zhang (2011)
Identification of functional genetic variations underlying drought tolerance in maize using SNP markers.Journal of integrative plant biology, 53 8
-
Yafang Shao, Liang Jin, Gan Zhang, Yan Lu, Yunbiao Shen, J. Bao (2011)
Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled riceTheoretical and Applied Genetics, 122
-
Jianming Yu, E. Buckler (2006)
Genetic association mapping and genome organization of maize.Current opinion in biotechnology, 17 2
-
Keyan Zhao, M. Aranzana, Sung Kim, C. Lister, C. Shindo, Chunlao Tang, C. Toomajian, Honggang Zheng, C. Dean, P. Marjoram, M. Nordborg (2006)
An Arabidopsis Example of Association Mapping in Structured SamplesPLoS Genetics, 3
-
Jianming Yu, G. Pressoir, W. Briggs, I. Bi, M. Yamasaki, J. Doebley, M. McMullen, B. Gaut, D. Nielsen, J. Holland, S. Kresovich, E. Buckler (2006)
A unified mixed-model method for association mapping that accounts for multiple levels of relatednessNature Genetics, 38
-
J. Andersen, T. Schrag, A. Melchinger, I. Zein, T. Lübberstedt (2005)
Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.)Theoretical and Applied Genetics, 111
-
K. Weiss, A. Clark (2002)
Linkage disequilibrium and the mapping of complex human traits.Trends in genetics : TIG, 18 1
-
L. Camus-Kulandaivelu, Jean-Baptiste Veyrieras, D. Madur, V. Combes, M. Fourmann, S. Barraud, P. Dubreuil, B. Gouesnard, D. Manicacci, A. Charcosset (2006)
Maize Adaptation to Temperate Climate: Relationship Between Population Structure and Polymorphism in the Dwarf8 GeneGenetics, 172
-
Xiaoli Jin, K. Wei, Guo-ping Zhang (2011)
A genome-wide association analysis of quantitative trait loci for protein fraction content in Tibetan wild barleyBiotechnology Letters, 34
-
S. Flint-Garcia, Jeffry Thornsberry, E. Buckler (2003)
Structure of linkage disequilibrium in plants.Annual review of plant biology, 54
-
J. Marchini, L. Cardon, M. Phillips, P. Donnelly (2004)
The effects of human population structure on large genetic association studiesNature Genetics, 36
-
J. Reif, S. Hamrit, M. Heckenberger, W. Schipprack, H. Maurer, M. Bohn, A. Melchinger (2005)
Trends in genetic diversity among European maize cultivars and their parental components during the past 50 yearsTheoretical and Applied Genetics, 111
-
I. Abdurakhmonov, S. Saha, J. Jenkins, Z. Buriev, S. Shermatov, B. Scheffler, A. Pepper, John Yu, R. Kohel, A. Abdukarimov (2009)
Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasmGenetica, 136
-
JC Reif, S Hamrit, M Heckenberger, W Schipprack, HP Maurer, M Bohn, AE Melchinger (2005)
Temporal trend of genetic diversity in European maize germplasm, 111
-
Weiguo Zhao, Eun-Jin Park, J. Chung, Yong-Jin Park, I. Chung, Joung-Kuk Ahn, Gwang-Ho Kim (2009)
Association analysis of the amino acid contents in rice.Journal of integrative plant biology, 51 12
-
A. Price, N. Patterson, R. Plenge, M. Weinblatt, N. Shadick, D. Reich (2006)
Principal components analysis corrects for stratification in genome-wide association studiesNature Genetics, 38
-
Lilia Eleuch, A. Jilal, S. Grando, S. Ceccarelli, Maria Schmising, H. Tsujimoto, Amara Hajer, Abderrazek Daaloul, M. Baum (2008)
Genetic diversity and association analysis for salinity tolerance, heading date and plant height of barley germplasm using simple sequence repeat markers.Journal of integrative plant biology, 50 8
-
B. Stich, A. Melchinger (2010)
An introduction to association mapping in plants.Cab Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 5
-
J. Wang, P. McClean, Rian Lee, R. Goos, T. Helms (2008)
Association mapping of iron deficiency chlorosis loci in soybean (Glycine max L. Merr.) advanced breeding linesTheoretical and Applied Genetics, 116
-
G. Li, C. Quiros (2001)
Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in BrassicaTheoretical and Applied Genetics, 103
-
J. Pritchard, M. Przeworski (2001)
Linkage disequilibrium in humans: models and data.American journal of human genetics, 69 1
-
Wen-liang Wei, X. Qi, Linhai Wang, Yanxin Zhang, Wei Hua, Donghua Li, Haixia Lv, Xiurong Zhang (2011)
Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markersBMC Genomics, 12
-
WL Wei, YX Zhang, HX Lv, DH Li, LH Wang, XR Zhang (2012)
Population structure and association analysis of oil content in a diverse set of Chinese sesame (Sesamum indicum L.) germplasm, 45
-
Weiwei Wen, Tingting Guo, Victor Tovar, Huihui Li, Jianbing Yan, S. Taba (2012)
The strategy and potential utilization of temperate germplasm for tropical germplasm improvement: a case study of maize (Zea mays L.)Molecular Breeding, 29
-
Xiaohong Yang, Yu-qiu Guo, Jianbing Yan, Jun Zhang, T. Song, T. Rocheford, Jian-sheng Li (2010)
Major and minor QTL and epistasis contribute to fatty acid compositions and oil concentration in high-oil maizeTheoretical and Applied Genetics, 120
-
ES Ersoz, J Yu, ES Buckler (2009)
Molecular Genetic Approaches to Maize Improvement -
P. Gupta, Yunbi Xu (2009)
Genomics of Major Crops and Model Plant SpeciesInternational Journal of Plant Genomics, 2008
-
EL Hernan, K Petr (2006)
Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP), 7
- Publisher
- Wiley
- Copyright
- © 2013 Institute of Botany, Chinese Academy of Sciences
- ISSN
- 1672-9072
- eISSN
- 1744-7909
- DOI
- 10.1111/jipb.12049
- pmid
- 23570323
- Publisher site
- See Article on Publisher Site
Abstract
The main objective of this study was to evaluate the potential of a sesame (Sesamum indicum L.) panel for association analysis, and investigate the genetic basis of oil content (OC), protein content, oleic acid concentration, and linoleic acid concentration using association mapping. A panel of 216 sesame accessions was phenotyped in a multi‐environment trial and fingerprinted with 608 polymorphic loci produced by 79 primers, including simple sequence repeats (SSRs), sequence‐related amplified polymorphisms (SRAPs), and amplified fragment length polymorphisms (AFLPs). Population structure analysis revealed two subgroups in the population. The Q model performed better for its ability to re‐identify associations for the four traits at highly significant P‐values compared to the other three mixed models. And a total of 35 and 25 associations for the four traits in 2010 and 2011 were identified, respectively, with the Q model after Bonferroni correction. Among those associations, only one for OC was re‐identified in two environments, and several markers associated simultaneously with multiple traits were discovered. These results suggest the power and stability of the Q model for association analysis of nutritional traits in this sesame panel for its slight population stratification and familial relationship, which could aid in dissecting complex traits, and could help to develop strategies for improving nutritional quality.
Journal
Journal of Integrative Plant Biology – Wiley
Published: Aug 1, 2013
Keywords: ; ; ;