Access the full text.
Sign up today, get DeepDyve free for 14 days.
(2015)
translation elongation factor 1 alpha (EF-1a) gene is adapted from Jones et al
(2002)
Systematics and evolution of Tarasa (Malvaceae): an enigmatic
W. Kress, David Erickson (2007)
A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer RegionPLoS ONE, 2
(2007)
Ralstonia solanacearum strains from Martinique
H. Ramadan, N. Baeshen (2012)
Biological Identifications Through DNA Barcodes
(2012)
DNA barcoding for identification
K. O’Donnell, H. Kistler, E. Cigelnik, R. Ploetz (1998)
Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies.Proceedings of the National Academy of Sciences of the United States of America, 95 5
T. Sang, D. Crawford, T. Stuessy (1997)
Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae).American journal of botany, 84 8
(2002)
PCR sequencing of 447 bp (amplicon size including primers) of the mitochondrial cytochrome c oxidase subunit I (COI) gene
M. Holterman, O. Holovachov, S. Elsen, H. Megen, T. Bongers, J. Bakker, J. Helder (2008)
Small subunit ribosomal DNA-based phylogeny of basal Chromadoria (Nematoda) suggests that transitions from marine to terrestrial habitats (and vice versa) require relatively simple adaptations.Molecular phylogenetics and evolution, 48 2
(2015)
PCR Sequencing of approx. 680 bp (amplicon size including primers) of the translation elongation factor 1 alpha (TEF1) gene is adapted from Jones et al
Conrad Schocha, Keith Seifertb, Sabine Huhndorfc, Vincent Robertd, John Spougea, C. Levesqueb, W. Chenb, Fungal Consortiuma (2012)
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for FungiProceedings of the National Academy of Sciences, 109
(2008)
Small subunit ribosomal DNA-based
(1999)
PCR sequencing of 434 bp (amplicon size including primers) of the translation elongation factor 1-a (TEF1) gene, adapted from Carbone
J. Groenewald, C. Nakashima, J. Nishikawa, H. Shin, J. Park, A. Jama, M. Groenewald, U. Braun, P. Crous, P. Crous (2012)
Species concepts in Cercospora: spotting the weeds among the rosesStudies in Mycology, 75
(2005)
Development of PCR
O. Folmer, M. Black, W. Hoeh, R. Lutz, R. Vrijenhoek (1994)
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.Molecular marine biology and biotechnology, 3 5
L. Oliveira, T. Harrington, R. Freitas, D. Mcnew, A. Alfenas (2015)
Ceratocystis tiliae sp. nov., a wound pathogen on Tilia americanaMycologia, 107
W. Chen, Z. Djama, M. Coffey, F. Martin, G. Bilodeau, G. Bilodeau, L. Radmer, G. Denton, C. Lévesque (2013)
Membrane-based oligonucleotide array developed from multiple markers for the detection of many Phytophthora species.Phytopathology, 103 1
O. Correspondent (1967)
Chloroplast DNANature, 216
Mehrdad Hajibabaei, D. Janzen, J. Burns, W. Hallwachs, P. Hebert (2006)
DNA barcodes distinguish species of tropical Lepidoptera.Proceedings of the National Academy of Sciences of the United States of America, 103 4
Hebert (2003)
Biological identifications through DNA barcodesProceedings of the Royal Society of London B: Biological Sciences, 270
(1999)
by sequencing of a partial 309–350 bp fragment using the two reverse primers
(2013)
PCR sequencing of approximately 450 bp (amplicon size including primers) of the nuclear beta-tubulin (TUB2) gene
(2007)
PCR amplification 765 bp (amplicon size including primers) of the gyrase subunit B (gyrB) gene for Xanthomonas spp
(2006)
Phylum-wide analysis
O. Makarova, N. Contaldo, S. Paltrinieri, Geofrey Kawube, A. Bertaccini, M. Nicolaisen (2012)
DNA Barcoding for Identification of ‘Candidatus Phytoplasmas’ Using a Fragment of the Elongation Factor Tu GenePLoS ONE, 7
W. Kress, David Erickson, F. Jones, N. Swenson, Rolando Pẽrez, O. Sanjur, E. Bermingham (2009)
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in PanamaProceedings of the National Academy of Sciences, 106
(2009)
PCR amplification of approximately 905 bp (amplicon size including primers) of the avirulence protein (avrBs2) gene for Xanthomonas spp
(2009)
PCR amplification of approx. 905 bp (amplicon size including primers) of the avirulence protein gene (avrBs2) for Xanthomonas pathovar identification
P. Hebert, E. Penton, J. Burns, D. Janzen, W. Hallwachs (2004)
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator.Proceedings of the National Academy of Sciences of the United States of America, 101 41
P. Lemey, M. Salemi, A. Vandamme (2009)
The Phylogenetic Handbook: List of contributors
S Ratnasingham, PDN Hebert (2007)
BOLD: The Barcode of Life Data System (www.barcodinglife.org), 7
P. Hollingsworth, L. Forrest, J. Spouge, Mehrdad Hajibabaei, S. Ratnasingham, M. BANK, M. Chase, R. Cowan, David Erickson, A. Fazekas, S. Graham, K. James, Ki-Joong Kim, W. Kress, Harald Schneider, Jonathan AlphenStahl, S. Barrett, C. Berg, D. Bogarín, K. Burgess, K. Cameron, M. Carine, J. Chacón, Alexandra Clark, J. Clarkson, F. Conrad, Dion Devey, C. Ford, T. Hedderson, M. Hollingsworth, B. Husband, L. Kelly, Prasad Kesanakurti, Jung Kim, Young-Dong Kim, R. Lahaye, Hae-Lim Lee, D. Long, S. Madriñán, O. Maurin, I. Meusnier, S. Newmaster, Chongh-Wook Park, Diana Percy, G. Petersen, J. Richardson, G. Salazar, V. Savolainen, O. Seberg, Michael Wilkinson, Dong-Keun Yi, D. Little (2009)
A DNA barcode for land plantsProceedings of the National Academy of Sciences, 106
G. Robideau, A. Cock, M. Coffey, H. Voglmayr, H. Brouwer, K. Bala, David Chitty, N. Désaulniers, Quinn Eggertson, C. Gachon, Chia-Hui Hu, F. Küpper, Tara Rintoul, E. Sarhan, E. Verstappen, Yonghong Zhang, P. Bonants, J. Ristaino, C. Lévesque (2011)
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacerMolecular Ecology Resources, 11
P Lemey, M Marco Salemi, A Irvine Vandamme (2009)
The Phylogenetic Handbook, A Practical Approach to Phylogenetic Analysis and Hypothesis Testing
(1990)
Amplification and direct
S. Jones, F. Hay, T. Harrington, S. Pethybridge (2011)
First Report of Boeremia Blight Caused by Boeremia exigua var. exigua on Pyrethrum in Australia.Plant disease, 95 11
U. Edwards, Till Rogall, H. Blöcker, Monica Emde, E. Böttger (1989)
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA.Nucleic acids research, 17 19
(2006)
subunit I (COI) gene of arthropods adapted from Hebert et al
N Parkinson, V Aritua, J Heeney, C Cowie, J Bew, D Stead (2007)
Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequences, 57
Benson (2013)
GenBankNucleic Acids Research, 41
I. Carbone, L. Kohn (1999)
A method for designing primer sets for speciation studies in filamentous ascomycetesMycologia, 91
J. Germain, C. Chatot, I. Meusnier, E. Artige, J. Rasplus, A. Cruaud (2013)
Molecular identification of Epitrix potato flea beetles (Coleoptera: Chrysomelidae) in Europe and North America.Bulletin of entomological research, 103 3
(2007)
PCR amplification of 803 bp (amplicon size including primers) of the DNA mismatch repair protein (mutS) gene for Ralstonia spp
M. Holterman, A. Wurff, S. Elsen, H. Megen, T. Bongers, O. Holovachov, J. Bakker, J. Helder (2006)
Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown Clades.Molecular biology and evolution, 23 9
(2005)
B (gyrB) gene for Clavibacter michiganensis spp
K. Richert, E. Brambilla, E. Stackebrandt (2005)
Development of PCR primers specific for the amplification and direct sequencing of gyrB genes from microbacteria, order Actinomycetales.Journal of microbiological methods, 60 1
Hajri (2009)
A “Repertoire for Repertoire” Hypothesis: Repertoires of type three effectors are candidate determinants of host specificity in XanthomonasPLoS One, 4
Min Hu, J. Höglund, N. Chilton, Xingquan Zhu, R. Gasser (2002)
Mutation scanning analysis of mitochondrial cytochrome c oxidase subunit 1 reveals limited gene flow among bovine lungworm subpopulations in SwedenELECTROPHORESIS, 23
T. Coenye, E. Falsen, M. Vancanneyt, B. Hoste, J. Govan, K. Kersters, P. Vandamme (1999)
Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov.International journal of systematic bacteriology, 49 Pt 2
(1994)
PCR-sequencing of 709 bp (amplicon size including primers) of the mitochondrial cytochrome c oxidase subunit I (COI) gene of arthropods
(2002)
Systematics and evolution of Tarasa (Malvaceae)
Bulletin OEPP/EPPO Bulletin (2016) 46 (3), 501–537 ISSN 0250-8052. DOI: 10.1111/epp.12344 European and Mediterranean Plant Protection Organization Organisation Europe´enne et Me´diterrane´enne pour la Protection des Plantes PM 7/129 (1) Diagnostics Diagnostic PM 7/129 (1) DNA barcoding as an identification tool for a number of regulated pests Specific scope conjunction with PM 7/76 Use of EPPO diagnostic protocols. This Standard describes the use of DNA barcoding proto- cols in support of the identification of a number of regulated pests and invasive plant species comparing Specific approval and amendment DNA barcode regions with those deposited in publically 2016-09 available sequence databases. It should be used in prokaryotes (a novelty in the DNA barcoding field) were 1. Introduction developed and validated within the Quarantine Organisms DNA barcoding is a generic diagnostic method that uses a Barcoding of Life (QBOL) Project financed by the 7th short standardized genetic marker in an organism’s DNA to Framework Programme of the European Union. Within the aid identification at a certain taxonomic level. The chosen DNA barcoding EUPHRESCO II project, test protocols for marker region should reflect the group taxonomy of the tar- several quarantine pests and invasive plant species were get species. Therefore, the marker region
EPPO Bulletin – Wiley
Published: Dec 1, 2016
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.