Access the full text.
Sign up today, get DeepDyve free for 14 days.
Pinkel (2005)
Comparative genomic hybridizationAnnu Rev Genomics Hum Genet, 6
R. Redon, S. Ishikawa, Karen Fitch, L. Feuk, L. Feuk, G. Perry, T. Andrews, H. Fiegler, M. Shapero, A. Carson, A. Carson, Wenwei Chen, Eun Cho, Stephanie Dallaire, J. Freeman, J. González, M. Gratacós, Jing Huang, Dimitrios Kalaitzopoulos, D. Komura, J. MacDonald, C. Marshall, C. Marshall, R. Mei, Lyndal Montgomery, Keunihiro Nishimura, Kohji Okamura, Kohji Okamura, F. Shen, M. Somerville, J. Tchinda, A. Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, T. Zerjal, Jane Zhang, L. Armengol, D. Conrad, X. Estivill, X. Estivill, C. Tyler-Smith, N. Carter, H. Aburatani, Charles Lee, Charles Lee, K. Jones, S. Scherer, S. Scherer, M. Hurles (2006)
Global variation in copy number in the human genomeNature, 444
D. Langenau, H. Feng, S. Berghmans, J. Kanki, J. Kutok, A. Look (2005)
Cre/lox-regulated transgenic zebrafish model with conditional myc-induced T cell acute lymphoblastic leukemiaProceedings of the National Academy of Sciences of the United States of America, 102
S. Chiba (1998)
Homeobox genes in normal hematopoiesis and leukemogenesis.International journal of hematology, 68 4
S. Solinas‐Toldo, S. Lampel, S. Stilgenbauer, J. Nickolenko, A. Benner, H. Döhner, T. Cremer, P. Lichter (1997)
Matrix‐based comparative genomic hybridization: Biochips to screen for genomic imbalancesGenes, 20
Jörg Boom, M. Wolter, R. Kuick, David Misek, A. Youkilis, D. Wechsler, C. Sommer, G. Reifenberger, S. Hanash (2003)
Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction.The American journal of pathology, 163 3
K. Fitzgerald, M. Diaz (1999)
MLL2: A new mammalian member of the trx/MLL family of genes.Genomics, 59 2
Y. Ruano, M. Mollejo, T. Ribalta, C. Fiaño, F. Camacho, E. Gómez, Ángel Lope, J. Hernández-Moneo, P. Martı́nez, B. Meléndez (2006)
Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profilingMolecular Cancer, 5
J. Sebat, B. Lakshmi, J. Troge, Joan Alexander, Janet Young, P. Lundin, S. Månér, H. Massa, M. Walker, M. Chi, N. Navin, R. Lucito, J. Healy, J. Hicks, Kenny Ye, Andrew Reiner, T. Gilliam, B. Trask, N. Patterson, A. Zetterberg, M. Wigler (2004)
Large-Scale Copy Number Polymorphism in the Human GenomeScience, 305
D. Langenau, D. Traver, A. Ferrando, J. Kutok, J. Aster, J. Kanki, Shuo Lin, E. Prochownik, N. Trede, L. Zon, A. Look (2003)
Myc-Induced T Cell Leukemia in Transgenic ZebrafishScience, 299
J. Freeman, Adeola Adeniyi, R. Banerjee, Stephanie Dallaire, Sean Maguire, J. Chi, B. Ng, Cinthya Zepeda, C. Scott, S. Humphray, J. Rogers, Yi Zhou, L. Zon, N. Carter, Fengtang Yang, Charles Lee (2007)
Definition of the zebrafish genome using flow cytometry and cytogenetic mappingBMC Genomics, 8
Shin-ichiro Fujiwara, Y. Yamashita, Y. Choi, Hideki Watanabe, K. Kurashina, M. Soda, Munehiro Enomoto, Hisashi Hatanaka, S. Takada, K. Ozawa, H. Mano (2007)
Transforming activity of purinergic receptor P2Y, G protein coupled, 8 revealed by retroviral expression screeningLeukemia & Lymphoma, 48
Jiangzheng Li, Tao Jiang, J. Mao, A. Balmain, L. Peterson, Charles Harris, P. Rao, P. Havlak, R. Gibbs, W. Cai (2004)
Genomic segmental polymorphisms in inbred mouse strainsNature Genetics, 36
S. Lam, Y. Wu, V. Vega, L. Miller, J. Spitsbergen, Yan Tong, Huiqing Zhan, K. Govindarajan, Serene Lee, Sinnakarupan Mathavan, K. Murthy, D. Buhler, E. Liu, Z. Gong (2006)
Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progressionNature Biotechnology, 24
K. Krause, S. Karger, S. Sheu, T. Aigner, R. Kursawe, O. Gimm, K. Schmid, H. Dralle, D. Fuhrer (2008)
Evidence for a role of the amyloid precursor protein in thyroid carcinogenesis.The Journal of endocrinology, 198 2
E. Patton, H. Widlund, J. Kutok, K. Kopani, J. Amatruda, R. Murphey, S. Berghmans, Elizabeth Mayhall, D. Traver, C. Fletcher, J. Aster, S. Granter, A. Look, Charles Lee, D. Fisher, L. Zon (2005)
BRAF Mutations Are Sufficient to Promote Nevi Formation and Cooperate with p53 in the Genesis of MelanomaCurrent Biology, 15
D. Adams, E. Dermitzakis, Tony Cox, James Smith, R. Davies, R. Banerjee, J. Bonfield, J. Mullikin, Y. Chung, J. Rogers, A. Bradley (2005)
Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strainsNature Genetics, 37
A. Kallioniemi, O. Kallioniemi, D. Sudar, D. Rutovitz, J. Gray, F. Waldman, D. Pinkel (1992)
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors.Science, 258 5083
B. Williams (1996)
Comparative genomic hybridization.Methods in molecular medicine, 6
G. Hodgson, J. Hager, S. Volik, S. Hariono, M. Wernick, D. Moore, D. Albertson, D. Pinkel, C. Collins, D. Hanahan, J. Gray (2001)
Genome scanning with array CGH delineates regional alterations in mouse islet carcinomasNature Genetics, 29
G. Lieschke, P. Currie (2007)
Animal models of human disease: zebrafish swim into viewNature Reviews Genetics, 8
D. Langenau, Matthew Keefe, N. Storer, J. Guyon, J. Kutok, X. Le, W. Goessling, D. Neuberg, L. Kunkel, L. Zon (2007)
Effects of RAS on the genesis of embryonal rhabdomyosarcoma.Genes & development, 21 11
A. Iafrate, L. Feuk, Miguel Rivera, M. Listewnik, Patricia Donahoe, Y. Qi, Stephen Scherer, Charles Lee (2004)
Detection of large-scale variation in the human genomeNature Genetics, 36
H. Fiegler, R. Redon, N. Carter (2007)
Construction and use of spotted large-insert clone DNA microarrays for the detection of genomic copy number changesNature Protocols, 2
S. Berghmans, Cicely Jette, D. Langenau, Karl Hsu, R. Stewart, T. Look, J. Kanki (2005)
Making waves in cancer research: new models in the zebrafish.BioTechniques, 39 2
B. Ryu, Dave Kim, A. DeLuca, R. Alani (2007)
Comprehensive Expression Profiling of Tumor Cell Lines Identifies Molecular Signatures of Melanoma ProgressionPLoS ONE, 2
Hua-Chuan Zheng, K. Tsuneyama, Hiroyuki Takahashi, Shigeharu Miwa, T. Sugiyama, B. Popivanova, C. Fujii, K. Nomoto, N. Mukaida, Y. Takano (2008)
Aberrant Pim-3 expression is involved in gastric adenoma–adenocarcinoma sequence and cancer progressionJournal of Cancer Research and Clinical Oncology, 134
Suming Huang, Y. Qiu, R. Stein, S. Brandt (1999)
p300 functions as a transcriptional coactivator for the TAL1/SCL oncoproteinOncogene, 18
N. Nowak, D. Gaile, J. Conroy, D. McQuaid, J. Cowell, R. Carter, M. Goggins, R. Hruban, A. Maitra (2005)
Genome-wide aberrations in pancreatic adenocarcinoma.Cancer genetics and cytogenetics, 161 1
T. Graubert, Patrick Cahan, Deepa Edwin, R. Selzer, T. Richmond, P. Eis, W. Shannon, Xia Li, H. McLeod, J. Cheverud, T. Ley (2006)
A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse GenomePLoS Genetics, 3
D. Pinkel, R. Segraves, D. Sudar, S. Clark, I. Poole, D. Kowbel, C. Collins, W. Kuo, Chira Chen, Y. Zhai, S. Dairkee, B. Ljung, J. Gray, D. Albertson (1998)
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarraysNature Genetics, 20
B. Lakshmi, Ira Hall, Christopher Egan, Joan Alexander, A. Leotta, J. Healy, L. Zender, M. Spector, W. Xue, S. Lowe, M. Wigler, R. Lucito (2006)
Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens.Proceedings of the National Academy of Sciences of the United States of America, 103 30
Jonathan Davies, Ian Wilson, W. Lam (2005)
Array CGH technologies and their applications to cancer genomesChromosome Research, 13
G. Hegde, Corey Munger, K. Emanuel, A. Joshi, T. Greiner, D. Weisenburger, J. Vose, S. Joshi (2008)
Targeting of sonic hedgehog-GLI signaling: a potential strategy to improve therapy for mantle cell lymphomaMolecular Cancer Therapeutics, 7
G. Perry, J. Tchinda, S. McGrath, Junjun Zhang, S. Picker, Angela Cáceres, A. Iafrate, C. Tyler-Smith, S. Scherer, E. Eichler, E. Eichler, A. Stone, Charles Lee (2006)
Hotspots for copy number variation in chimpanzees and humans.Proceedings of the National Academy of Sciences of the United States of America, 103 21
Sandrine Sander, L. Bullinger, Åsa Karlsson, S. Giuriato, T. Hernandez-Boussard, D. Felsher, J. Pollack (2005)
Comparative genomic hybridization on mouse cDNA microarrays and its application to a murine lymphoma modelOncogene, 24
W. Cai, J. Mao, C. Chow, Shamsha Damani, A. Balmain, A. Bradley (2002)
Genome-wide detection of chromosomal imbalances in tumors using BAC microarraysNature Biotechnology, 20
D. Bodmer, M. Schepens, M. Eleveld, E. Schoenmakers, A. Kessel (2003)
Disruption of a novel gene, DIRC3, and expression of DIRC3‐HSPBAP1 fusion transcripts in a case of familial renal cell cancer and t(2;3)(q35;q21)Genes, 38
J. Amillet, D. Ferbus, F. Real, C. Antony, M. Muleris, T. Gress, G. Goubin (2006)
Characterization of human Rab20 overexpressed in exocrine pancreatic carcinoma.Human pathology, 37 3
J. Maydan, S. Flibotte, M. Edgley, J. Lau, R. Selzer, T. Richmond, Nathan Pofahl, James Thomas, D. Moerman (2007)
Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization.Genome research, 17 3
L. Garraway, H. Widlund, M. Rubin, G. Getz, Aaron Berger, Sridhar Ramaswamy, R. Beroukhim, D. Milner, S. Granter, Jinyan Du, Charles Lee, S. Wagner, Cheng Li, T. Golub, D. Rimm, M. Meyerson, D. Fisher, W. Sellers (2005)
Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanomaNature, 436
C. Fujii, Y. Nakamoto, P. Lu, K. Tsuneyama, B. Popivanova, S. Kaneko, N. Mukaida (2005)
Aberrant expression of serine/threonine kinase Pim‐3 in hepatocellular carcinoma development and its role in the proliferation of human hepatoma cell linesInternational Journal of Cancer, 114
D. Bodmer, M. Eleveld, E. Kater‐Baats, I. Janssen, B. Janssen, M. Weterman, E. Schoenmakers, M. Nickerson, M. Linehan, B. Zbar, A. Kessel (2002)
Disruption of a novel MFS transporter gene, DIRC2, by a familial renal cell carcinoma-associated t(2;3)(q35;q21).Human molecular genetics, 11 6
Charles Lee, Amanda Smith (2004)
Molecular cytogenetic methodologies and a bacterial artificial chromosome (BAC) probe panel resource for genomic analyses in zebrafish.Methods in cell biology, 77
H. Lawrence, G. Sauvageau, R. Humphries, C. Largman (1996)
The Role of HOX Homeobox Genes in Normal and Leukemic HematopoiesisSTEM CELLS, 14
Ying-yi Li, B. Popivanova, Y. Nagai, H. Ishikura, C. Fujii, N. Mukaida (2006)
Pim-3, a proto-oncogene with serine/threonine kinase activity, is aberrantly expressed in human pancreatic cancer and phosphorylates bad to block bad-mediated apoptosis in human pancreatic cancer cell lines.Cancer research, 66 13
J. Curtin, J. Fridlyand, T. Kageshita, Hetal Patel, K. Busam, H. Kutzner, Kwang-Hyun Cho, S. Aiba, E. Bröcker, P. Leboit, D. Pinkel, B. Bastian (2005)
Distinct sets of genetic alterations in melanoma.The New England journal of medicine, 353 20
H. Feng, D. Langenau, Jennifer Madge, A. Quinkertz, A. Gutierrez, D. Neuberg, J. Kanki, A. Look (2007)
Heat‐shock induction of T‐cell lymphoma/leukaemia in conditional Cre/lox‐regulated transgenic zebrafishBritish Journal of Haematology, 138
R. Prasad, A. Zhadanov, Y. Sedkov, F. Bullrich, T. Druck, R. Rallapalli, T. Yano, H. Alder, C. Croce, K. Huebner, A. Mazo, E. Canaani (1997)
Structure and expression pattern of human ALR, a novel gene with strong homology to ALL-1 involved in acute leukemia and to Drosophila trithoraxOncogene, 15
J. Freeman, G. Perry, L. Feuk, R. Redon, S. Mccarroll, D. Altshuler, H. Aburatani, K. Jones, C. Tyler-Smith, M. Hurles, N. Carter, S. Scherer, Charles Lee (2006)
Copy number variation: New insights in genome diversityGenome Research, 16
William Lin, Alissa Baker, R. Beroukhim, W. Winckler, W. Feng, J. Marmion, E. Laine, H. Greulich, Hsiuyi Tseng, C. Gates, F. Hodi, G. Dranoff, W. Sellers, Roman Thomas, M. Meyerson, T. Golub, R. Dummer, M. Herlyn, G. Getz, L. Garraway (2008)
Modeling genomic diversity and tumor dependency in malignant melanoma.Cancer research, 68 3
Rachael Thomas, Shannon Duke, Stephanie Bloom, Tessa Breen, Andrea Young, E. Feiste, E. Seiser, P. Tsai, C. Langford, P. Ellis, E. Karlsson, K. Lindblad-Toh, M. Breen (2007)
A cytogenetically characterized, genome-anchored 10-Mb BAC set and CGH array for the domestic dog.The Journal of heredity, 98 5
The zebrafish is emerging as a prominent model system for studying the genetics of human development and disease. Genetic alterations that underlie each mutant model can exist in the form of single base changes, balanced chromosomal rearrangements, or genetic imbalances. To detect genetic imbalances in an unbiased genome‐wide fashion, array comparative genomic hybridization (CGH) can be used. We have developed a 5‐Mb resolution array CGH platform specifically for the zebrafish. This platform contains 286 bacterial artificial chromosome (BAC) clones, enriched for orthologous sequences of human oncogenes and tumor suppressor genes. Each BAC clone has been end‐sequenced and cytogenetically assigned to a specific location within the zebrafish genome, allowing for ease of integration of array CGH data with the current version of the genome assembly. This platform has been applied to three zebrafish cancer models. Significant genomic imbalances were detected in each model, identifying different regions that may potentially play a role in tumorigenesis. Hence, this platform should be a useful resource for genetic dissection of additional zebrafish developmental and disease models as well as a benchmark for future array CGH platform development. © 2008 Wiley‐Liss, Inc.
Genes, Chromosomes and Cancer – Wiley
Published: Feb 1, 2009
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.