Access the full text.
Sign up today, get DeepDyve free for 14 days.
Gabriel Paës, J. Berrin, J. Beaugrand (2012)
GH11 xylanases: Structure/function/properties relationships and applications.Biotechnology advances, 30 3
HJ Sun, S Yoshida, NH Park, I Kusakabe (2002)
Preparation of (1→4)-β-D-xylooligosaccharides from an acid hydrolysate of cotton-seed xylan: suitability of cotton-seed xylan as a starting material for the preparation of (1→4)-β-D-xylooligosaccharidesCarbohydr Res, 337
A. Pollet, J. Delcour, C. Courtin (2010)
Structural determinants of the substrate specificities of xylanases from different glycoside hydrolase familiesCritical Reviews in Biotechnology, 30
K. Laere, G. Beldman, A. Voragen (1997)
A new arabinofuranohydrolase from Bifidobacterium adolescentis able to remove arabinosyl residues from double-substituted xylose units in arabinoxylanApplied Microbiology and Biotechnology, 47
Lyned Lasrado, Muralikrishna Gudipati (2013)
Purification and characterization of β-D-xylosidase from Lactobacillus brevis grown on xylo-oligosaccharides.Carbohydrate polymers, 92 2
T. Yui, K. Imada, N. Shibuya, K. Ogawa (1995)
Conformation of an arabinoxylan isolated from the rice endosperm cell wall by X-ray diffraction and a conformational analysis.Bioscience, biotechnology, and biochemistry, 59 6
K. Andrewartha, D. Phillips, B. Stone (1979)
Solution properties of wheat-flour arabinoxylans and enzymically modified arabinoxylansCarbohydrate Research, 77
M. Torruella, M. Flawiá, C. Eisenschlos, L. Vedia, C. Rubinstein, H. Torres (2006)
Purification and Characterization
E. Krieger, G. Vriend (2015)
New ways to boost molecular dynamics simulationsJournal of Computational Chemistry, 36
Marie-Helene Beylot, V. McKie, A. Voragen, Chantal Doeswijk-Voragen, H. Gilbert (2001)
The Pseudomonas cellulosa glycoside hydrolase family 51 arabinofuranosidase exhibits wide substrate specificity.The Biochemical journal, 358 Pt 3
Sindhu Mathew, E. Karlsson, P. Adlercreutz (2017)
Extraction of soluble arabinoxylan from enzymatically pretreated wheat bran and production of short xylo-oligosaccharides and arabinoxylo-oligosaccharides from arabinoxylan by glycoside hydrolase family 10 and 11 endoxylanases.Journal of biotechnology, 260
P. Falck, Anna Aronsson, Carl Grey, H. Stålbrand, E. Karlsson, P. Adlercreutz (2014)
Production of arabinoxylan-oligosaccharide mixtures of varying composition from rye bran by a combination of process conditions and type of xylanase.Bioresource technology, 174
Y. Duan, Chun Wu, S. Chowdhury, Mathew Lee, Guoming Xiong, Wei Zhang, Rong Yang, P. Cieplak, R. Luo, Tai-Sung Lee, J. Caldwell, Junmei Wang, P. Kollman (2003)
A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculationsJournal of Computational Chemistry, 24
Stijn Lagaert, A. Pollet, J. Delcour, R. Lavigne, C. Courtin, G. Volckaert (2010)
Substrate specificity of three recombinant α-L-arabinofuranosidases from Bifidobacterium adolescentis and their divergent action on arabinoxylan and arabinoxylan oligosaccharides.Biochemical and biophysical research communications, 402 4
H. Michlmayr, Johannes Hell, Cindy Lorenz, Stefan Böhmdorfer, T. Rosenau, W. Kneifel (2013)
Arabinoxylan Oligosaccharide Hydrolysis by Family 43 and 51 Glycosidases from Lactobacillus brevis DSM 20054Applied and Environmental Microbiology, 79
M. Izydorczyk, C. Biliaderis (1995)
Cereal arabinoxylans: advances in structure and physicochemical propertiesCarbohydrate Polymers, 28
F. Kormelink, H. Gruppen, R. Viëtor, A. Voragen (1993)
Mode of action of the xylan-degrading enzymes from Aspergillus awamori on alkali-extractable cereal arabinoxylans.Carbohydrate research, 249 2
M. Okazaki, S. Fujikawa, N. Matsumoto (1990)
Effect of Xylooligosaccharide on the Growth of BifidobacteriaBifidobacteria and Microflora, 9
(1995)
Determination of acid-insoluble lignin in biomass: chemical analysis and testing task laboratory analytical procedure (LAP–003)
V. Craeyveld, U. Holopainen, Emilia Selinheimo, K. Poutanen, J. Delcour, C. Courtin (2009)
Extensive dry ball milling of wheat and rye bran leads to in situ production of arabinoxylan oligosaccharides through nanoscale fragmentation.Journal of agricultural and food chemistry, 57 18
Alberto Amaretti, Tatiana Bernardi, Alan Leonardi, S. Raimondi, Simona Zanoni, M. Rossi, Springer-Verlag, Berlin Heidelberg
Applied Microbial and Cell Physiology
Oleg Trott, A. Olson (2009)
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingJournal of Computational Chemistry, 31
S. Macfarlane, G. Macfarlane, J. Cummings (2006)
Review article: prebiotics in the gastrointestinal tractAlimentary Pharmacology & Therapeutics, 24
G. Pell, E. Taylor, T. Gloster, J. Turkenburg, C. Fontes, L. Ferreira, T. Nagy, Samantha Clark, G. Davies, H. Gilbert (2004)
The Mechanisms by Which Family 10 Glycoside Hydrolases Bind Decorated Substrates*Journal of Biological Chemistry, 279
Y. Aiba, Nobuyuki Suzuki, A. Kabir, A. Takagi, Y. Koga (1998)
Lactic acid-mediated suppression of Helicobacter pylori by the oral administration of Lactobacillus salivarius as a probiotic in a gnotobiotic murine modelAmerican Journal of Gastroenterology, 93
J. Beaugrand, G. Chambat, Vicky Wong, F. Goubet, C. Rémond, Gabriel Paës, S. Benamrouche, P. Debeire, M. O’Donohue, B. Chabbert (2004)
Impact and efficiency of GH10 and GH11 thermostable endoxylanases on wheat bran and alkali-extractable arabinoxylans.Carbohydrate research, 339 15
M. Totani (1999)
[Lactic acid].Nihon rinsho. Japanese journal of clinical medicine, 57 Suppl
Helena Pastell, P. Westermann, A. Meyer, P. Tuomainen, M. Tenkanen (2009)
In vitro fermentation of arabinoxylan-derived carbohydrates by bifidobacteria and mixed fecal microbiota.Journal of agricultural and food chemistry, 57 18
P. Biely, M. Vršanská, M. Tenkanen, D. Kluepfel (1997)
Endo-β-1,4-xylanase families: differences in catalytic propertiesJournal of Biotechnology, 57
Helena Pastell (2010)
Preparation, structural analysis and prebiotic potential of arabinoxylo-oligosaccharides
B. McCleary, V. McKie, A. Draga, E. Rooney, D. Mangan, Jennifer Larkin (2015)
Hydrolysis of wheat flour arabinoxylan, acid-debranched wheat flour arabinoxylan and arabino-xylo-oligosaccharides by β-xylanase, α-L-arabinofuranosidase and β-xylosidase.Carbohydrate research, 407
M. Bray, A. Clarke (1992)
Action pattern of xylo-oligosaccharide hydrolysis by Schizophyllum commune xylanase A.European journal of biochemistry, 204 1
W. Kelly, A. Cookson, E. Altermann, S. Lambie, Rechelle Perry, Koon Teh, D. Otter, N. Shapiro, T. Woyke, S. Leahy (2016)
Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tractScientific Reports, 6
S. Benamrouche, D. Crônier, P. Debeire, B. Chabbert (2002)
A Chemical and Histological Study on the Effect of (1→4)-β-endo-xylanase Treatment on Wheat BranJournal of Cereal Science, 36
M. Schooneveld-Bergmans, G. Beldman, A. Voragen (1999)
Structural Features of (Glucurono)Arabinoxylans Extracted from Wheat Bran by Barium HydroxideJournal of Cereal Science, 29
A Amaretti, T Bernardi, A Leonardi, S Raimondi, S Zanoni, M Rossi (2013)
Fermentation of xylo-oligosaccharides by Bifidobacterium adolescentis DSMZ 18350: kinetics, metabolism, and β-xylosidase activitiesAppl Microbiol Biotechnol, 97
G. Morris, D. Goodsell, R. Halliday, R. Huey, W. Hart, R. Belew, A. Olson (1998)
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy functionJournal of Computational Chemistry, 19
M. Ejby, F. Fredslund, A. Vujičić‐Žagar, B. Svensson, D. Slotboom, M. Hachem (2013)
Structural basis for arabinoxylo‐oligosaccharide capture by the probiotic Bifidobacterium animalis subsp. lactis Bl‐04Molecular Microbiology, 90
Xiao-dong Pan, Xiao-dong Pan, Tian-xing Wu, L. Zhang, Li-sheng Cai, Z. Song (2009)
Influence of oligosaccharides on the growth and tolerance capacity of lactobacilli to simulated stress environmentLetters in Applied Microbiology, 48
C. Maes, J. Delcour (2002)
Structural characterisation of water-extractable and water-unextractable arabinoxylans in wheat bran.Journal of Cereal Science, 35
L. Malunga, T. Beta (2015)
Antioxidant capacity of arabinoxylan oligosaccharide fractions prepared from wheat aleurone using Trichoderma viride or Neocallimastix patriciarum xylanase.Food chemistry, 167
V. Craeyveld, Katrien Swennen, Emmie Dornez, T. Wiele, M. Marzorati, W. Verstraete, Yasmine Delaedt, O. Onagbesan, E. Decuypere, J. Buyse, B. Ketelaere, W. Broekaert, J. Delcour, C. Courtin (2008)
Structurally different wheat-derived arabinoxylooligosaccharides have different prebiotic and fermentation properties in rats.The Journal of nutrition, 138 12
M. Izydorczyk, C. Biliaderis (1994)
Studies on the structure of wheat-endosperm arabinoxylansCarbohydrate Polymers, 24
E. Krieger, G. Vriend (2014)
YASARA View—molecular graphics for all devices—from smartphones to workstationsBioinformatics, 30
R. Laskowski, M. Swindells (2011)
LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug DiscoveryJournal of chemical information and modeling, 51 10
D. Meng, Y. Ying, Xiao-hua Chen, Ming Lu, K. Ning, Lu-Shan Wang, Fu-Li Li (2015)
Distinct Roles for Carbohydrate-Binding Modules of Glycoside Hydrolase 10 (GH10) and GH11 Xylanases from Caldicellulosiruptor sp. Strain F32 in Thermostability and Catalytic EfficiencyApplied and Environmental Microbiology, 81
Anna Aronsson, Fatma Güler, M. Petoukhov, S. Crennell, D. Svergun, Javier Linares-Pastén, E. Karlsson (2018)
Structural insights of RmXyn10A - A prebiotic-producing GH10 xylanase with a non-conserved aglycone binding region.Biochimica et biophysica acta. Proteins and proteomics, 1866 2
M. Vardakou, Claire Dumon, J. Murray, P. Christakopoulos, D. Weiner, N. Juge, R. Lewis, H. Gilbert, J. Flint (2008)
Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases.Journal of molecular biology, 375 5
W. Broekaert, C. Courtin, K. Verbeke, T. Wiele, W. Verstraete, J. Delcour (2011)
Prebiotic and Other Health-Related Effects of Cereal-Derived Arabinoxylans, Arabinoxylan-Oligosaccharides, and XylooligosaccharidesCritical Reviews in Food Science and Nutrition, 51
E. Pettersen, Thomas Goddard, Conrad Huang, Gregory Couch, Daniel Greenblatt, E. Meng, T. Ferrin (2004)
UCSF Chimera—A visualization system for exploratory research and analysisJournal of Computational Chemistry, 25
Stijn Lagaert, A. Pollet, J. Delcour, R. Lavigne, C. Courtin, G. Volckaert (2011)
Characterization of two β-xylosidases from Bifidobacterium adolescentis and their contribution to the hydrolysis of prebiotic xylooligosaccharidesApplied Microbiology and Biotechnology, 92
Ellen Christensen, Tine Licht, Thomas Leser, Martin Bahl (2014)
Dietary Xylo-oligosaccharide stimulates intestinal bifidobacteria and lactobacilli but has limited effect on intestinal integrity in ratsBMC Research Notes, 7
L. Sá, M. Oliveira, M. Cammarota, A. Matos, V. Ferreira-Leitão (2011)
Simultaneous analysis of carbohydrates and volatile fatty acids by HPLC for monitoring fermentative biohydrogen productionInternational Journal of Hydrogen Energy, 36
J. Wong, R. Souza, C. Kendall, A. Emam, D. Jenkins (2006)
Colonic Health: Fermentation and Short Chain Fatty AcidsJournal of Clinical Gastroenterology, 40
S. Finegold, Zhaoping Li, P. Summanen, J. Downes, G. Thames, K. Corbett, S. Dowd, Michael Krak, D. Heber (2014)
Xylooligosaccharide increases bifidobacteria but not lactobacilli in human gut microbiota.Food & function, 5 3
Junhua Zhang, M. Siika‐aho, T. Puranen, M. Tang, M. Tenkanen, L. Viikari (2011)
Thermostable recombinant xylanases from Nonomuraea flexuosa and Thermoascus aurantiacus show distinct properties in the hydrolysis of xylans and pretreated wheat strawBiotechnology for Biofuels, 4
Xylooligosaccharides (XOS) and arabinoxylooligosaccharides (AXOS) were produced from the insoluble arabinoxylan fraction of pretreated wheat bran by endoxylanases. The glycoside hydrolase (GH) family 10 xylanases GsXyn10A from Geobacillus stearothermophilus and RmXyn10A-CM from Rhodothermus marinus produced the AXOS A3X, A2XX and A2 + 3XX in addition to XOS. RmXyn10A-CM also produced XA2 + 3XX due to its non-conserved aglycone region accommodating additional arabinose substitutions in subsite +2. The GH11 enzymes, Pentopan from Thermomyces lanuginosus and NpXyn11A from Neocallimastix patriciarum had minor structural differences affecting hydrogen bonds in subsites −3 and +3, with similar hydrolysis profiles producing XA3XX as major AXOS and minor amounts of XA2XX but different ratios of X3/X2. In vitro analysis of the prebiotic properties of (A)XOS produced by Pentopan revealed nearly complete uptake of X2 and X3 by the probiotic bacteria Lactobacillus brevis and Bifidobacterium adolescentis. In contrast to previous reports, the GH43 arabinofuranosidase BaAXHd-3 from B. adolescentis cleaved α-1,3-linked arabinose on some single substituted AXOS.
Applied Microbiology and Biotechnology – Springer Journals
Published: Feb 14, 2018
Access the full text.
Sign up today, get DeepDyve free for 14 days.