Using models to correct data: paleodiversity and the fossil record

Using models to correct data: paleodiversity and the fossil record Synthese https://doi.org/10.1007/s11229-018-1820-x S.I.: ABSTRACTION AND IDEALIZATION IN SCIENTIFIC MODELLING Using models to correct data: paleodiversity and the fossil record Alisa Bokulich Received: 14 August 2017 / Accepted: 17 May 2018 © Springer Science+Business Media B.V., part of Springer Nature 2018 Abstract Despite an enormous philosophical literature on models in science, surpris- ingly little has been written about data models and how they are constructed. In this paper, I examine the case of how paleodiversity data models are constructed from the fossil data. In particular, I show how paleontologists are using various model-based techniques to correct the data. Drawing on this research, I argue for the following related theses: first, the ‘purity’ of a data model is not a measure of its epistemic reliability. Instead it is the fidelity of the data that matters. Second, the fidelity of a data model in capturing the signal of interest is a matter of degree. Third, the fidelity of a data model can be improved ‘vicariously’, such as through the use of post hoc model-based correction techniques. And, fourth, data models, like theoretical models, should be assessed as adequate (or inadequate) for particular purposes. Keywords Paleontology · Paleobiology · Evolution · Data · http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Synthese Springer Journals

Using models to correct data: paleodiversity and the fossil record

Bokulich, Alisa
Synthese, Volume OnlineFirst – May 29, 2018
22 pages
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Publisher
Springer Journals
Copyright
Copyright © 2018 by Springer Science+Business Media B.V., part of Springer Nature
Subject
Philosophy; Philosophy of Science; Epistemology; Logic; Philosophy of Language; Metaphysics
ISSN
0039-7857
eISSN
1573-0964
D.O.I.
10.1007/s11229-018-1820-x
Publisher site
See Article on Publisher Site

Abstract

Synthese https://doi.org/10.1007/s11229-018-1820-x S.I.: ABSTRACTION AND IDEALIZATION IN SCIENTIFIC MODELLING Using models to correct data: paleodiversity and the fossil record Alisa Bokulich Received: 14 August 2017 / Accepted: 17 May 2018 © Springer Science+Business Media B.V., part of Springer Nature 2018 Abstract Despite an enormous philosophical literature on models in science, surpris- ingly little has been written about data models and how they are constructed. In this paper, I examine the case of how paleodiversity data models are constructed from the fossil data. In particular, I show how paleontologists are using various model-based techniques to correct the data. Drawing on this research, I argue for the following related theses: first, the ‘purity’ of a data model is not a measure of its epistemic reliability. Instead it is the fidelity of the data that matters. Second, the fidelity of a data model in capturing the signal of interest is a matter of degree. Third, the fidelity of a data model can be improved ‘vicariously’, such as through the use of post hoc model-based correction techniques. And, fourth, data models, like theoretical models, should be assessed as adequate (or inadequate) for particular purposes. Keywords Paleontology · Paleobiology · Evolution · Data ·

Journal

Synthese – Springer Journals

Published: May 29, 2018

References

  • Geographical, environmental, and intrinsic biotic controls on phanerozoic marine diversification
    Alroy, J
  • Quantitative methods in paleobiology
    Alroy, J
  • Comparing the geological and fossil records: Implications for biodiversity studies
    Benton, M; Dunhill, A; Lloyd, G; Marx, F
  • Introduction to paleobiology and the fossil record
    Benton, M; Harper, D
  • A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias
    Brocklehurst, N
  • Rarefaction and nonrandom spatial dispersion patterns
    Collins, M; Simberloff, D
  • Rock, bone, and ruin: An optimist’s guide to the historical sciences
    Currie, A
  • Changing the atmosphere: Expert knowledge and environmental governance
    Edwards, P
  • A vast machine: Computer models, climate data, and the politics of global warming
    Edwards, P
  • Models in paleobiology
    Eldredge, N; Gould, SJ
  • Elvis taxa
    Erwin, D; Droser, M
  • Perspective: Evolutionary patterns in the fossil record
    Foote, M
  • The population frequencies of species and the estimation of population parameters
    Good, IJ
  • The shape of evolution: A comparison of real and random clades
    Gould, SJ; Raup, D; Sepkoski, J; Schopf, T; Simberloff, D
  • The paleobiological revolution: Essays on the growth of modern paleontology
    Huss, J
  • Estimating paleodiversities: A test of taxic and phylogenetic methods
    Lane, A; Janis, C; Sepkoski, J
  • Data-centric biology: A philosophical study
    Leonelli, S
  • Springer handbook of model-based science
  • Current perspectives on the permian-triassic boundary and end-permian mass extinction: Preface
    Metcalfe, I; Isozaki, Y
  • Changing the atmosphere: Expert knowledge and environmental governance
    Norton, S; Suppe, F
  • Tree-based approaches to understanding history: Comments on ranks, rules, and the quality of the fossil record
    Norwell, M
  • Scientific models and adequacy for purpose
    Parker, W
  • Taxonomic diversity during the phanerozoic
    Raup, D
  • Taxanomic diversity estimation using rarefaction
    Raup, D
  • Dinosaurs in decline tens of millions of years before their final extinction
    Sakamoto, M; Benton, M; Venditti, C
  • ‘Residual diversity estimates’ do not correct for sampling bias in palaeodiversity data
    Sakamoto, M; Venditti, C; Benton, M
  • Compendium of fossil marine families
    Sepkoski, J
  • A kinetic model of phanerozoic taxanomic diversity. III. Post-paleozoic families and mass extinctions
    Sepkoski, J
  • Mass-extinction debates: How science works in a crisis
    Sepkoski, J
  • Reading the fossil record: The growth of paleobiology as an evolutionary discipline
    Sepkoski, D
  • ‘Replying life’s tape’: Simulations, metaphors, and historicity in Stephen Jay Gould’s view of life
    Sepkoski, D
  • ‘Towards a natural history of data’: Evolving practices and epistemologies of data in paleontology, 1800–2000
    Sepkoski, D
  • ‘Replaying life’s tape’: Simulations, metaphors, and historicity in Stephen Jay Gould’s view of life
    Sepkoski, D
  • The paleobiological revolution: Essays on the growth of modern paleontology
    Sepkoski, D; Ruse, M
  • Geological implications of large asteroids and comets on the earth
    Signor, P; Lipps, J
  • Systematics and the fossil record: Documenting evolutionary patterns
    Smith, A
  • The shape of the phanerozoic marine paleodiversity curve: How much can be predicted from the sedimentary rock record of Western Europe
    Smith, A; McGowan, A
  • Logic, methodology and philosophy of science: Proceedings of the 1960 international congress
    Suppes, P
  • Making prehistory: Historical science and the scientific realism debate. Cambridge studies in philosophy and biology
    Turner, D
  • Paleontology: A philosophical introduction
    Turner, D
  • The sauropods: Evolution and paleobiology
    Upchurch, P; Barrett, P
  • Scientific representation: Paradoxes of perspective
    Fraassen, B

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