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Unveiling the complete genome sequence of clerodendrum chlorotic spot virus, a putative dichorhavirus infecting ornamental plants

Unveiling the complete genome sequence of clerodendrum chlorotic spot virus, a putative... The genus Dichorhavirus includes plant-infecting rhabdoviruses with bisegmented genomes that are horizontally transmitted by false spider mites of the genus Brevipalpus. The complete genome sequences of three isolates of the putative dichorhavirus clerodendrum chlorotic spot virus were determined using next-generation sequencing (Illumina) and traditional RT-PCR. Their genome organization, sequence similarity and phylogenetic relationship to other viruses, and transmissibility by Brevipalpus yothersi mites support the assignment of these viruses to a new species of dichorhavirus, as suggested previously. New data are discussed stressing the reliability of the current rules for species demarcation and taxonomic status criteria within the genus Dichorhavirus. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Archives of Virology Springer Journals

Unveiling the complete genome sequence of clerodendrum chlorotic spot virus, a putative dichorhavirus infecting ornamental plants

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Publisher
Springer Journals
Copyright
Copyright © 2018 by Springer-Verlag GmbH Austria, part of Springer Nature
Subject
Biomedicine; Virology; Medical Microbiology; Infectious Diseases
ISSN
0304-8608
eISSN
1432-8798
DOI
10.1007/s00705-018-3857-z
pmid
29869032
Publisher site
See Article on Publisher Site

Abstract

The genus Dichorhavirus includes plant-infecting rhabdoviruses with bisegmented genomes that are horizontally transmitted by false spider mites of the genus Brevipalpus. The complete genome sequences of three isolates of the putative dichorhavirus clerodendrum chlorotic spot virus were determined using next-generation sequencing (Illumina) and traditional RT-PCR. Their genome organization, sequence similarity and phylogenetic relationship to other viruses, and transmissibility by Brevipalpus yothersi mites support the assignment of these viruses to a new species of dichorhavirus, as suggested previously. New data are discussed stressing the reliability of the current rules for species demarcation and taxonomic status criteria within the genus Dichorhavirus.

Journal

Archives of Virology – Springer Journals

Published: Jun 4, 2018

References

  • Dichorhavirus: a proposed new genus for Brevipalpus mite-transmitted, nuclear, bacilliform, bipartite, negative-strand RNA plant viruses
    Dietzgen, RG; Kuhn, JH; Clawson, AN
  • Chlorotic spots on Clerodendrum, a disease caused by a nuclear type of Brevipalpus (Acari: Tenuipalpidae) transmitted virus
    Kitajima, EW; Kubo, KS; Ferreira, PTO
  • Brevipalpus-transmitted plant virus and virus-like diseases: cytopathology and some recent cases
    Kitajima, EW; Chagas, CM; Rodrigues, JCV
  • Orchid fleck virus is a rhabdovirus with an unusual bipartite genome
    Kondo, H; Maeda, T; Shirako, Y; Tamada, T
  • Characterization of Coffee ringspot virus-Lavras: a model for an emerging threat to coffee production and quality
    Ramalho, TO; Figueira, AR; Sotero, AJ
  • Citrus leprosis virus N: a new dichorhavirus causing citrus leprosis disease
    Ramos-González, PL; Chabi-Jesus, C; Guerra-Peraza, O
  • Identification and characterization of citrus chlorotic spot virus, a new dichorhavirus associated with citrus leprosis-like symptoms
    Chabi-Jesus, C; Ramos-Gonzalez, P; Tassi, AD
  • The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins
    Dietzgen, RG; Kondo, H; Goodin, MM
  • Orchid fleck virus: Brevipalpus californicus mite transmission, biological properties and genome structure
    Kondo, H; Maeda, T; Tamada, T
  • Natural infection of several Coffea species and hybrids and Psilanthus ebracteolatus by the coffee ringspot virus (CoRSV)
    Kitajima, EW; Chagas, CM; Braghini, MT
  • Orchid fleck virus infecting orchids in Paraguay: first report and use of degenerate primers for its detection
    Ramos-González, PL; Sarubbi-Orue, H; Gonzales-Segnana, L
  • Detection of Brevipalpus-transmitted viruses in their mite vectors by RT-PCR
    Kubo, KS; Novelli, VM; Bastianel, M
  • Evaluation of the genetic variability of orchid fleck virus by single-strand conformational polymorphism analysis and nucleotide sequencing of a fragment from the nucleocapsid gene
    Kubo, KS; Stuart, RM; Freitas-Astúa, J
  • Detection and survey of coffee ringspot virus in Brazil
    Ramalho, TO; Figueira, AR; Wang, R
  • Primer3-new capabilities and interfaces
    Untergasser, A; Cutcutache, I; Koressaar, T
  • Multiple sequence alignment with the Clustal series of programs
    Chenna, R; Sugawara, H; Koike, T
  • Vector NTI, a balanced all-in-one sequence analysis suite
    Lu, G; Moriyama, EN
  • A possible occurrence of genome reassortment among bipartite rhabdoviruses
    Kondo, H; Hirota, K; Maruyama, K
  • Identification and molecular characterization of nuclear Citrus leprosis virus, a member of the proposed Dichorhavirus genus infecting multiple Citrus species in Mexico
    Roy, A; Stone, AL; Shao, J
  • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    Castresana, J
  • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    Talavera, G; Castresana, J; Kjer, K
  • Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
    Kearse, M; Moir, R; Wilson, A
  • MrBayes 3: Bayesian phylogenetic inference under mixed models
    Ronquist, F; Huelsenbeck, JP
  • Virus-vector relationship in the Citrus leprosis pathosystem
    Tassi, AD; Garita-Salazar, LC; Amorim, L
  • Microscopia electrónica em virologia vegetal Métodos para detectar patógenos sistémicos
    Kitajima, EW; Nome, CF
  • Species-wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with extensive mitochondrial COI polymorphism
    Navajas, M; Lagnel, J; Gutierrez, J; Boursot, P
  • Mitochondrial DNA and RAPD polymorphisms in the haploid mite Brevipalpus phoenicis (Acari: Tenuipalpidae)
    Rodrigues, JCV; Gallo-Meagher, M; Ochoa, R
  • Brevipalpus phoenicis (Geijskes) species complex (Acari: Tenuipalpidae)—a closer look
    Beard, JJ; Ochoa, R; Braswell, WE; Bauchan, GR
  • Diversity and genetic variation among Brevipalpus populations from Brazil and Mexico
    Sánchez-Velázquez, EJ; Santillán-Galicia, MT; Novelli, VM
  • Anatomy and Fine Structure of Brevipalpus Mites (Tenuipalpidae)—economically important plant-virus vectors
    Alberti, G; Kitajima, EW
  • Role bending: Complex relationships between viruses, hosts, and vectors related to citrus leprosis, an emerging disease
    Roy, A; Hartung, JS; Schneider, WL
  • First report of Brevipalpus papayensis Baker (Acari: Tenuipalpidae) as vector of Coffee ringspot virus and Citrus leprosis virus C
    Nunes, MA; Carvalho Mineiro, JL; Rogero, LA
  • MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets
    Kumar, S; Stecher, G; Tamura, K