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Sergei Pond, S. Frost (2005)
Datamonkey: rapid detection of selective pressure on individual sites of codon alignmentsBioinformatics, 21 10
M. Achon, N. Alonso-Dueñas, L. Serrano (2011)
Maize dwarf mosaic virus diversity in the Johnsongrass native reservoir and in maize: evidence of geographical, host and temporal differentiationPlant Pathology, 60
Gyöngyvér Gell, E. Balázs, Kathrin Petrik (2010)
Genetic diversity of Hungarian Maize dwarf mosaic virus isolatesVirus Genes, 40
B. Moury, C. Desbiez, M. Jacquemond, H. Lecoq (2006)
Genetic diversity of plant virus populations: towards hypothesis testing in molecular epidemiology.Advances in virus research, 67
F. Revers, O. Gall, T. Candresse, A. Maule (1999)
New Advances in Understanding the Molecular Biology of Plant/Potyvirus InteractionsMolecular Plant-microbe Interactions, 12
B. Moury (2010)
A new lineage sheds light on the evolutionary history of Potato virus Y.Molecular plant pathology, 11 1
Elizabeth Chare, Edward Holmes (2006)
A phylogenetic survey of recombination frequency in plant RNA virusesArchives of Virology, 151
I. Moreno, J. Malpica, J. Díaz-Pendón, E. Moriones, A. Fraile, F. García-Arenal (2004)
Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain.Virology, 318 1
T. Ogawa, Y. Tomitaka, A. Nakagawa, K. Ohshima (2008)
Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations.Virus research, 131 2
(1989)
Maize dwarf mosaic virus. Descriptions of plant viruses No 341
M. Achon, M. Sobrepere (2001)
Incidence of potyviruses in commercial maize fields and their seasonal cycles in Spain., 108
D. Martin, P. Lemey, M. Lott, V. Moulton, D. Posada, P. Lefeuvre (2010)
RDP3: a flexible and fast computer program for analyzing recombinationBioinformatics, 26
M. Nei, F. Tajima (1981)
DNA polymorphism detectable by restriction endonucleases.Genetics, 97 1
P. Pamilo, Nestor Bianchit (1993)
Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.Molecular biology and evolution, 10 2
B. Salvador, M. Delgadillo, P. Sáenz, J. García, C. Simón-Mateo (2008)
Identification of Plum pox virus pathogenicity determinants in herbaceous and woody hosts.Molecular plant-microbe interactions : MPMI, 21 1
B. Weir, C. Cockerham (1984)
ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTUREEvolution, 38
K. Ohshima, Y. Yamaguchi, R. Hirota, T. Hamamoto, K. Tomimura, Zhongyang Tan, T. Sano, F. Azuhata, J. Walsh, J. Fletcher, Jishuang Chen, A. Gera, A. Gibbs (2002)
Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread.The Journal of general virology, 83 Pt 6
J. Drake, J. Holland (1999)
Mutation rates among RNA viruses.Proceedings of the National Academy of Sciences of the United States of America, 96 24
C. Desbiez, H. Lecoq (2008)
Evidence for multiple intraspecific recombinants in natural populations of Watermelon mosaic virus (WMV, Potyvirus)Archives of Virology, 153
D. Bryant, V. Moulton (2004)
Neighbor-net: an agglomerative method for the construction of phylogenetic networks.Molecular biology and evolution, 21 2
K. Ohshima, Y. Tomitaka, J. Wood, Yoshiteru Minematsu, Hiromi Kajiyama, K. Tomimura, A. Gibbs (2007)
Patterns of recombination in turnip mosaic virus genomic sequences indicate hotspots of recombination.The Journal of general virology, 88 Pt 1
David Bryant, Vincent Moulton (2002)
NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks, 21
L. Excoffier, P. Smouse, J. Quattro (1992)
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.Genetics, 131 2
P Pamilo, NO Bianchi (1993)
Evolution of the Zfx and Zfy, genes: rates and interdependence between the genesJ Mol Evol, 10
M. Nei (1987)
Molecular Evolutionary Genetics
M. Achon, V. Medina, M. Shanks, P. Markham, G. Lomonossoff (1994)
Characterisation of a maize-infecting potyvirus from SpainEuropean Journal of Plant Pathology, 100
A. Gibbs, K. Ohshima (2010)
Potyviruses and the digital revolution.Annual review of phytopathology, 48
Jang-Kyun Seo, K. Ohshima, Hyeok-Geun Lee, Moonil Son, Hongsoo Choi, Su-Heon Lee, Seong-Han Sohn, Kook Kim (2009)
Molecular variability and genetic structure of the population of soybean mosaic virus based on the analysis of complete genome sequences.Virology, 393 1
K. Tomimura, J. Špak, N. Katis, C. Jenner, J. Walsh, A. Gibbs, K. Ohshima (2004)
Comparisons of the genetic structure of populations of Turnip mosaic virus in West and East Eurasia.Virology, 330 2
M. Achon, L. Serrano, N. Alonso-Dueñas, C. Porta (2007)
Complete genome sequences of Maize dwarf mosaic and Sugarcane mosaic virus isolates coinfecting maize in SpainArchives of Virology, 152
F. García-Arenal, A. Fraile, J. Malpica (2001)
Variability and genetic structure of plant virus populations.Annual review of phytopathology, 39
M. Kimura (1980)
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequencesJournal of Molecular Evolution, 16
The population genetics of maize dwarf mosaic virus (MDMV) in Spain was assessed by analysis of the P1-HC region. Restriction fragment length polymorphism analysis of 363 isolates revealed that the MDMV population consisted of 69 haplotypes. Sequence analysis of 112 isolates confirmed a high degree of nucleotide sequence diversity (0.143), which was higher for P1 than for the HC. Twelve sequences showed a single different recombination event. Selection pressure analysis revealed that the P1-HC region was under strong negative selection. The MDMV population was spatially structured but not structured temporally or by host. Phylogenetic analysis split the sequences into five major groups.
Archives of Virology – Springer Journals
Published: Dec 1, 2012
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