Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer_journal/the-genomic-organization-of-non-ltr-retrotransposons-lines-from-three-Ti8zcxbX9C
References (45)
-
J. Heslop-Harrison, A. Brandes, S. Taketa, T. Schmidt, A. Vershinin, E. Alkhimova, A. Kamm, R. Doudrick, T. Schwarzacher, A. Katsiotis, S. Kubis, Amar Kumar, S. Pearce, A. Flavell, G. Harrison (2004)
The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolutionGenetica, 100
-
A. Flavell, E. Dunbar, R. Anderson, S. Pearce, R. Hartley, A. Kumar (1992)
Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants.Nucleic acids research, 20 14
-
(1994)
Origin and Evolutionary Relationships of Retroelements -
TH Eickbush (1994)
The Evolutionary Biology of Viruses -
R. Marschalek, J. Hofmann, G. Schumann, R. Gösseringer, T. Dingermann (1992)
Structure of DRE, a retrotransposable element which integrates with position specificity upstream of Dictyostelium discoideum tRNA genesMolecular and Cellular Biology, 12
-
Andrea Brandes, J. Heslop-Harrison, A. Kamm, S. Kubis, R. Doudrick, Thomas Schmidt (2004)
Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiospermsPlant Molecular Biology, 33
-
T. Higashiyama, Y. Noutoshi, M. Fujie, Takashi Yamada (1997)
Zepp, a LINE‐like retrotransposon accumulated in the Chlorella telomeric regionThe EMBO Journal, 16
-
Y. Xiong, T. Eickbush (1990)
Origin and evolution of retroelements based upon their reverse transcriptase sequences.The EMBO Journal, 9
-
N. Saitou, M. Nei (1987)
The neighbor-joining method: a new method for reconstructing phylogenetic trees.Molecular biology and evolution, 4 4
-
S Kumar, K Tamura, M Nei (1993)
MEGA: Molecular Evolutionary Genetics Analysis -
P. Howe, K. Nagai, D. Neuhaus, G. Varani (1994)
NMR studies of U1 snRNA recognition by the N‐terminal RNP domain of the human U1A protein.The EMBO Journal, 13
-
Jimin Wang, LA Kohlstaedt, JM Friedman, MC Franklin, J. Wang, James Hartling, Akma Sattar, WH Konigsberg, M. Stahley, AB Kosek, T. Steitz, LF Silvian, SJ Smerdon (1992)
Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor.Science, 256 5065
-
Bruce Kimmel, K. Onesmo, OLE-MOIYOI, John Young (1987)
Ingi, a 5.2-kb dispersed sequence element from Trypanosoma brucei that carries half of a smaller mobile element at either end and has homology with mammalian LINEsMolecular and Cellular Biology, 7
-
T. Schmidt, C. Jung, M. Metzlaff (1991)
Distribution and evolution of two satellite DNAs in the genus BetaTheoretical and Applied Genetics, 82
-
B. Larder, S. Kemp, D. Purifoy (1989)
Infectious potential of human immunodeficiency virus type 1 reverse transcriptase mutants with altered inhibitor sensitivity.Proceedings of the National Academy of Sciences of the United States of America, 86 13
-
Beth Dombroski, S. Mathias, Elizabeth Nanthakumar, Alan Scott, H. Kazazian (1991)
Isolation of an active human transposable element.Science, 254 5039
-
S. Kubis, J. Heslop-Harrison, T. Schmidt (1997)
A Family of Differentially Amplified Repetitive DNA Sequences in the Genus Beta Reveals Genetic Variation in Beta vulgaris Subspecies and CultivarsJournal of Molecular Evolution, 44
-
P. SanMiguel, A. Tikhonov, Y. Jin, Natasha Motchoulskaia, Dmitrii Zakharov, A. Melake-Berhan, P. Springer, K. Edwards, Michael Lee, Z. Avramova, J. Bennetzen (1996)
Nested Retrotransposons in the Intergenic Regions of the Maize GenomeScience, 274
-
A. Lindauer, David Fraser, M. Brüderlein, R. Schmitt (1993)
Reverse transcriptase families and a copia‐like retrotransposon, Osser, in the green alga Volvox carteriFEBS Letters, 319
-
D. Voytas (1996)
Retroelements in Genome OrganizationScience, 274
-
D. Luan, Malka Korman, J. Jakubczak, T. Eickbush (1993)
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotranspositionCell, 72
-
J. Garrett, D. Knutzon, D. Carroll (1989)
Composite transposable elements in the Xenopus laevis genome.Molecular and cellular biology, 9 7
-
D. Fawcett, C. Lister, E. Kellett, David Finnegan (1986)
Transposable elements controlling I-R hybrid dysgenesis in D. melanogaster are similar to mammalian LINEsCell, 47
-
T. Schmidt, J. Heslop-Harrison (1996)
The physical and genomic organization of microsatellites in sugar beet.Proceedings of the National Academy of Sciences of the United States of America, 93 16
-
T. Schmidt, T. Schwarzacher, J. Heslop-Harrison (1994)
Physical mapping of rRNA genes by fluorescent in-situ hybridization and structural analysis of 5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris)Theoretical and Applied Genetics, 88
-
A. Flavell, Donald Smith, Amar Kumar (2004)
Extreme heterogeneity of Ty1-copia group retrotransposons in plantsMolecular and General Genetics MGG, 231
-
P. Lewis, Sudhir Kumar, K. Tamura, M. Nei (1995)
MEGA: Molecular Evolutionary Genetics Analysis, Version 1.02.Systematic Biology, 44
-
A. Feinberg, B. Vogelstein (1983)
A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.Analytical biochemistry, 132 1
-
AP Feinberg, B Vogelstein (1983)
A technique for radiolabelling DNArestriction endonuclease fragments to high specific activityAnn Biochem, 137
-
D. Voytas, M. Cummings, A. Konieczny, F. Ausubel, S. Rodermel (1992)
copia-like retrotransposons are ubiquitous among plants.Proceedings of the National Academy of Sciences of the United States of America, 89 15
-
CA Hutchinson, SC Hardies, DD Loeb, WR Shehee, MH Edgell (1989)
Mobile DNA -
T. Schmidt, S. Kubis, J. Heslop-Harrison (1995)
Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs andTy1-copia-like elements as major components of the genomeChromosome Research, 3
-
Z. Schwarz‐Sommer, L. Leclercq, E. Göbel, H. Saedler (1987)
Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposonsThe EMBO Journal, 6
-
J. Bennetzen (1996)
The contributions of retroelements to plant genome organization, function and evolution.Trends in microbiology, 4 9
-
P. Leeton, D. Smyth (1993)
An abundant LINE-like element amplified in the genome of Lilium speciosumMolecular and General Genetics MGG, 237
-
W. Burke, C. Calalang, T. Eickbush (1987)
The site-specific ribosomal insertion element type II of Bombyx mori (R2Bm) contains the coding sequence for a reverse transcriptase-like enzymeMolecular and Cellular Biology, 7
-
David Wright, N. Ke, Jan Smalle, B. Hauge, Howard Goodman, D. Voytas (1996)
Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana.Genetics, 142 2
-
T. Schmidt, J. Heslop-Harrison (1993)
Variability and evolution of highly repeated DNA sequences in the genus Beta.Genome, 36 6
-
R. Waugh, K. McLean, A. Flavell, S. Pearce, Amar Kumar, B. Thomas, W. Powell (1997)
Genetic distribution of Bare–1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)Molecular and General Genetics MGG, 253
-
S. Pearce, D. Li, A. Flavell, G. Harrison, J. Heslop-Harrison, A. Kumar (1996)
TheTy1-copia group retrotransposons inVicia species: copy number, sequence heterogeneity and chromosomal localisationMolecular and General Genetics MGG, 250
-
S. White, L. Habera, S. Wessler (1994)
Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression.Proceedings of the National Academy of Sciences of the United States of America, 91 25
-
H. Hirochika, R. Hirochika (1993)
Ty1-copia group retrotransposons as ubiquitous components of plant genomes.Idengaku zasshi, 68 1
-
H Hirochika, R Hirochika (1993)
Ty1copia group retrotransposons as ubiquitous components of plant genomesJpn J Genet, 68
-
J. Boeke (1997)
LINEs and Alus — the polyA connectionNature Genetics, 16
-
Y. Xiong, T. Eickbush (1988)
The site-specific ribosomal DNA insertion element R1Bm belongs to a class of non-long-terminal-repeat retrotransposonsMolecular and Cellular Biology, 8
- Publisher
- Springer Journals
- Copyright
- Copyright © 1998 by Kluwer Academic Publishers
- Subject
- Life Sciences; Biochemistry, general; Plant Sciences; Plant Pathology
- ISSN
- 0167-4412
- eISSN
- 1573-5028
- DOI
- 10.1023/A:1005973932556
- Publisher site
- See Article on Publisher Site
Abstract
We have isolated and characterized conserved regions of the reverse transcriptase gene from non-LTR retrotransposons, also called long interspersed nuclear elements (LINEs), from Beta vulgaris, B. lomatogona and B. nana. The novel elements show strong homology to other non-LTR retrotransposons from plants, man and animals. LINEs are present in all species of the genus Beta tested, but there was variation in copy number. Analysis by Southern hybridization and fluorescent in situ hybridization revealed the clustered organization of these retroelements in beet species. PCR amplification using degenerate primers to conserved motifs of the predicted LINE protein sequence enabled the cloning of LINEs from both Monocotyledonae (Allium cepa, Oryza sativa and Secale cereale) and Dicotyledonae (Nicotiana tabacum and Antirrhinum majus) indicating that LINEs are a universal feature of plant genomes. A dendrogram of fifteen new and six previously isolated sequences showed the high level of sequence divergence while revealing families characteristic of some genera. The genomic organization of non-LTR retrotransposons was examined more detailed in A. majus and O. sativa.
Journal
Plant Molecular Biology – Springer Journals
Published: Oct 6, 2004