Access the full text.
Sign up today, get DeepDyve free for 14 days.
V. Kusnetsov, R. Herrmann, O. Kulaeva, R. Oelmüller (1998)
Cytokinin stimulates and abscisic acid inhibits greening of etiolated Lupinus luteus cotyledons by affecting the expression of the light-sensitive protochlorophyllide oxidoreductaseMolecular and General Genetics MGG, 259
S. Kepinski, O. Leyser (2005)
The Arabidopsis F-box protein TIR1 is an auxin receptorNature, 435
H. Lam, S. Peng, G. Coruzzi (1994)
Metabolic Regulation of the Gene Encoding Glutamine-Dependent Asparagine Synthetase in Arabidopsis thaliana, 106
G. Symons, J. Reid (2002)
Hormone levels and response during de-etiolation in peaPlanta, 216
R. Finkelstein, S. Gibson (2002)
ABA and sugar interactions regulating development: cross-talk or voices in a crowd?Current opinion in plant biology, 5 1
L. Ma, Y. Gao, L. Qu, Z. Chen, J. Li, H. Zhao, X.W. Deng (2002)
Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in ArabidopsisPlant Cell, 14
M. Petracek, L. Dickey, T. Nguyen, C. Gatz, D. Sowinski, G. Allen, W. Thompson (1998)
Ferredoxin-1 mRNA is destabilized by changes in photosynthetic electron transport.Proceedings of the National Academy of Sciences of the United States of America, 95 15
R. Brouquisse, J. Gaudillère, Philippe Raymond (1998)
Induction of a carbon-starvation-related proteolysis in whole maize plants submitted to Light/Dark cycles and to extended darknessPlant physiology, 117 4
M. Taniguchi, Takatoshi Kiba, H. Sakakibara, C. Ueguchi, T. Mizuno, T. Sugiyama (1998)
Expression of Arabidopsis response regulator homologs is induced by cytokinins and nitrateFEBS Letters, 429
Dennis Lee, D. Polisensky, J. Braam (2004)
Genome-wide identification of touch- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes.The New phytologist, 165 2
Ligeng Ma, Jinming Li, Li-jia Qu, Janet Hager, Zhang-liang Chen, Hongyu Zhao, X. Deng (2001)
Light Control of Arabidopsis Development Entails Coordinated Regulation of Genome Expression and Cellular PathwaysThe Plant Cell Online, 13
G. Acevedo-Hernández, P. León, L. Herrera-Estrella (2005)
Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4.The Plant journal : for cell and molecular biology, 43 4
L. Hennig, C. Büche, K. Eichenberg, E. Schäfer (1999)
Dynamic properties of endogenous phytochrome A in Arabidopsis seedlings.Plant physiology, 121 2
P. Dijkwel, Patricia Kock, Rex Bezemer, P. Weisbeek, S. Smeekens (1996)
Sucrose Represses the Developmentally Controlled Transient Activation of the Plastocyanin Gene in Arabidopsis thaliana Seedlings, 110
Mingyi Jiang, Jianhua Zhang (2003)
Cross-talk between calcium and reactive oxygen species originated from NADPH oxidase in abscisic acid-induced antioxidant defence in leaves of maize seedlings.Plant, cell & environment, 26 6
C. Huijser, A. Kortstee, J. Pego, P. Weisbeek, E. Wisman, S. Smeekens (2000)
The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses.The Plant journal : for cell and molecular biology, 23 5
T. Pfannschmidt (2003)
Chloroplast redox signals: how photosynthesis controls its own genes.Trends in plant science, 8 1
S. Weatherwax, S. Williams, S. Tingay, E. Tobin (1998)
The phytochrome response of the Lemna gibba NPR1 gene is mediated primarily through changes in abscisic acid levels.Plant physiology, 116 4
Meng Chen, J. Chory, C. Fankhauser (2004)
Light signal transduction in higher plants.Annual review of genetics, 38
Wei Xu, Paul Campbell, Ajay Vargheese, J. Braam (1996)
The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression.The Plant journal : for cell and molecular biology, 9 6
Rhonda Feinbaum, F. Ausubel (1988)
Transcriptional regulation of the Arabidopsis thaliana chalcone synthase geneMolecular and Cellular Biology, 8
T. McNellis, A. Arnim, Takashi Araki, Y. Komeda, Simon Mis&a, Xing-Wang 'i (1994)
Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains.The Plant cell, 6
Tae-Houn Kim, Byung-Hoon Kim, A. Arnim (2002)
Repressors of photomorphogenesis.International review of cytology, 220
S. Rodermel, Sungsoon Park (2003)
Pathways of intracellular communication: tetrapyrroles and plastid-to-nucleus signaling.BioEssays : news and reviews in molecular, cellular and developmental biology, 25 7
Mikihiro Ogawa, A. Hanada, Y. Yamauchi, A. Kuwahara, Y. Kamiya, Shinjiro Yamaguchi (2003)
Gibberellin Biosynthesis and Response during Arabidopsis Seed Germination Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.011650.The Plant Cell Online, 15
Zhi-Yong Wang, E. Tobin (1998)
Constitutive Expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) Gene Disrupts Circadian Rhythms and Suppresses Its Own ExpressionCell, 93
Nigel Halford, S. Hey, Deveraj Jhurreea, S. Laurie, Rowan McKibbin, Yuhua Zhang, M. Paul (2003)
Highly conserved protein kinases involved in the regulation of carbon and amino acid metabolism.Journal of experimental botany, 55 394
U. Sweere, K. Eichenberg, J. Lohrmann, Virtudes Mira-Rodado, I. Bäurle, J. Kudla, F. Nagy, E. Schäfer, K. Harter (2001)
Interaction of the Response Regulator ARR4 with Phytochrome B in Modulating Red Light SignalingScience, 294
F. Nagy, E. Schäfer (2002)
Phytochromes control photomorphogenesis by differentially regulated, interacting signaling pathways in higher plants.Annual review of plant biology, 53
J. Sheen (1990)
Metabolic repression of transcription in higher plants.The Plant cell, 2
N. Avonce, B. Leyman, J. MASCORRO-GALLARDO, P. Dijck, J. Thevelein, G. Iturriaga (2004)
The Arabidopsis Trehalose-6-P Synthase AtTPS1 Gene Is a Regulator of Glucose, Abscisic Acid, and Stress Signaling1Plant Physiology, 136
D. Rhodes, Jianjun Yu, K. Shanker, Nandan Deshpande, Radhika Varambally, D. Ghosh, T. Barrette, A. Pandey, A. Chinnaiyan, P. Brown (2004)
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression.Proceedings of the National Academy of Sciences of the United States of America, 101 25
X. Deng, T. Caspar, P. Quail (1991)
cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis.Genes & development, 5 7
O. Thimm, O. Bläsing, Y. Gibon, A. Nagel, S. Meyer, Peter Krüger, J. Selbig, Lukas Müller, S. Rhee, M. Stitt (2004)
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.The Plant journal : for cell and molecular biology, 37 6
M. Baier, E. Ströher, K. Dietz (2004)
The acceptor availability at photosystem I and ABA control nuclear expression of 2-Cys peroxiredoxin-A in Arabidopsis thaliana.Plant & cell physiology, 45 8
Li Tang, Sumana Bhat, M. Petracek (2003)
Light Control of Nuclear Gene mRNA Abundance and Translation in Tobacco1Plant Physiology, 133
Joanne Chory, D. Reinecke, S. Sim, T. Washburn, M. Brenner (1994)
A Role for Cytokinins in De-Etiolation in Arabidopsis (det Mutants Have an Altered Response to Cytokinins), 104
C. Crosatti, P. Laureto, Roberto Bassi, L. Cattivelli (1999)
The interaction between cold and light controls the expression of the cold-regulated barley gene cor14b and the accumulation of the corresponding protein.Plant physiology, 119 2
W. Frommer (2004)
Faculty Opinions recommendation of A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness.
N. Olszewski, Tai-ping Sun, F. Gubler (2002)
Gibberellin signaling: biosynthesis, catabolism, and response pathways.The Plant cell, 14 Suppl
Y. Gibon, O. Blaesing, Jan Hannemann, P. Carillo, Melanie Höhne, J. Hendriks, N. Palacios, Joanna Cross, J. Selbig, M. Stitt (2004)
A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darknessw⃞The Plant Cell Online, 16
G.J. Bishop, C. Koncz (2002)
Brassinosteroids and plant steroid hormone signalingPlant Cell, 14
E. Hansen, M. Petracek, L. Dickey, W. Thompson (2001)
The 5' end of the pea ferredoxin-1 mRNA mediates rapid and reversible light-directed changes in translation in tobacco.Plant physiology, 125 2
J. Tepperman, M. Hudson, R. Khanna, T. Zhu, Sherman Chang, Xun Wang, P. Quail (2004)
Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation.The Plant journal : for cell and molecular biology, 38 5
S. Weatherwax, M. Ong, J. Degenhardt, E. Bray, E. Tobin (1996)
The Interaction of Light and Abscisic Acid in the Regulation of Plant Gene Expression, 111
A. Pepper, T. Delaney, Tracy Washburnt, D. Poole, J. Chory (1994)
DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized proteinCell, 78
N. Quaedvlieg, J. Dockx, Fred Rook, P. Weisbeek, S. Smeekens (1995)
The homeobox gene ATH1 of Arabidopsis is derepressed in the photomorphogenic mutants cop1 and det1.The Plant cell, 7
Jan Smalle, M. Haegman, J. Kurepa, M. Montagu, D. Straeten (1997)
Ethylene can stimulate Arabidopsis hypocotyl elongation in the light.Proceedings of the National Academy of Sciences of the United States of America, 94 6
M. Seki, Junko Ishida, M. Narusaka, M. Fujita, T. Nanjo, T. Umezawa, Asako Kamiya, Maiko Nakajima, A. Enju, Tetsuya Sakurai, Masakazu Satou, Kenji Akiyama, K. Yamaguchi-Shinozaki, Piero Carninci, J. Kawai, Y. Hayashizaki, K. Shinozaki (2002)
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarrayFunctional & Integrative Genomics, 2
F. Rolland, B. Moore, J. Sheen (2002)
Sugar sensing and signaling in PlantsPlant Cell, 14
J. Price, Ashverya Laxmi, S. Martin, Jyan-chyun Jang (2004)
Global Transcription Profiling Reveals Multiple Sugar Signal Transduction Mechanisms in ArabidopsisThe Plant Cell Online, 16
J. Sambrook, E. Fritsch, T. Maniatis (2001)
Molecular Cloning: A Laboratory Manual
H. Goda, S. Sawa, T. Asami, S. Fujioka, Y. Shimada, S. Yoshida (2004)
Comprehensive Comparison of Auxin-Regulated and Brassinosteroid-Regulated Genes in Arabidopsis[w]Plant Physiology, 134
Y. Kraepiel, P. Rousselin, B. Sotta, L. Kerhoas, J. Einhorn, M. Caboche, E. Miginiac (1994)
Analysis of phytochrome- and ABA-deficient mutants suggests that ABA degradation is controlled by light in Nicotiana plumbaginifoliaPlant Journal, 6
M. Eisen, P. Spellman, P. Brown, D. Botstein (1998)
Cluster analysis and display of genome-wide expression patterns.Proceedings of the National Academy of Sciences of the United States of America, 95 25
P. Okubara, E. Tobin (1991)
Isolation and Characterization of Three Genes Negatively Regulated by Phytochrome Action in Lemna gibba.Plant physiology, 96 4
J. Tepperman, Tong Zhu, H. Chang, X. Wang, P. Quail (2001)
Multiple transcription-factor genes are early targets of phytochrome A signalingProceedings of the National Academy of Sciences of the United States of America, 98
U. Bechtold, D. Murphy, P. Mullineaux (2004)
Arabidopsis Peptide Methionine Sulfoxide Reductase2 Prevents Cellular Oxidative Damage in Long NightsThe Plant Cell Online, 16
M. Ogawa, A. Hanada, Y. Yamauchi, A. Kuwahara, Y. Kamiya, S. Yamaguchi (2003)
Gibberellin biosynthesis and response during Arabidopsis seed germinationPlant Cell, 15
F. Arenas-Huertero, A. Arroyo, Li Zhou, J. Sheen, P. León (2000)
Analysis of Arabidopsis glucose insensitive mutants, gin5 and gin6, reveals a central role of the plant hormone ABA in the regulation of plant vegetative development by sugar.Genes & development, 14 16
L. Fan, Zhixin Zhao, S. Assmann (2004)
Guard cells: a dynamic signaling model.Current opinion in plant biology, 7 5
G. Serino, X. Deng (2003)
The COP9 signalosome: regulating plant development through the control of proteolysis.Annual review of plant biology, 54
M. Osterlund, C. Hardtke, N. Wei, X. Deng (2000)
Targeted destabilization of HY5 during light-regulated development of ArabidopsisNature, 405
Yoshiyuki Murata, Zhen-Ming Pei, I. Mori, Julian Schroeder (2001)
Abscisic acid activation of plasma membrane Ca(2+) channels in guard cells requires cytosolic NAD(P)H and is differentially disrupted upstream and downstream of reactive oxygen species production in abi1-1 and abi2-1 protein phosphatase 2C mutants.The Plant cell, 13 11
G. Bishop, C. Koncz (2002)
Brassinosteroids and Plant Steroid Hormone Signaling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001461.The Plant Cell Online, 14
Yuki Fujiki, Masaki Ito, I. Nishida, Akira Watanabe (2000)
Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of din gene expression in suspension-cultured cells of Arabidopsis.Plant physiology, 124 3
C. Haslekås, P. Grini, Silje Nordgard, T. Thorstensen, M. Viken, V. Nygaard, R. Aalen (2003)
ABI3 mediates expression of the peroxiredoxin antioxidant AtPER1 gene and induction by oxidative stressPlant Molecular Biology, 53
Yuehui He, H. Fukushige, D. Hildebrand, S. Gan (2002)
Evidence Supporting a Role of Jasmonic Acid in Arabidopsis Leaf Senescence1Plant Physiology, 128
H. Zhong, Janet Painter, Patrice Salomé, M. Straume, C. McClung (1998)
Imbibition, but Not Release from Stratification, Sets the Circadian Clock in Arabidopsis SeedlingsPlant Cell, 10
Jing Wang, K. Coombes, W. Highsmith, M. Keating, L. Abruzzo (2004)
Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studiesBioinformatics, 20 17
P. Quail (2002)
Photosensory perception and signalling in plant cells: new paradigms?Current opinion in cell biology, 14 2
J. Shanklin, M. Jabben, R. Vierstra (1987)
Red light-induced formation of ubiquitin-phytochrome conjugates: Identification of possible intermediates of phytochrome degradation.Proceedings of the National Academy of Sciences of the United States of America, 84 2
N. Dharmasiri, S. Dharmasiri, M. Estelle (2005)
The F-box protein TIR1 is an auxin receptorNature, 435
A. Rashotte, S. Carson, Jennifer To, J. Kieber (2003)
Expression Profiling of Cytokinin Action in Arabidopsis1[w]Plant Physiology, 132
L. Tang, S. Bhat, M.E. Petracek (2003)
Light control of nuclear gene mRNA abundance in tobaccoPlant Physiol, 133
Ligeng Ma, Ying Gao, Li-jia Qu, Zhang-liang Chen, Jinming Li, Hongyu Zhao, X. Deng (2002)
Genomic Evidence for COP1 as a Repressor of Light-Regulated Gene Expression and Development in Arabidopsis Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004416.The Plant Cell Online, 14
O. Oswald, T. Martin, P. Dominy, I. Graham (2001)
Plastid redox state and sugars: interactive regulators of nuclear-encoded photosynthetic gene expression.Proceedings of the National Academy of Sciences of the United States of America, 98 4
M. Meinhard, P. Rodriguez, E. Grill (2002)
The sensitivity of ABI2 to hydrogen peroxide links the abscisic acid-response regulator to redox signallingPlanta, 214
(2004)
Gibberellins repress photomorphogenesis in darkness
A. Nagatani (2004)
Light-regulated nuclear localization of phytochromes.Current opinion in plant biology, 7 6
Margaret Ahmad, J. Jarillo, A. Cashmore (1998)
Chimeric Proteins between cry1 and cry2 Arabidopsis Blue Light Photoreceptors Indicate Overlapping Functions and Varying Protein StabilityPlant Cell, 10
R. Swarup, Geraint Parry, N. Graham, Trudie Allen, M. Bennett (2004)
Auxin cross-talk: integration of signalling pathways to control plant developmentPlant Molecular Biology, 49
Philip Zimmermann, Matthias Hirsch-Hoffmann, L. Hennig, W. Gruissem (2004)
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w]Plant Physiology, 136
Chunling Yi, X. Deng (2005)
COP1 - from plant photomorphogenesis to mammalian tumorigenesis.Trends in cell biology, 15 11
Despite intense research on light responses in plants, the consequences of a simple shift from light to darkness remain poorly characterized. We have examined the transcriptome of Arabidopsis thaliana seedling leaves upon a shift from constant light to darkness for between 1 and 8 h, while excluding most effects associated with circadian oscillation. Expression clustering and gene ontology analyses identified about 790 responsive genes implicated in diverse cellular processes. Compared to the better-studied long-term dark adaptation response, the early response to darkness is partially overlapping yet clearly distinct, encompassing early transient, early sustained, and late response clusters. The repressor of photomorphogenesis, COP1 (constitutive photomorphogenic 1), is not a chief regulator of the early response to darkness, in contrast to its well-established role during long-term dark adaptation and etiolation. Only part of the early dark response can be understood as the opposite of the response following a dark-to-light transition and as a response to sugar deprivation. Bioinformatic comparisons with published microarray datasets further suggest that abscisic acid (ABA) signaling plays a prominent role in the early response to darkness, although this effect is not mediated by an increase in the ABA level. The potential basis for the co-regulation by darkness and ABA is discussed in light of sugar and redox signaling.
Plant Molecular Biology – Springer Journals
Published: Oct 19, 2005
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.