The complete chloroplast genome of Cupressus chengiana

The complete chloroplast genome of Cupressus chengiana The whole chloroplast (cp) genome sequence of Cupressus chengiana has been characterized from Illumina pair-end sequencing. The circular genome is 128,151 bp in length with 115 single copy genes and two duplicated genes (trnl-CAU, trnQ-UUG). This genome contains 82 protein-coding genes, 31 tRNA genes and four ribosomal RNA genes (four rRNA species). In these genes, eight genes (atpF, ndhA, ndhB, rpoC1, petD, petB, rpl16 and rpl2) harbor a single intron and two genes (rps12 and ycf3) harbor two introns. This cp genome does not contain canonical IRs, and the overall GC content is 34.7%. Further, phylogenetic analysis suggested that C. chengiana is closely related to the species of C. gigantea. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Conservation Genetics Resources Springer Journals

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Publisher
Springer Netherlands
Copyright
Copyright © 2017 by Springer Science+Business Media Dordrecht
Subject
Life Sciences; Conservation Biology/Ecology; Ecology; Biodiversity; Evolutionary Biology; Plant Genetics and Genomics; Animal Genetics and Genomics
eISSN
1877-7260
D.O.I.
10.1007/s12686-016-0675-z
Publisher site
See Article on Publisher Site

Abstract

The whole chloroplast (cp) genome sequence of Cupressus chengiana has been characterized from Illumina pair-end sequencing. The circular genome is 128,151 bp in length with 115 single copy genes and two duplicated genes (trnl-CAU, trnQ-UUG). This genome contains 82 protein-coding genes, 31 tRNA genes and four ribosomal RNA genes (four rRNA species). In these genes, eight genes (atpF, ndhA, ndhB, rpoC1, petD, petB, rpl16 and rpl2) harbor a single intron and two genes (rps12 and ycf3) harbor two introns. This cp genome does not contain canonical IRs, and the overall GC content is 34.7%. Further, phylogenetic analysis suggested that C. chengiana is closely related to the species of C. gigantea.

Journal

Conservation Genetics ResourcesSpringer Journals

Published: Jan 6, 2017

References

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