The complete chloroplast genome of a vulnerable species Champereia manillana (Opiliaceae)

The complete chloroplast genome of a vulnerable species Champereia manillana (Opiliaceae) Champereia manillana (Bl.) Merr. is a vulnerable plant from the family Opiliaceae. The complete chloroplast genome (plastome) of Opiliaceae family was sequenced for the first time. The plastome of C. manillana was 147,461 bp in length. It was consisted of a large single copy (LSC) region (83,505 bp) and a small single copy (SSC) region (7,806 bp), which were separated by two inverted repeats (IRs, 28,075 bp). This plastome contained 101 different genes, including 67 protein-coding genes (PCGs), 30 tRNA genes and four rRNA genes. The overall GC content was 37.4%. Furthermore, phylogenetics analysis of 4 species in the Santalales was also conducted. The whole chloroplast genome of this species will be useful for the future plant evolutionary, phylogeny and genomic studies in the family Opiliaceae. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Conservation Genetics Resources Springer Journals

The complete chloroplast genome of a vulnerable species Champereia manillana (Opiliaceae)

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Publisher
Springer Netherlands
Copyright
Copyright © 2017 by Springer Science+Business Media Dordrecht
Subject
Life Sciences; Conservation Biology/Ecology; Ecology; Biodiversity; Evolutionary Biology; Plant Genetics and Genomics; Animal Genetics and Genomics
eISSN
1877-7260
D.O.I.
10.1007/s12686-017-0697-1
Publisher site
See Article on Publisher Site

Abstract

Champereia manillana (Bl.) Merr. is a vulnerable plant from the family Opiliaceae. The complete chloroplast genome (plastome) of Opiliaceae family was sequenced for the first time. The plastome of C. manillana was 147,461 bp in length. It was consisted of a large single copy (LSC) region (83,505 bp) and a small single copy (SSC) region (7,806 bp), which were separated by two inverted repeats (IRs, 28,075 bp). This plastome contained 101 different genes, including 67 protein-coding genes (PCGs), 30 tRNA genes and four rRNA genes. The overall GC content was 37.4%. Furthermore, phylogenetics analysis of 4 species in the Santalales was also conducted. The whole chloroplast genome of this species will be useful for the future plant evolutionary, phylogeny and genomic studies in the family Opiliaceae.

Journal

Conservation Genetics ResourcesSpringer Journals

Published: Feb 14, 2017

References

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