Access the full text.
Sign up today, get DeepDyve free for 14 days.
SE Smith, FA Smith (2011)
Roles of arbuscular mycorrhizas in plant nutrition and growth: new paradigms from cellular to ecosystem scalesAnnu Rev Plant Biol, 62
Y Wang, ZS Wang, L Amyot, LN Tian, ZQ Xu, MY Gruber, A Hannoufa (2015)
Ectopic expression of miR156 represses nodulation and causes morphological and developmental changes in Lotus japonicusMol Gen Genomics, 290
W Filipowicz, SN Bhattacharyya, N Sonenberg (2008)
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?Nat Rev Genet, 9
A Branscheid, D Sieh, BD Pant, P May, EA Devers, A Elkrog, L Schauser, WR Scheible, F Krajinski (2010)
Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosisMol Plant-Microbe Interact, 23
M Turner, NR Nizampatnam, M Baron, S Coppin, S Damodaran, S Adhikari, SP Arunachalam, O Yu, S Subramanian (2013)
Ectopic expression of miR160 results in auxin hypersensitivity, cytokinin hyposensitivity, and inhibition of symbiotic nodule development in soybeanPlant Physiol, 162
N Takeda, S Sato, E Asamizu, S Tabata, M Parniske (2009)
Apoplastic plant subtilases support arbuscular mycorrhiza development in Lotus japonicusPlant J, 58
XB Dai, PX Zhao (2011)
psRNATarget: a plant small RNA target analysis serverNucleic Acids Res, 39
N Pumplin, MJ Harrison (2009)
Live-cell imaging reveals periarbuscular membrane domains and organelle location in Medicago truncatula roots during arbuscular mycorrhizal symbiosisPlant Physiol, 151
C Chen, DA Ridzon, AJ Broomer, Z Zhou, DH Lee, JT Nguyen, M Barbisin, NL Xu, VR Mahuvakar, MR Andersen, KQ Lao, KJ Livak, KJ Guegler (2005)
Real-time quantification of microRNAs by stem-loop RT-PCRNucleic Acids Res, 33
T Peng, Q Lv, J Zhang, JZ Li, YX Du, QZ Zhao (2011)
Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)J Exp Bot, 62
JM Couzigou, D Lauressergues, O Andre, C Gutjahr, B Guillotin, G Becard, JP Combier (2017)
Positive gene regulation by a natural protective miRNA enables arbuscular mycorrhizal symbiosisCell Host Microbe, 21
A Boualem, P Laporte, M Jovanovic, C Laffont, J Plet, JP Combier, A Niebel, M Crespi, F Frugier (2008)
MicroRNA166 controls root and nodule development in Medicago truncatulaPlant J, 54
V Hofferek, A Mendrinna, N Gaude, F Krajinski, EA Devers (2014)
MiR171h restricts root symbioses and shows like its target NSP2 a complex transcriptional regulation in Medicago truncatulaBMC Plant Biol, 14
C Camacho, G Coulouris, V Avagyan, N Ma, J Papadopoulos, K Bealer, TL Madden (2009)
BLAST plus: architecture and applicationsBMC Bioinformatics, 10
M Govindarajulu, PE Pfeffer, HR Jin, J Abubaker, DD Douds, JW Allen, H Bucking, PJ Lammers, Y Shachar-Hill (2005)
Nitrogen transfer in the arbuscular mycorrhizal symbiosisNature, 435
YN Wang, KX Li, L Chen, YM Zou, HP Liu, YP Tian, DX Li, R Wang, F Zhao, BJ Ferguson, PM Gresshoff, X Li (2015)
MicroRNA167-directed regulation of the auxin response factors GmARF8a and GmARF8b is required for soybean nodulation and lateral root developmentPlant Physiol, 168
X Yin, J Wang, H Cheng, X Wang, D Yu (2013)
Detection and evolutionary analysis of soybean miRNAs responsive to soybean mosaic virusPlanta, 237
M Zuker (2003)
Mfold web server for nucleic acid folding and hybridization predictionNucleic Acids Res, 31
M Lohse, A Nagel, T Herter, P May, M Schroda, R Zrenner, T Tohge, AR Fernie, M Stitt, B Usadel (2014)
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence dataPlant Cell Environ, 37
M Etemadi, C Gutjahr, JM Couzigou, M Zouine, D Lauressergues, A Timmers, C Audran, M Bouzayen, G Becard, JP Combier (2014)
Auxin perception is required for arbuscule development in arbuscular mycorrhizal symbiosisPlant Physiol, 166
Y Cao, MK Halane, W Gassmann, G Stacey (2017)
The role of plant innate immunity in the legume-rhizobium symbiosisAnnu Rev Plant Biol, 68
QS Wu, RX Xia (2006)
Arbuscular mycorrhizal fungi influence growth, osmotic adjustment and photosynthesis of citrus under well-watered and water stress conditionsJ Plant Physiol, 163
C Gutjahr, M Parniske (2013)
Cell and developmental biology of arbuscular mycorrhiza symbiosisAnnu Rev Cell Dev Biol, 29
GED Oldroyd (2013)
Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plantsNat Rev Microbiol, 11
M Zhou, L Gu, P Li, X Song, L Wei, Z Chen, X Cao (2010)
Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)Front Biol, 5
IA Sparkes, J Runions, A Kearns, C Hawes (2006)
Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plantsNat Protoc, 1
YL Liu, L Wang, DJ Chen, XM Wu, D Huang, LL Chen, L Li, XX Deng, Q Xu (2014)
Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orangeBMC Genomics, 15
A Bravo, T York, N Pumplin, LA Mueller, MJ Harrison (2016)
Genes conserved for arbuscular mycorrhizal symbiosis identified through phylogenomicsNat Plants, 2
L Xue, HT Cui, B Buer, V Vijayakumar, PM Delaux, S Junkermann, M Bucher (2015)
Network of GRAS transcription factors involved in the control of arbuscule development in Lotus japonicusPlant Physiol, 167
BC Meyers, MJ Axtell, B Bartel, DP Bartel, D Baulcombe, JL Bowman, X Cao, JC Carrington, X Chen, PJ Green, S Griffiths-Jones, SE Jacobsen, AC Mallory, RA Martienssen, RS Poethig, Y Qi, H Vaucheret, O Voinnet, Y Watanabe, D Weigel, JK Zhu (2008)
Criteria for annotation of plant MicroRNAsPlant Cell, 20
MJ Harrison, GR Dewbre, JY Liu (2002)
A phosphate transporter from Medicago truncatula involved in the acquisiton of phosphate released by arbuscular mycorrhizal fungiPlant Cell, 14
C Gutjahr, M Banba, V Croset, K An, A Miyao, G An, H Hirochika, H Imaizumi-Anraku, U Paszkowski (2008)
Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathwayPlant Cell, 20
LI Shukla, V Chinnusamy, R Sunkar (2008)
The role of microRNAs and other endogenous small RNAs in plant stress responsesBba-Gene Regul Mech, 1779
C Song, C Wang, C Zhang, NK Korir, H Yu, Z Ma, J Fang (2010)
Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)BMC Genomics, 11
JP Combier, F Frugier, F Billy, A Boualem, F El-Yahyaoui, S Moreau, T Vernie, T Ott, P Gamas, M Crespi, A Niebel (2006)
MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatulaGenes Dev, 20
YQ Ding, XQ Zhou, L Zuo, H Wang, DY Yu (2016)
Identification and functional characterization of the sulfate transporter gene GmSULTR1;2b in soybeanBMC Genomics, 17
D Lauressergues, PM Delaux, D Formey, C Lelandais-Briere, S Fort, S Cottaz, G Becard, A Niebel, C Roux, JP Combier (2012)
The microRNA miR171h modulates arbuscular mycorrhizal colonization of Medicago truncatula by targeting NSP2Plant J, 72
EA Devers, A Branscheid, P May, F Krajinski (2011)
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosisPlant Physiol, 156
Q Yao, LR Wang, HH Zhu, JZ Chen (2009)
Effect of arbuscular mycorrhizal fungal inoculation on root system architecture of trifoliate orange (Poncirus trifoliata L. Raf.) seedlingsSci Hortic, 121
E Allen, ZX Xie, AI Gustafson, JC Carrington (2007)
microRNA-directed phasing during trans-acting siRNA biogenesis in plantsCell, 131
JZ Zhang, XY Ai, WW Guo, SA Peng, XX Deng, CG Hu (2012)
Identification of miRNAs and their target genes using deep sequencing and degradome analysis in trifoliate orange [Poncirus trifoliata L. Raf]Mol Biotechnol, 51
H Li, Y Deng, TL Wu, S Subramanian, O Yu (2010)
Misexpression of miR482, miR1512, and miR1515 increases soybean nodulationPlant Physiol, 153
MA German, M Pillay, DH Jeong, A Hetawal, SJ Luo, P Janardhanan, V Kannan, LA Rymarquis, K Nobuta, R German, E Paoli, C Lu, G Schroth, BC Meyers, PJ Green (2008)
Global identification of microRNA-target RNA pairs by parallel analysis of RNA endsNat Biotechnol, 26
S Ivashuta, J Liu, J Liu, DP Lohar, S Haridas, B Bucciarelli, KA VandenBosch, CP Vance, MJ Harrison, JS Gantt (2005)
RNA interference identifies a calcium-dependent protein kinase involved in Medicago truncatula root developmentPlant Cell, 17
J Bazin, GA Khan, JP Combier, P Bustos-Sanmamed, JM Debernardi, R Rodriguez, C Sorin, J Palatnik, C Hartmann, M Crespi, C Lelandais-Briere (2013)
miR396 affects mycorrhization and root meristem activity in the legume Medicago truncatulaPlant J, 74
SC Liu, YX Xu, JQ Ma, WW Wang, W Chen, DJ Huang, J Fang, XJ Li, L Chen (2016)
Small RNA and degradome profiling reveals important roles for microRNAs and their targets in tea plant response to drought stressPhysiol Plant, 158
YN Wang, LX Wang, YM Zou, L Chen, ZM Cai, SL Zhang, F Zhao, YP Tian, Q Jiang, BJ Ferguson, PM Gresshoff, X Li (2014)
Soybean miR172c targets the repressive AP2 transcription factor NNC1 to activate ENOD40 expression and regulate nodule initiationPlant Cell, 26
MW Jones-Rhoades, DP Bartel, B Bartel (2006)
MicroRNAs and their regulatory roles in plantsAnnu Rev Plant Biol, 57
U Paszkowski, S Kroken, C Roux, SP Briggs (2002)
Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosisProc Natl Acad Sci U S A, 99
XN Zhang, X Li, JH Liu (2014)
Identification of conserved and novel cold-responsive microRNAs in trifoliate orange (Poncirus trifoliata (L.) Raf.) using high-throughput sequencingPlant Mol Biol Report, 32
S Calabrese, A Kohler, A Niehl, C Veneault-Fourrey, T Boller, PE Courty (2017)
Transcriptome analysis of the Populus trichocarpa-Rhizophagus irregularis mycorrhizal symbiosis: regulation of plant and fungal transportomes under nitrogen starvationPlant Cell Physiol, 58
G Szittya, S Moxon, DM Santos, R Jing, MPS Fevereiro, V Moulton, T Dalmay (2008)
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA familiesBMC Genomics, 9
Arbuscular mycorrhizal fungi (AMF) form mutualistic symbiosis with most land plants, providing mineral nutrients to plants in exchange for photosynthates. Citrus trees have sparse root hairs and thus heavily rely on AMF for nutrient uptake. Although the mechanism underlying AM symbiosis (AMS) is well understood at transcriptional level, little is known about the post-transcriptional regulation of AMS, especially in woody plants. In this study, we performed a comprehensive identification of microRNAs (miRNAs) involved in AMS through Illumina sequencing in a commonly used citrus rootstock, Poncirus trifoliata L. Raf. A total of 148 known miRNAs and 15 novel miRNAs were identified in the roots, among which 20 miRNAs and miRNA*s (microRNA stars) were differentially expressed in response to mycorrhizal colonization, indicating a potential role of these miRNAs and miRNA*s in mycorrhizal symbiosis. Notably, two miRNAs previously reported as responsive to AMS in medicago and tomato (miR171b and miR167h) were also detected to be differentially expressed in mycorrhizal roots of Poncirus trifoliata L. Raf. In addition, our study identified a set of miRNAs (miR399g, miR473, miR1446b/c, and miR477a/c) that could target AMS-related genes, including those encoding SbtM (subtilisin-like serine protease), RAD1 (required for arbuscule development 1), and RFC (replication factor C). Taken together, this study reveals a potential conservation of miRNA-mediated post-transcriptional regulation of AMS between woody plant and herbaceous model plants and also provides some new miRNAs for understanding the regulatory mechanism of AMS in poncirus.
Tree Genetics & Genomes – Springer Journals
Published: May 26, 2018
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.