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María Gómez-Lobato, J. Hasperué, P. Civello, A. Chaves, G. Martínez (2012)
Effect of 1-MCP on the expression of chlorophyll degrading genes during senescence of broccoli (Brassica oleracea L.)Scientia Horticulturae, 144
Horim Lee, S. Suh, Eunsook Park, E. Cho, J. Ahn, Sang-Gu Kim, Jong Lee, Y. Kwon, I. Lee (2000)
The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis.Genes & development, 14 18
JG Bergsma, C Li, K Lesniewska, K Sivasithamparam, H Yang (2008)
Identification of quantitative trait loci (QTLs) influencing early vigour, height, flowering date, and seed size and their implications for breeding of narrow-leafed lupin (Lupinus angustifolius L.)Aust J Agric, 59
D. Kosambi (1943)
The estimation of map distances from recombination values.Annals of Human Genetics, 12
A. Abe, S. Kosugi, Kentaro Yoshida, S. Natsume, H. Takagi, H. Kanzaki, H. Matsumura, K. Yoshida, Chikako Mitsuoka, Muluneh Tamiru, H. Innan, L. Cano, S. Kamoun, R. Terauchi (2012)
Genome sequencing reveals agronomically important loci in rice using MutMapNature Biotechnology, 30
J. Shu, Yumei Liu, Zhansheng Li, Lili Zhang, Z. Fang, Limei Yang, M. Zhuang, Yang-yong Zhang, H. Lv (2015)
Organelle Simple Sequence Repeat Markers Help to Distinguish Carpelloid Stamen and Normal Cytoplasmic Male Sterile Sources in BroccoliPLoS ONE, 10
J. Moon, S. Suh, Horim Lee, Kyuha Choi, C. Hong, N. Paek, Sang-Gu Kim, Ilha Lee (2003)
The SOC1 MADS-box gene integrates vernalization and gibberellin signals for flowering in Arabidopsis.The Plant journal : for cell and molecular biology, 35 5
(2014)
Structural features determining flowerpromoting activity of Arabidopsis FLOWERING LOCUS T
P. Wigge, M. Kim, Katja Jaeger, Wolfgang Busch, M. Schmid, J. Lohmann, D. Weigel (2005)
Integration of Spatial and Temporal Information During Floral Induction in ArabidopsisScience, 309
J. Finley (2003)
The antioxidant responsive element (ARE) may explain the protective effects of cruciferous vegetables on cancer.Nutrition reviews, 61 7
P. Suárez-López, Kay Wheatley, F. Robson, H. Onouchi, F. Valverde, G. Coupland (2001)
CONSTANS mediates between the circadian clock and the control of flowering in ArabidopsisNature, 410
Xu Xiao-wan, Li Ying (2012)
Major Gene Plus Poly-gene Inheritance Analysis of the Flowing Time in Pepper(Capsicum annuum.L)
Hongfeng Lu, Tao Lin, Joël Klein, Shenhao Wang, Jianjian Qi, Qian Zhou, Jinjing Sun, Zhonghua Zhang, Y. Weng, Sanwen Huang (2014)
QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumberTheoretical and Applied Genetics, 127
H. Takagi, A. Abe, Kentaroh Yoshida, S. Kosugi, S. Natsume, Chikako Mitsuoka, Aiko Uemura, Hiroe Utsushi, Muluneh Tamiru, Shohei Takuno, H. Innan, L. Cano, S. Kamoun, R. Terauchi (2013)
QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.The Plant journal : for cell and molecular biology, 74 1
J. Ooijen, J. Ooijen, JW Verlaat, J. Ooijen, J. Tol, J. Dalén, J. Buren, J. Meer, J. Krieken, J. Ooijen, J. Kessel, Ooijen Van, R. Voorrips, L. Heuvel (2006)
JoinMap® 4, Software for the calculation of genetic linkage maps in experimental populations
C. Sheldon, D. Rouse, E. Finnegan, W. Peacock, E. Dennis (2000)
The molecular basis of vernalization: the central role of FLOWERING LOCUS C (FLC).Proceedings of the National Academy of Sciences of the United States of America, 97 7
W. Ye (2012)
Mapping QTLs for Seedling-associated Traits in Cucumber
M. Maheswaran, N. Huang, S. Sreerangasamy, S. McCouch (2000)
Mapping quantitative trait loci associated with days to flowering and photoperiod sensitivity in rice (Oryza sativa L.)Molecular Breeding, 6
C. Qingjun, Zhang Haiying, W. Yongjian, Liu Wanyu, Zhang Feng, Ma Aijun, Cheng Jihong, Chen Mingyuan (2010)
Mapping and analyzing QTLs of yield-associated agronomic traits of greenhouse cucumbers., 43
Chang Liu, Hongyan Chen, H. Er, H. Soo, Prakash Kumar, Jin-Hua Han, Y. Liou, Hao Yu (2008)
Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis, 135
Yasushi Kobayashi, H. Kaya, K. Goto, M. Iwabuchi, T. Araki (1999)
A pair of related genes with antagonistic roles in mediating flowering signals.Science, 286 5446
M. Murray, W. Thompson (1980)
Rapid isolation of high molecular weight plant DNA.Nucleic acids research, 8 19
K. Taoka, I. Ohki, H. Tsuji, Kyoko Furuita, Kokoro Hayashi, Tomoko Yanase, Midori Yamaguchi, Chikage Nakashima, Y. Purwestri, Shojiro Tamaki, Yuka Ogaki, Chihiro Shimada, A. Nakagawa, C. Kojima, K. Shimamoto (2011)
14-3-3 proteins act as intracellular receptors for rice Hd3a florigenNature, 476
Sheng Liu, Yumei Liu, Xinhua Yang, Chaobo Tong, D. Edwards, I. Parkin, Meixia Zhao, Jianxin Ma, Jingyin Yu, Shunmou Huang, Xiyin Wang, Junyi Wang, Kun Lu, Z. Fang, I. Bancroft, Tae-Jin Yang, Q. Hu, Xinfa Wang, Zhen Yue, Haojie Li, Linfeng Yang, Jian Wu, Qing Zhou, Wan-lei Wang, G. King, J. Pires, Changxin Lu, Zhangyan Wu, P. Sampath, Zhuo Wang, Hui Guo, S. Pan, Limei Yang, Jiumeng Min, Dong Zhang, Dianchuan Jin, Wanshun Li, H. Belcram, J. Tu, M. Guan, Cunkou Qi, D. Du, Jiana Li, Liangcai Jiang, J. Batley, A. Sharpe, Beom-Seok Park, Pradeep Ruperao, Feng Cheng, N. Waminal, Yin Huang, C. Dong, Li Wang, Jingping Li, Zhiyong Hu, M. Zhuang, Yi Huang, Jun-yan Huang, Jiaqin Shi, D. Mei, Jing Liu, Tae-Ho Lee, Jinpeng Wang, Huizhe Jin, Zai-yun Li, Xun Li, Jiefu Zhang, Lu Xiao, Yongming Zhou, Zhongsong Liu, Xuequn Liu, R. Qin, Xu Tang, Wenbin Liu, Yupeng Wang, Yang-yong Zhang, Jonghoon Lee, Hyun Kim, F. Denoeud, Xun Xu, Xinming Liang, Wei Hua, Xiaowu Wang, Jun Wang, B. Chalhoub, A. Paterson (2014)
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomesNature Communications, 5
J. Ooien, M. Boer, R. Jansen, C. Maliepaard (2000)
MapQTL 4.0: Software For The Calculation Of QTL Positions On Genetic Maps
Chengxia Li, Huiqiong Lin, J. Dubcovsky (2015)
Factorial combinations of protein interactions generate a multiplicity of florigen activation complexes in wheat and barley.The Plant journal : for cell and molecular biology, 84 1
P. Lindhout, S. Heusden, G. Pet, J. Ooijen, H. Sandbrink, R. Verkerk, R. Vrielink, P. Zabel (2004)
Perspectives of molecular marker assisted breeding for earliness in tomatoEuphytica, 79
Jae-Hoon Jung, Yun Ju, P. Seo, Jae-Hyung Lee, Chung-Mo Park (2012)
The SOC1-SPL module integrates photoperiod and gibberellic acid signals to control flowering time in Arabidopsis.The Plant journal : for cell and molecular biology, 69 4
Ruiqiang Li, Chang Yu, Yingrui Li, T. Lam, S. Yiu, K. Kristiansen, Jun Wang (2009)
SOAP2: an improved ultrafast tool for short read alignmentBioinformatics, 25 15
K. Livak, Thomas Schmittgen (2001)
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.Methods, 25 4
L Pnueli, T Gutfinger, D Hareven, O Ben-Naim, N Ron, N Adir, E Lifschitz (2001)
Tomato SP-interacting proteins define a conserved signaling system that regulates shoot architecture and floweringPlant Cell, 13
J. Jamalabadi, A. Saidi, E. Karami, Mehrab Kharkesh, R. Talebi (2013)
Molecular Mapping and Characterization of Genes Governing Time to Flowering, Seed Weight, and Plant Height in an Intraspecific Genetic Linkage Map of Chickpea (Cicer arietinum)Biochemical Genetics, 51
J. Boersma, Chengdao Li, K. Leśniewska, K. Sivasithamparam, Huaan Yang (2008)
Identification of quantitative trait loci (QTLs) influencing early vigour, height, flowering date, and seed size and their implications for breeding of narrow-leafed lupin (Lupinus angustifolius L.)Crop & Pasture Science, 59
Jean Choi, Youbong Hyun, Min‐Jeong Kang, Hye Yun, Jae-Young Yun, C. Lister, C. Dean, R. Amasino, B. Noh, Y. Noh, Yeonhee Choi (2009)
Resetting and regulation of Flowering Locus C expression during Arabidopsis reproductive development.The Plant journal : for cell and molecular biology, 57 5
Yin Dong-mei (2011)
Heterosis and mixed genetic analysis for florescence-related traits of chrysanthemumJournal of Nanjing Agricultural University
J. Putterill, Rebecca Laurie, R. Macknight (2004)
It's time to flower: the genetic control of flowering timeBioEssays, 26
Jia-Wei Wang, Benjamin Czech, D. Weigel (2009)
miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thalianaCell, 138
L. Pnueli, T. Gutfinger, D. Hareven, Orna Ben-Naim, Neta Ron, N. Adir, E. Lifschitz (2001)
Tomato SP-Interacting Proteins Define a Conserved Signaling System That Regulates Shoot Architecture and Flowering Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010293.The Plant Cell Online, 13
Jia Xiaohong, Z. Lei, Lu Xixi, Liu Yating, Wang Yugang, F. Hui (2013)
Inheritance analysis of bolting associated traits using mixed major gene plus polygene model in Brassica rapa.
F. Fornara, Amaury Montaigu, G. Coupland (2010)
SnapShot: Control of Flowering in ArabidopsisCell, 141
Food and Rural Affairs (DEFRA) (2010) Basic horticultural statistics for the United Kingdom
DD Kosambi (1944)
The estimation of map distances from recombination valuesAnn Eugen, 12
(2015)
Effect of different pruning methods on flowering and fruiting characteristics between different types of male sterile lines in broccoli seed plants
Mitsutomo Abe, Yasushi Kobayashi, Sumiko Yamamoto, Yasufumi Daimon, A. Yamaguchi, Yoko Ikeda, H. Ichinoki, M. Notaguchi, K. Goto, T. Araki (2005)
FD, a bZIP Protein Mediating Signals from the Floral Pathway Integrator FT at the Shoot ApexScience, 309
Shu Jin-shua (2014)
Study on the Floral Characteristics and Structure in Two Types of Male Sterile Lines of Broccoli( Brassica oleracea var. italica)Journal of Plant Genetic Resources
N. Kawamoto, Motomu Endo, T. Araki (2015)
Expression of a kinase-dead form of CPK33 involved in florigen complex formation causes delayed floweringPlant Signaling & Behavior, 10
Gennaro Fazio, Gennaro Fazio, Jack Staub, M. Stevens (2003)
Genetic mapping and QTL analysis of horticultural traits in cucumber (Cucumis sativus L.) using recombinant inbred linesTheoretical and Applied Genetics, 107
G. Zou, Guowei Zhai, Qi Feng, Song Yan, Ahong Wang, Qiang Zhao, Jianfeng Shao, Zhipeng Zhang, J. Zou, B. Han, Y. Tao (2012)
Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods.Journal of experimental botany, 63 15
K. Taoka, I. Ohki, H. Tsuji, C. Kojima, K. Shimamoto (2013)
Structure and function of florigen and the receptor complex.Trends in plant science, 18 5
Jungeun Lee, Mijin Oh, Hanna Park, Ilha Lee (2008)
SOC1 translocated to the nucleus by interaction with AGL24 directly regulates leafy.The Plant journal : for cell and molecular biology, 55 5
PG Walley, J Carder, E Skipper, E Mathas, J Lynn, D Pink, V Buchanan-Wollaston (2012)
A new broccoli × broccoli immortal mapping population and framework genetic map: tools for breeders and complex trait analysisTheor Appl Genet, 124
O. Panaud, X. Chen, S. McCouch (1996)
Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.)Molecular and General Genetics MGG, 252
Zhengrui Qin, Jiajie Wu, Shuaifeng Geng, Nan Feng, Fengjuan Chen, Xingchen Kong, Gaoyuan Song, Kai Chen, Aili Li, Long Mao, Liang Wu (2017)
Regulation of FT splicing by an endogenous cue in temperate grassesNature Communications, 8
I. Kardailsky, V. Shukla, J. Ahn, Nicole Dagenais, Sioux Christensen, Jasmine Nguyen, J. Chory, M. Harrison, D. Weigel (1999)
Activation tagging of the floral inducer FT.Science, 286 5446
P. Walley, J. Carder, E. Skipper, E. Mathas, J. Lynn, D. Pink, V. Buchanan-Wollaston (2011)
A new broccoli × broccoli immortal mapping population and framework genetic map: tools for breeders and complex trait analysisTAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik, 124
Jason O'Rawe, Jason O'Rawe, T. Jiang, Guangqing Sun, Yiyang Wu, Yiyang Wu, Wei Wang, Jingchu Hu, P. Bodily, Lifeng Tian, H. Hakonarson, W. Johnson, Zhi Wei, Kai Wang, Kai Wang, G. Lyon, G. Lyon, G. Lyon (2013)
Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencingGenome Medicine, 5
Jeong Lee, Seong Yoo, S. Park, Ildoo Hwang, Jong Lee, J. Ahn (2007)
Role of SVP in the control of flowering time by ambient temperature in Arabidopsis.Genes & development, 21 4
S. Michaels, R. Amasino (2001)
Loss of FLOWERING LOCUS C Activity Eliminates the Late-Flowering Phenotype of FRIGIDA and Autonomous Pathway Mutations but Not Responsiveness to VernalizationPlant Cell, 13
Key message A major QTL controlling early flowering in broccoli × cabbage was identified by marker analysis and next-generation sequencing, corresponding to GRF6 gene conditioning flowering time in Arabidopsis. Abstract Flowering is an important agronomic trait for hybrid production in broccoli and cabbage, but the genetic mechanism underlying this process is unknown. In this study, segregation analysis with BC P1, BCP2, F , and F populations derived 1 1 2 2:3 from a cross between two inbred lines “195” (late-flowering) and “93219” (early flowering) suggested that flowering time is a quantitative trait. Next, employing a next-generation sequencing-based whole-genome QTL-seq strategy, we identified a major genomic region harboring a robust flowering time QTL using an F mapping population, designated Ef2.1 on cabbage chromosome 2 for early flowering. Ef2.1 was further validated by indel (insertion or deletion) marker-based classical QTL mapping, explaining 51.5% (LOD = 37.67) and 54.0% (LOD = 40.5) of the phenotypic variation in F and F populations, 2 2:3 respectively. Combined QTL-seq and classical QTL analysis narrowed down Ef1.1 to a 228-kb genomic region containing 29 genes. A cabbage gene, Bol024659, was identified in this region, which is a homolog of GRF6, a major gene regulating flowering in Arabidopsis, and was designated BolGRF6. qRT-PCR
TAG Theoretical and Applied Genetics – Springer Journals
Published: Jan 5, 2018
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