Mammalian Genome 9, 1072–1074 (1998). Incorporating Mouse Genome © Springer-Verlag New York Inc. 1998 Putative assignment of ESTs to the genetic map by use of the SSLP database Bruce J. Herron, George H. Silva, Lorraine Flaherty Molecular Genetics Program and Laboratory of Developmental Genetics, Wadsworth Center, 120 New Scotland Avenue, PO Box 22002, Albany, NY 12201-2002, USA, and the Department of Biomedical Sciences, State University of New York at Albany, Albany, NY 12201, USA Received: 2 June 1998 / Accepted: 20 August 1998 Simple sequence length polymorphisms (SSLPs) have generally In searching for matches, an e value of 10 and a nucleotide been found by examining length differences in short tandem repeat minimum match length (word size) of 11 were used. The e value sequences, such as dinucleotide repeats (Tautz 1989). These repeat equals the expected frequency of a chance occurrence and is de- sequences are widely distributed throughout many mammalian ge- scribed in detail in the BLAST manual (http://www2.ncbi. nomes and can vary greatly in length, making them ideal sources nlm.nih.gov/blast help.html). of genetic diversity. In addition, their small size makes them ame- Results were then evaluated for all matches with a sum prob- nable to polymerase chain
Mammalian Genome – Springer Journals
Published: Dec 1, 1998
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