Access the full text.
Sign up today, get DeepDyve free for 14 days.
NMF Auler, MS Reis, MP Guerra, RO Nodari (2002)
The genetics and conservation of Araucaria angustifolia: I. Genetic structure and diversity of natural populations by means of non-adaptive variation in the state of Santa Catarina, BrazilGenet Mol Biol, 25
CA Peres, C Baider (1997)
Seed dispersal, spatial distribution and population structure of Brazilnut trees ( Bertholletia excelsa) in southeastern AmazoniaJ Trop Ecol, 13
MP Quiroga, S Pacheco, LR Malizia, AC Premoli (2012)
Shrinking forests under warming: evidence of Podocarpus parlatorei (pino del cerro) from the subtropical AndesJ Hered, 103
MIF Souza de (2009)
546Genet Mol Biol, 32
Y-Z Cun (2015)
315J Biogeogr, 42
JC Avise (1987)
489Annu Rev Ecol Syst, 18
L Excoffier (1992)
479Genetics, 131
JVM Bittencourt, AM Sebbenn (2007)
Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern BrazilHeredity (Edinb), 99
L Meng, G Chen, Z Li, Y Yang, Z Wang, L Wang (2015)
Refugial isolation and range expansions drive the genetic structure of Oxyria sinensis (Polygonaceae) in the Himalaya-Hengduan MountainsSci Rep, 5
H Behling, SG Bauermann, PCP Neves (2001)
Holocene environmental changes in the São Francisco de Paula region, southern BrazilJ S Am Earth Sci, 14
MJF Barros (2015)
360Perspect Plant Ecol Evol Syst, 17
R Peakall, D Ebert, LJ Scott, PF Meagher, CA Offord (2003)
Comparative genetic study confirms exceptionally low genetic variation in the ancient and endangered relictual conifer, Wollemia nobilis (Araucariaceae)Mol Ecol, 12
PS Schlögl, AP Souza, RO Nodari (2007)
PCR-RFLP analysis of non-coding regions of cpDNA in Araucaria angustifolia (Bert.) O. KuntzeGenet Mol Biol, 30
B Glaser (2012)
39Geochim Cosmochim Acta, 82
CR Clement (1999)
1492 and the loss of amazonian crop genetic resources. I. The relation between domestication and human population declineEcon Bot, 53
Y-X Fu (1997)
915Genetics, 147
GF Paludo, MB Lauterjung, MS Reis, A Mantovani (2016)
Inferring population trends of Araucaria angustifolia (Araucariaceae) using a transition matrix model in an old-growth forestSouth For J For Sci, 78
CM Patreze, SM Tsai (2010)
Intrapopulational genetic diversity of Araucaria angustifolia (Bertol.) Kuntze is different when assessed on the basis of chloroplast or nuclear markersPlant Syst Evol, 284
VA Sousa, AM Sebbenn, HH Hattemer, M Ziehe (2005)
Correlated mating in populations of a dioecious Brazilian conifer, Araucaria angustifolia (Bert.) O. KtzeFor Genet, 12
J Corander (2008)
111Comput Stat, 23
G Iob, EM Vieira (2008)
Seed predation of Araucaria angustifolia (Araucariaceae) in the Brazilian Araucaria Forest: influence of deposition site and comparative role of small and “large” mammalsPlant Ecol, 198
K Hueck (1953)
Distribuição e habitat natural do Pinheiro do Paraná (Araucaria angustifolia)Bol da Fac Filos Ciências e Let Univ São Paulo, 10
L Medina-Macedo, AM Sebbenn, AEB Lacerda, JZ Ribeiro, CR Soccol, JVM Bittencourt (2015)
High levels of genetic diversity through pollen flow of the coniferous Araucaria angustifolia: a landscape level study in southern BrazilTree Genet Genomes, 11
C Vieira-da-Silva, MS Reis (2009)
Produção de pinhão na região de Caçador, SC: Aspectos da obtenção e sua importância para comunidades locaisCiência Florest, 19
JC Avise, J Arnold, RM Ball, E Bermingham, T Lamb, JE Neigel, CA Reeb, NC Saunders (1987)
Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematicsAnnu Rev Ecol Syst, 18
L Excoffier, HEL Lischer (2010)
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and windowsMol Ecol Resour, 10
N Mantel (1967)
The detection of disease clustering and a generalized regression approachCancer Res, 27
B Demesure, N Sodzi, RJ Petit (1995)
A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plantsMol Ecol, 4
WM Denevan (1992)
369Ann Assoc Am Geogr, 82
M Rossetto, EJ Ens, T Honings, PD Wilson, JYS Yap, O Costello, ER Round, C Bowern (2017)
From songlines to genomes: prehistoric assisted migration of a rain forest tree by Australian aboriginal peoplePLoS One, 12
BS Weir, CC Cockerham (1984)
Estimating F-statistics for the analysis of population structureEvolution (N Y), 38
LDS Duarte, MMG Dos-Santos, SM Hartz, VD Pillar (2006)
Role of nurse plants in Araucaria Forest expansion over grassland in South BrazilAustral Ecol, 31
H Behling (2001)
631J S Am Earth Sci, 14
K Hueck (1952)
Verbreitung und Standortsansprüche der brasilianischen Araukarie (Araucaria angustiolia)Forstwissenschaftliches Cent, 71
E Thomas, C Alcázar Caicedo, CH McMichael (2015)
Uncovering spatial patterns in the natural and human history of Brazil nut (Bertholletia excelsa) across the Amazon BasinJ Biogeogr, 42
B Cinget, S Gérardi, J Beaulieu, J Bousquet (2015)
Less pollen-mediated gene flow for more signatures of glacial lineages: congruent evidence from balsam fir cpDNA and mtDNA for multiple refugia in eastern and Central North AmericaPLoS One, 10
GF Paludo, RI Duarte, AP Bernardi, A Mantovani, MS Reis (2016)
The size of Araucaria angustifolia (Bertol.) Kuntze entering into reproductive stages as a basis for seed management projectsRev Árvore, 40
DK Ferreira, AG Nazareno, A Mantovani, R Bittencourt, AM Sebbenn, MS Reis (2012)
Genetic analysis of 50-year old Brazilian pine (Araucaria angustifolia) plantations: implications for conservation planningConserv Genet, 13
P Librado, J Rozas (2009)
DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataBioinformatics, 25
H Behling (1997)
Late quaternary vegetation, climate and fire history of the Araucaria forest and Campos region from Serra Campos Gerais, Paraná state (South Brazil)Rev Palaeobot Palynol, 97
MC Ribeiro, JP Metzger, AC Martensen, FJ Ponzoni, MM Hirota (2009)
The Brazilian Atlantic Forest: how much is left, and how is the remaining forest distributed? Implications for conservationBiol Conserv, 142
NMF Auler (2002)
329Genet Mol Biol, 25
HJ Bandelt, P Forster, A Rohl (1999)
Median-joining networks for inferring intraspecific phylogeniesMol Biol Evol, 16
Y-X Yang, M-L Wang, Z-L Liu, J Zhu, MY Yan, ZH Li (2016)
Nucleotide polymorphism and phylogeographic history of an endangered conifer species Pinus bungeanaBiochem Syst Ecol, 64
S Gérardi (2010)
5265Mol Ecol, 19
H Behling (1995)
Investigations into the late Pleistocene and Holocene history of vegetation and climate in Santa Catarina (South Brazil)Veg Hist Archaeobot, 4
LAV Bitencourt (2006)
109Rev Bras Paleontol, 9
JJ Doyle (1990)
13Focus (Madison), 12
M Nei (1987)
Molecular evolutionary genetics
C Vieira-da-Silva, G Martins, N Steiner (2011)
Espécies nativas da flora brasileira de valor econômico atual ou potencial: plantas para o futuro – Região Sul
S Dray (2007)
1J Stat Softw, 22
S Dray, A-B Dufour (2007)
The ade4 package: implementing the duality diagram for ecologistsJ Stat Softw, 22
HL Mogensen (1996)
The hows and whys of cytoplasmic inheritance in seed plantsAm J Bot, 83
S Kumar, G Stecher, K Tamura (2016)
MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasetsMol Biol Evol, 33
F Gugerli, C Sperisen, U Büchler (2001)
Haplotype variation in a mitochondrial tandem repeat of Norway spruce (Picea abies) populations suggests a serious founder effect during postglacial re-colonization of the western alpsMol Ecol, 10
H Behling (2004)
277Palaeogeogr Palaeoclimatol Palaeoecol, 203
JVM Bittencourt (2008)
855Conserv Genet, 9
DK Ferreira (2012)
435Conserv Genet, 13
AF Souza, C Forgiarini, SJ Longhi, DA Brena (2008)
Regeneration patterns of a long-lived dominant conifer and the effects of logging in southern South AmericaActa Oecol, 34
C Levis, FRC Costa, F Bongers (2017)
Persistent effects of pre-Columbian plant domestication on Amazonian forest compositionScience (80- ), 355
JC Avise (2009)
3J Biogeogr, 36
H Behling, VD Pillar, L Orlóci, SG Bauermann (2004)
Late quaternary Araucaria forest, grassland (Campos), fire and climate dynamics, studied by high-resolution pollen, charcoal and multivariate analysis of the Cambará do Sul core in southern BrazilPalaeogeogr Palaeoclimatol Palaeoecol, 203
DL Hartl, AG Clark (2007)
Principles of population genetics
R Reitz, RM Klein (1966)
Flora Ilustrada Catarinense
MIF Souza, F Salgueiro, M Carnavale-Bottino (2009)
Patterns of genetic diversity in southern and southeastern Araucaria angustifolia (Bert.) O. Kuntze relict populationsGenet Mol Biol, 32
N Adan, J Atchison, MS Reis, N Peroni (2016)
Local knowledge, use and management of ethnovarieties of Araucaria angustifolia (Bert.) Ktze. In the plateau of Santa Catarina, BrazilEcon Bot, 70
EM Vieira, JF Ribeiro, G Iob (2011)
Seed predation of Araucaria angustifolia (Araucariaceae) by small rodents in two areas with contrasting seed densities in the Brazilian Araucaria forestJ Nat Hist, 45
F Tajima (1989)
Statistical method for testing the neutral mutation hypothesis by DNA polymorphismGenetics, 123
LAV Bitencourt, PM Krauspenhar (2006)
Possible prehistoric anthropogenic effect on Araucaria angustifolia (Bert.) O. Kuntze expansion during the late holoceneRev Bras Paleontol, 9
I Gamache, JP Jaramillo-Correa, S Payette, J Bousquet (2003)
Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: imprint of a founder effect associated with postglacial colonizationMol Ecol, 12
G Paise, EM Vieira (2005)
Produção de frutos e distribuição espacial de angiospermas com frutos zoocóricos em uma Floresta Ombrófila Mista no Rio Grande do Sul, BrasilBrazilian J Bot, 28
J Corander, J Sirén, E Arjas (2008)
Bayesian spatial modeling of genetic population structureComput Stat, 23
HJ Bandelt (1999)
37Mol Biol Evol, 16
WM Denevan (1992)
The pristine myth: the landscape of the Americas in 1492Ann Assoc Am Geogr, 82
JN Owens, GL Catalano, SJ Morris, J Aitken-Christie (1995)
The reproductive riology of kauri (Agathis australis). II. Male gametes, fertilization, and cytoplasmic inheritanceInt J Plant Sci, 156
VM Stefenon, O Gailing, R Finkeldey (2007)
Genetic structure of Araucaria angustifolia (Araucariaceae) populations in Brazil: implications for the in situ conservation of genetic resourcesPlant Biol, 9
CR Clement (1999)
188Econ Bot, 53
MP Guerra, V Silveira, MS Reis, L Schneider (2002)
Sustentável Mata Atlântica: A exploração de seus recursos florestais
H Behling (1995)
127Veg Hist Archaeobot, 4
B Glaser, JJ Birk (2012)
State of the scientific knowledge on properties and genesis of anthropogenic dark earths in Central Amazonia (terra preta de Índio)Geochim Cosmochim Acta, 82
JH Zar (2010)
Biostatistical analysis
B Demesure (1995)
129Mol Ecol, 4
M Höhn, F Gugerli, P Abran, G Bisztray, A Buonamici, K Cseke, L Hufnagel, C Quintela-Sabarís, F Sebastiani, GG Vendramin (2009)
Variation in the chloroplast DNA of Swiss stone pine (Pinus cembra L.) reflects contrasting post-glacial history of populations from the Carpathians and the alpsJ Biogeogr, 36
LJ Scott, MJ Shepherd, DG Nikles, RJ Henry (2005)
Low efficiency of pseudotestcross mapping design was consistent with limited genetic diversity and low heterozygosity in hoop pine (Araucaria cunninghamii, Araucariaceae)Tree Genet Genomes, 1
S Gérardi, JP Jaramillo-Correa, J Beaulieu, J Bousquet (2010)
From glacial refugia to modern populations: new assemblages of organelle genomes generated by differential cytoplasmic gene flow in transcontinental black spruceMol Ecol, 19
B Cinget (2015)
1PLoS One, 10
F Rousset (1997)
Genetic differentiation and estimation of gene flow from F-statistics under isolation by distanceGenetics, 145
LDS Duarte (2006)
520Austral Ecol, 31
AH Ladio (2001)
The maintenance of wild edible plant gathering in a Mapuche community of PatagoniaEcon Bot, 55
H Behling (1997)
109Rev Palaeobot Palynol, 97
I Gamache (2003)
891Mol Ecol, 12
JJ Doyle, JL Doyle (1990)
Isolation of plant DNA from fresh tissueFocus (Madison), 12
Y-Z Cun, X-Q Wang (2015)
Phylogeography and evolution of three closely related species of Tsuga (hemlock) from subtropical eastern Asia: further insights into speciation of conifersJ Biogeogr, 42
C Filippo, K Bostoen, M Stoneking, B Pakendorf (2012)
Bringing together linguistic and genetic evidence to test the bantu expansionProc R Soc B Biol Sci, 279
V Rull, E Montoya (2014)
Mauritia flexuosa palm swamp communities: natural or human-made? A palynological study of the gran Sabana region (northern South America) within a neotropical contextQuat Sci Rev, 99
L Excoffier (2010)
564Mol Ecol Resour, 10
P Marchelli, C Baier, C Mengel, B Ziegenhagen, LA Gallo (2010)
Biogeographic history of the threatened species Araucaria araucana (Molina) K. Koch and implications for conservation: a case study with organelle DNA markersConserv Genet, 11
L Excoffier, PE Smouse, JM Quattro (1992)
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction dataGenetics, 131
J Iriarte, H Behling (2007)
The expansion of Araucaria forest in the southern Brazilian highlands during the last 4000 years and its implications for the development of the Taquara/Itararé traditionEnviron Archaeol, 12
MS Reis, A Ladio, N Peroni (2014)
Landscapes with Araucaria in South America: evidence for a cultural dimensionEcol Soc, 19
D Kaur, SP Bhatnagar (1985)
Fertilization and formation of neocytoplasm in Agathis robustaPhytomorphology, 34
FS Noelli (2000)
A ocupação humana na região Sul do Brasil: arqueologia, debates e perspectivas 1872-2000Rev USP, 0
C Filippo de (2012)
3256Proc R Soc B Biol Sci, 279
JF Ornelas, E Ruiz-Sánchez, V Sosa (2010)
Phylogeography of Podocarpus matudae (Podocarpaceae): pre-quaternary relicts in northern Mesoamerican cloud forestsJ Biogeogr, 37
JVM Bittencourt, AM Sebbenn (2008)
Pollen movement within a continuous forest of wind-pollinated Araucaria angustifolia, inferred from paternity and TwoGener analysisConserv Genet, 9
JVM Bittencourt (2007)
580Heredity (Edinb), 99
JC Avise (2009)
Phylogeography: retrospect and prospectJ Biogeogr, 36
Y-X Fu (1997)
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selectionGenetics, 147
F Sanger, S Nicklen, AR Coulson (1977)
DNA sequencing with chain-terminating inhibitorsProc Natl Acad Sci U S A, 74
C Levis, BM Flores, PA Moreira, BG Luize, RP Alves, J Franco-Moraes, J Lins, E Konings, M Peña-Claros, F Bongers, FRC Costa, CR Clement (2018)
How people domesticated Amazonian forestsFront Ecol Evol, 5
N Adan (2016)
353Econ Bot, 70
GH Shepard, H Ramirez (2011)
“Made in Brazil”: human dispersal of the Brazil nut (Bertholletia excelsa, Lecythidaceae) in ancient AmazoniaEcon Bot, 65
A Mantovani, LPC Morellato, MS Reis (2006)
Internal genetic structure and outcrossing rate in a natural population of Araucaria angustifolia (Bert.) O. KuntzeJ Hered, 97
WT Sinclair, JD Morman, RA Ennos (1999)
The postglacial history of scots pine (Pinus sylvestris L.) in western Europe: evidence from mitochondrial DNA variationMol Ecol, 8
MJF Barros, GA Silva-Arias, JN Fregonezi, AC Turchetto-Zolet, JRV Iganci, JAF Diniz-Filho, LB Freitas (2015)
Environmental drivers of diversity in subtropical highland grasslandsPerspect Plant Ecol Evol Syst, 17
Phylogeographic studies allow us to better understand the past history of species and the factors that mold their current distribution. Here, we demonstrate the potential human impact on the distribution of a tree species. In particular, it was hypothesized that Araucaria angustifolia, an endangered South American conifer, was dispersed from its Pleistocene glacial refugium to its maximum occurrence distribution (MOD), mainly by pre-Columbian human groups (ca 2000 years ago). In order to test this hypothesis, we sampled 20 A. angustifolia populations in southern Brazil. Our analysis consisted of an integrative phylogeographic approach, supported by ecological aspects of the species. Therefore, we constructed the species chloroplast haplotype network, tested for possible neutrality deviations, genetic divergence, association between genetic and geographic distances, and simulated the amount of time that the species required to reach its MOD without human help. The species showed clear signs of rapid and recent expansion from a single refugium. The haplotype network had a star-like shape. Populations and the species showed negative values for the neutrality tests and low divergence values among populations (FST = 0.041) not associated with geographic distance. The estimated dispersal time required for the species to reach its MOD from its putative refugium without human help is not consistent with the rapid and recent expansion of the species. Hence, we argue that humans played an important role in expanding the distribution of the currently endangered species, and it needs to be accounted for when analyzing landscape genetics or in the development of conservation strategies.
Tree Genetics & Genomes – Springer Journals
Published: May 10, 2018
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.