Paraburkholderia panacihumi sp. nov., an isolate from ginseng-cultivated soil, is antagonistic against root rot fungal pathogen

Paraburkholderia panacihumi sp. nov., an isolate from ginseng-cultivated soil, is antagonistic... The novel species DCY115 was isolated from ginseng-cultivated soil in Gochang province, Republic of Korea. The iso- lated strain was assigned to the genus Paraburkholderia due to its 16S rRNA gene sequence proximity to Paraburkholde- T T T ria xenovorans LB400 (98.8%), Paraburkholderia terricola LMG 20594 (98.4%), Paraburkholderia graminis C4D1M T T (98.2%), Paraburkholderia rhynchosiae WSM3937 (98.1%), and Paraburkholderia phytofirmans PsJN (98.1%). Strain DCY115 is gram-negative, facultative aerobic, rod-shaped, non-motile, non-flagellated, and oxidase and catalase positive. The predominant isoprenoid quinone of DCY115 is ubiquinone Q-8. The major cellular fatty acids are C , cyclo-C , 16:0 17:0 cyclo-C ω8c, summed feature 3 (C ω7c and/or C ω6c) and summed feature 8 (C ω7c and/or C ω6c). The 19:0 16:1 16:1 18:1 18:1 major polar lipids include diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), and an unknown amino lipid (AL1). The genomic DNA G + C content is 61.3 mol%. Phenotypic tests and chemotaxonomic T T analysis place strain DCY115 in the genus Paraburkholderia. DNA–DNA hybridization values between strain DCY115 and closely related reference strains were lower than 51%. The low DNA relatedness data in combination with phylogenetic T T and biochemical tests showed that strain DCY115 could not be assigned to http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Archives of Microbiology Springer Journals

Paraburkholderia panacihumi sp. nov., an isolate from ginseng-cultivated soil, is antagonistic against root rot fungal pathogen

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Publisher
Springer Berlin Heidelberg
Copyright
Copyright © 2018 by Springer-Verlag GmbH Germany, part of Springer Nature
Subject
Life Sciences; Microbiology; Microbial Ecology; Biochemistry, general; Cell Biology; Biotechnology; Ecology
ISSN
0302-8933
eISSN
1432-072X
D.O.I.
10.1007/s00203-018-1530-2
Publisher site
See Article on Publisher Site

Abstract

The novel species DCY115 was isolated from ginseng-cultivated soil in Gochang province, Republic of Korea. The iso- lated strain was assigned to the genus Paraburkholderia due to its 16S rRNA gene sequence proximity to Paraburkholde- T T T ria xenovorans LB400 (98.8%), Paraburkholderia terricola LMG 20594 (98.4%), Paraburkholderia graminis C4D1M T T (98.2%), Paraburkholderia rhynchosiae WSM3937 (98.1%), and Paraburkholderia phytofirmans PsJN (98.1%). Strain DCY115 is gram-negative, facultative aerobic, rod-shaped, non-motile, non-flagellated, and oxidase and catalase positive. The predominant isoprenoid quinone of DCY115 is ubiquinone Q-8. The major cellular fatty acids are C , cyclo-C , 16:0 17:0 cyclo-C ω8c, summed feature 3 (C ω7c and/or C ω6c) and summed feature 8 (C ω7c and/or C ω6c). The 19:0 16:1 16:1 18:1 18:1 major polar lipids include diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), and an unknown amino lipid (AL1). The genomic DNA G + C content is 61.3 mol%. Phenotypic tests and chemotaxonomic T T analysis place strain DCY115 in the genus Paraburkholderia. DNA–DNA hybridization values between strain DCY115 and closely related reference strains were lower than 51%. The low DNA relatedness data in combination with phylogenetic T T and biochemical tests showed that strain DCY115 could not be assigned to

Journal

Archives of MicrobiologySpringer Journals

Published: Jun 5, 2018

References

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