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Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus

Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the... The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae , tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus . The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Archives of Virology Springer Journals

Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus

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References (11)

Publisher
Springer Journals
Copyright
Copyright © 2015 by Springer-Verlag Wien
Subject
Biomedicine; Virology; Medical Microbiology; Infectious Diseases
ISSN
0304-8608
eISSN
1432-8798
DOI
10.1007/s00705-015-2553-5
pmid
26264403
Publisher site
See Article on Publisher Site

Abstract

The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae , tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus . The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.

Journal

Archives of VirologySpringer Journals

Published: Nov 1, 2015

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