Molecular cloning and characterization of the Amylose-Extender gene encoding starch branching enzyme IIB in maize

Molecular cloning and characterization of the Amylose-Extender gene encoding starch branching... The amylose-extender (Ae) gene encoding starch-branching enzyme IIb (SBEIIb) in maize is predominantly expressed in endosperm and embryos during kernel development. A maize genomic DNA fragment (−2964 to +20 485) containing the Ae gene was isolated and sequenced. The maize Ae mRNA is derived from 22 exons distributed over 16 914 bp. Twenty-one introns, differing in length from 76 bp to 4020 bp, all have conserved junction sequences (GT⋅⋅AG). Sequence analysis of the 5′- and 3′-flanking regions revealed a consensus TATA-box sequence located 28 bp upstream of the transcription initiation site as determined by primer extension analysis, and a putative polyadenylation signal observed 29 bp upstream of the polyadenylation site based on cDNA sequence. Genomic Southern blot analysis suggests that a single Ae gene is present in the maize genome. Promoter activity was confirmed by testing a transcriptional fusion of the Ae 5′-flanking region between −2964 and +100 to a luciferase reporter gene in a transient expression assay using maize endosperm suspension cultured cells. 5′ deletion analysis revealed that the 111 bp region from −160 to −50 is essential for high-level promoter activity. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Plant Molecular Biology Springer Journals

Molecular cloning and characterization of the Amylose-Extender gene encoding starch branching enzyme IIB in maize

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Publisher
Kluwer Academic Publishers
Copyright
Copyright © 1998 by Kluwer Academic Publishers
Subject
Life Sciences; Biochemistry, general; Plant Sciences; Plant Pathology
ISSN
0167-4412
eISSN
1573-5028
D.O.I.
10.1023/A:1006057609995
Publisher site
See Article on Publisher Site

Abstract

The amylose-extender (Ae) gene encoding starch-branching enzyme IIb (SBEIIb) in maize is predominantly expressed in endosperm and embryos during kernel development. A maize genomic DNA fragment (−2964 to +20 485) containing the Ae gene was isolated and sequenced. The maize Ae mRNA is derived from 22 exons distributed over 16 914 bp. Twenty-one introns, differing in length from 76 bp to 4020 bp, all have conserved junction sequences (GT⋅⋅AG). Sequence analysis of the 5′- and 3′-flanking regions revealed a consensus TATA-box sequence located 28 bp upstream of the transcription initiation site as determined by primer extension analysis, and a putative polyadenylation signal observed 29 bp upstream of the polyadenylation site based on cDNA sequence. Genomic Southern blot analysis suggests that a single Ae gene is present in the maize genome. Promoter activity was confirmed by testing a transcriptional fusion of the Ae 5′-flanking region between −2964 and +100 to a luciferase reporter gene in a transient expression assay using maize endosperm suspension cultured cells. 5′ deletion analysis revealed that the 111 bp region from −160 to −50 is essential for high-level promoter activity.

Journal

Plant Molecular BiologySpringer Journals

Published: Oct 6, 2004

References

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