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A. Gorbalenya, V. Blinov, A. Donchenko, E. Koonin (1989)
An NTP-binding motif is the most conserved sequence in a highly diverged monophyletic group of proteins involved in positive strand RNA viral replicationJournal of Molecular Evolution, 28
I. Livieratos, R. Coutts (2002)
Nucleotide Sequence and Phylogenetic Analysis of Cucurbit Yellow Stunting Disorder Virus RNA 2Virus Genes, 24
Xiongfong Chen, Ray Wu (1997)
Direct amplification of unknown genes and fragments by Uneven polymerase chain reaction.Gene, 185 2
E. Koonin (1991)
The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses.The Journal of general virology, 72 ( Pt 9)
J. Kreuze, E. Savenkov, J. Valkonen (2002)
Complete Genome Sequence and Analyses of the Subgenomic RNAs of Sweet Potato Chlorotic Stunt Virus Reveal Several New Features for the Genus CrinivirusJournal of Virology, 76
D. Alzhanova, Y. Hagiwara, V. Peremyslov, V. Dolja (2000)
Genetic analysis of the cell-to-cell movement of beet yellows closterovirus.Virology, 268 1
A. Agranovsky (1996)
Principles of Molecular Organization, Expression, and Evolution of Closteroviruses: Over The BarriersAdvances in Virus Research, 47
D. Engelbrecht, G. Kasdorf (1990)
Transmission of grapevine leafroll disease and associated closteroviruses by the vine mealybug, Planococcus ficus., 22
X. Che, W. Dawson, M. Bar-joseph (2003)
Defective RNAs of Citrus tristeza virus analogous to Crinivirus genomic RNAs.Virology, 310 2
A. Little, C. Fazeli, M. Rezaian (2001)
Hypervariable genes in Grapevine leafroll associated virus 1.Virus research, 80 1-2
J. Theilmann, J. Mozafari, R. Reade, Z. Wu, W. Xie, G. Jesperson, M. Bernardy, K. Eastwell, D. Rochon (2002)
Partial Nucleotide Sequence and Genome Organization of a Canadian Isolate of Little cherry virus and Development of an Enzyme-Linked Immunosorbent Assay-Based Diagnostic Test.Phytopathology, 92 1
A. Agranovsky, E. Koonin, V. Boyko, E. Maiss, R. Frötschl, N. Lunina, J. Atabekov (1994)
Beet yellows closterovirus: complete genome structure and identification of a leader papain-like thiol protease.Virology, 198 1
M. Kozak (1987)
An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs.Nucleic acids research, 15 20
M. Borodovsky, J. McIninch (1993)
Recognition of genes in DNA sequence with ambiguities.Bio Systems, 30 1-3
M. Rott, W. Jelkmann (2001)
Characterization and Detection of Several Filamentous Viruses of Cherry: Adaptation of an Alternative Cloning Method (DOP-PCR), and Modification of an RNA Extraction ProtocolEuropean Journal of Plant Pathology, 107
(1997)
Direct amplification of unknown
M. Melzer, A. Karasev, D. Sether, J. Hu (2001)
Nucleotide sequence, genome organization and phylogenetic analysis of pineapple mealybug wilt-associated virus-2.The Journal of general virology, 82 Pt 1
(2003)
and fragments by Uneven polymerase chain reaction
C. Peng, V. Dolja (2000)
Leader Proteinase of the Beet Yellows Closterovirus: Mutation Analysis of the Function in Genome AmplificationJournal of Virology, 74
H. Zhu, K. Ling, D. Goszczynski, J. McFerson, D. Gonsalves (1998)
Nucleotide sequence and genome organization of grapevine leafroll-associated virus-2 are similar to beet yellows virus, the closterovirus type member.The Journal of general virology, 79 ( Pt 5)
K. Eastwell, M. Bernardy (2001)
Partial characterization of a closterovirus associated with apple mealybug-transmitted little cherry disease in north america.Phytopathology, 91 3
(1992)
The nucleotide sequence of the mRNA segment of tomato spotted wilt virus, a bunyavirus with two
(2002)
Nucleotide sequence and phylogenetic analysis of Cucurbit yellow stunting disorder virus
(1997)
Recent information on the molecular characterization of grapevine leafroll virus-3
P. Kong, L. Rubio, M. Polek, B. Falk (2000)
Population Structure and Genetic Diversity within California Citrus tristeza virus (CTV) IsolatesVirus Genes, 21
A. Karasev (2000)
Genetic Diversity and Evolution of Closteroviruses.Annual review of phytopathology, 38
M. Ayllón, C. López, J. Navas-Castillo, M. Mawassi, W. Dawson, J. Guerri, R. Flores, P. Moreno (1999)
New defective RNAs from citrus tristeza virus: evidence for a replicase-driven template switching mechanism in their generation.The Journal of general virology, 80 ( Pt 3)
W. Jelkmann (1995)
Cherry virus A: cDNA cloning of dsRNA, nucleotide sequence analysis and serology reveal a new plant capillovirus in sweet cherry.The Journal of general virology, 76 ( Pt 8)
G. Martelli, A. Agranovsky, M. Bar-joseph, D. Boscia, T. Candresse, R. Coutts, V. Dolja, B. Falk, D. Gonsalves, W. Jelkmann, A. Karasev, A. Minafra, S. Namba, H. Vetten, G. Wisler, N. Yoshikawa (2002)
The family Closteroviridae revisedArchives of Virology, 147
M. Mawassi, T. Satyanarayana, M. Albiach-Martí, S. Gowda, M. Ayllón, C. Robertson, W. Dawson (2000)
The fitness of citrus tristeza virus defective RNAs is affected by the lengths of their 5'- and 3'-termini and by the coding capacity.Virology, 275 1
Alberto Napuli, B. Falk, V. Dolja (2000)
Interaction between HSP70 homolog and filamentous virions of the Beet yellows virus.Virology, 274 1
Mikhail Rozanov, E. Koonin, A. Gorbalenya (1992)
Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses.The Journal of general virology, 73 ( Pt 8)
A. Gorbalenya, E. Koonin (1993)
Helicases: amino acid sequence comparisons and structure-function relationshipsCurrent Opinion in Structural Biology, 3
R. Coutts, I. Livieratos (2003)
Nucleotide sequence and genome organization of Cucurbit yellow stunting disorder virus RNA1Archives of Virology, 148
E. Koonin, V. Dolja, T. Morris (1993)
Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences.Critical reviews in biochemistry and molecular biology, 28 5
A. Karasev, V. Boyko, S. Gowda, O. Nikolaeva, M. Hilf, E. Koonin, C. Niblett, K. Cline, D. Gumpf, R. Lee, S. Garnsey, D. Lewandowski, W. Dawson (1995)
Complete sequence of the citrus tristeza virus RNA genome.Virology, 208 2
W. Jelkmann, B. Fechtner, A. Agranovsky (1997)
Complete genome structure and phylogenetic analysis of little cherry virus, a mealybug-transmissible closterovirus.The Journal of general virology, 78 ( Pt 8)
S. Hartono, T. Natsuaki, Y. Genda, S. Okuda (2003)
Nucleotide sequence and genome organization of Cucumber yellows virus, a member of the genus Crinivirus.The Journal of general virology, 84 Pt 4
L. Rubio, H. Yeh, T. Tian, B. Falk (2000)
A heterogeneous population of defective RNAs is associated with lettuce infectious yellows virus.Virology, 271 1
M. Rott, W. Jelkmann (2001)
Detection and Partial Characterization of a Second Closterovirus Associated with Little Cherry Disease, Little cherry virus-2.Phytopathology, 91 3
M. Mawassi, Elzbieta Mietkiewska, R. Gofman, Guang Yang, M. Bar-Joseph (1996)
Unusual sequence relationships between two isolates of citrus tristeza virus.The Journal of general virology, 77 ( Pt 9)
M. Mawassi, T. Satyanarayana, S. Gowda, M. Albiach-Martí, C. Robertson, W. Dawson (2000)
Replication of heterologous combinations of helper and defective RNA of citrus tristeza virus.Virology, 267 2
J. Raine, R. McMullen, A. Forbes (1986)
Transmission of the Agent Causing Little Cherry Disease by the Apple Mealybug Phenacoccus Aceris and the dodder Cuscuta LupuliformisCanadian Journal of Plant Pathology-revue Canadienne De Phytopathologie, 8
Mami Takahashi, S. Toriyama, C. Hamamatsu, Akira Ishihama (1993)
Nucleotide sequence and possible ambisense coding strategy of rice stripe virus RNA segment 2.The Journal of general virology, 74 ( Pt 4)
L. Rubio, M. Ayllón, P. Kong, A. Fernández, M. Polek, J. Guerri, P. Moreno, B. Falk (2001)
Genetic Variation of Citrus Tristeza VirusIsolates from California and Spain: Evidence for Mixed Infections and RecombinationJournal of Virology, 75
A. Karasev, O. Nikolaeva, A. Mushegian, R. Lee, W. Dawson (1996)
Organization of the 3'-terminal half of beet yellow stunt virus genome and implications for the evolution of closteroviruses.Virology, 221 1
Valery Peremyslov, Yuka Hagiwara, V. Dolja (1998)
Genes Required for Replication of the 15.5-Kilobase RNA Genome of a Plant ClosterovirusJournal of Virology, 72
V. Klaassen, M. Boeshore, E. Koonin, T. Tian, B. Falk (1995)
Genome structure and phylogenetic analysis of lettuce infectious yellows virus, a whitefly-transmitted, bipartite closterovirus.Virology, 208 1
K. Ling, H. Zhu, R. Drong, J. Slightom, J. McFerson, D. Gonsalves (1998)
Nucleotide sequence of the 3'-terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus.The Journal of general virology, 79 ( Pt 5)
N. Hadjeb, Gerald Berkowitz (1996)
Preparation of T-over-hang vectors with high PCR product cloning efficiency.BioTechniques, 20 1
R. Zinovkin, T. Erokhina, D. Lesemann, W. Jelkmann, A. Agranovsky (2003)
Processing and subcellular localization of the leader papain-like proteinase of Beet yellows closterovirus.The Journal of general virology, 84 Pt 8
The complete genomic sequence of variant USA6b of Little cherry virus-2 (LChV-2), has been determined and is 15045 nucleotides in length, coding for 11 open reading frames (ORFs). The sequence shares 77.2% identity with a previously published, ca. 6 kb partial replicase sequence of LChV-2 (variant USA6a). Both LChV-2/USA6a and LChV-2/USA6b were obtained from the same tree infected with little cherry disease, and would suggest a mixed infection. LChV-2/USA6b is more closely related to the partially determined genomic sequence of a Canadian isolate of LChV-2, strain LC5 (92.9% identity). LChV-2/USA6b has an unusual genomic organization compared to other members of the Closteroviridae . The LChV-2/USA6b genome is potentially ambi-sense, with a negative sense ORF0 at the 5′ terminus, from which an 18.1 kDa protein of unknown function can be expressed in vitro . The N-terminal region of the LChV-2/USA6 ORF1a translation product does not code for a papain-like protease motif. ORF1 codes for a novel motif, of unknown function, also present in isolates of the Grapevine leafroll associated virus-3 , (genus Ampelovirus ) as well as viruses of the family Flexiviridae . ORF3 lacks an AUG start codon, but could potentially be expressed via read-through of the ORF2 stop codon. At the 3′ end, there is a re-organization of encoded genes compared with other members of the Closteroviridae including separation of the coat protein and coat protein duplicate genes by 4 other genes as found for LChV-2/LC5.
Archives of Virology – Springer Journals
Published: Jan 1, 2005
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