Investigating species boundaries using DNA and morphology in the mite Tyrophagus curvipenis (Acari: Acaridae), an emerging invasive pest, with a molecular phylogeny of the genus Tyrophagus

Investigating species boundaries using DNA and morphology in the mite Tyrophagus curvipenis... Mites of the genus Tyrophagus (Acari: Acaridae) are among the most widespread and common mites, inhabiting diverse natural and anthropogenic habitats. Some species are pests of agricultural products and stored food and/or live in house dust, causing allergies to humans. We sequenced 1.2 kb of the mitochondrial COI gene for 38 individuals belonging to seven species of Tyrophagus, including T. curvipenis, T. putrescentiae, T. fanetzhangorum, T. longior, T. perniciosus, and T. cf. similis. Molecular phylogenetic analyses (1) recovered two major clades corresponding to the presence or absence of eyespots, and (2) separated all included morphological species. Tyrophagus curvipenis and T. putrescentiae had the lowest between-species genetic distances (range, mean ± SD): 14.20–16.30, 15.17 ± 0.40 (K2P). The highest within-species variation was found in T. putrescentiae 0.00–4.33, 1.78 ± 1.44 (K2P). In this species, we recovered two distinct groups; however, no geographical or ecological dissimilarities were observed between them. Based on our analyses, we document important morphological differences between T. curvipenis and T. putrescentiae. For the first time, we record the occurrence of T. curvipenis in the New World and suggest that it may be an emerging pest as it is currently spreading in agricultural produce. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Experimental and Applied Acarology Springer Journals

Investigating species boundaries using DNA and morphology in the mite Tyrophagus curvipenis (Acari: Acaridae), an emerging invasive pest, with a molecular phylogeny of the genus Tyrophagus

23 pages
Read Article

Loading next page...
 
/lp/springer_journal/investigating-species-boundaries-using-dna-and-morphology-in-the-mite-u607tZGhjI
Publisher
Springer Journals
Copyright
Copyright © 2018 by Springer International Publishing AG, part of Springer Nature
Subject
Life Sciences; Entomology; Animal Systematics/Taxonomy/Biogeography; Animal Genetics and Genomics; Animal Ecology; Life Sciences, general
ISSN
0168-8162
eISSN
1572-9702
D.O.I.
10.1007/s10493-018-0256-9
Publisher site
See Article on Publisher Site

Abstract

Mites of the genus Tyrophagus (Acari: Acaridae) are among the most widespread and common mites, inhabiting diverse natural and anthropogenic habitats. Some species are pests of agricultural products and stored food and/or live in house dust, causing allergies to humans. We sequenced 1.2 kb of the mitochondrial COI gene for 38 individuals belonging to seven species of Tyrophagus, including T. curvipenis, T. putrescentiae, T. fanetzhangorum, T. longior, T. perniciosus, and T. cf. similis. Molecular phylogenetic analyses (1) recovered two major clades corresponding to the presence or absence of eyespots, and (2) separated all included morphological species. Tyrophagus curvipenis and T. putrescentiae had the lowest between-species genetic distances (range, mean ± SD): 14.20–16.30, 15.17 ± 0.40 (K2P). The highest within-species variation was found in T. putrescentiae 0.00–4.33, 1.78 ± 1.44 (K2P). In this species, we recovered two distinct groups; however, no geographical or ecological dissimilarities were observed between them. Based on our analyses, we document important morphological differences between T. curvipenis and T. putrescentiae. For the first time, we record the occurrence of T. curvipenis in the New World and suggest that it may be an emerging pest as it is currently spreading in agricultural produce.

Journal

Experimental and Applied Acarology – Springer Journals

Published: Apr 26, 2018

References

  • Mite fauna in foliage and litter of Medicago species in Greece
    Badieritakis, EG; Thanopoulos, RC; Emmanouel, NG
  • Median-joining networks for inferring intraspecific phylogenies
    Bandelt, HJ; Forster, P; Röhl, A
  • Mite species identification in the production of allergenic extracts for clinical use and in environmental samples by ribosomal DNA amplification
    Beroiz, B; Couso-Ferrer, F; Ortego, F; Chamorro, MJ; Arteaga, C; Lombardero, M
  • Integrated Bayesian species delimitation and morphological diagnostics of chorioptic mange mites (Acariformes: Psoroptidae: Chorioptes)
    Bochkov, AV; Klimov, PB; Hestvik, G; Saveljev, AP
  • Tyrophagus longior (Gervais) (Acarina; Acaridae) as a pest of ornamentals grown under protection
    Buxton, JH
  • How to fail at species delimitation
    Carstens, BC; Pelletier, TA; Reid, NM; Satler, JD
  • First record of Tyrophagus putrescentiae (Schrank) (Acari: Acaridae) in soybean plants under no tillage in Minas Gerais, Brazil
    Oliveira, CM; Martins, C; Návia, D; Frizzas, MR
  • Datamonkey: a suite of phylogenetic analysis tools for evolutionary biology
    Delport, W; Poon, AF; Frost- Simon, DW; Kosakovsky-Pond, SL
  • The unholy trinity: taxonomy, species delimitation and DNA barcoding
    DeSalle, R; Egan, MG; Siddall, M
  • Fundamentals of applied acarology
    Dhooria, MS
  • DNA barcoding and minibarcoding as a powerful tool for feather mite studies
    Doña, J; Diaz-Real, J; Mironov, S; Bazaga, P; Serrano, D; Jovani, R
  • A preliminary framework for DNA barcoding, incorporating the multispecies coalescent
    Dowton, M; Meiklejohn, K; Cameron, SL; Wallman, J
  • Mites in fungal cultures
    Duek, L; Kaufman, G; Palevsky, E; Berdicevsky, I
  • Populations of stored product mite Tyrophagus putrescentiae differ in their bacterial communities
    Erban, T; Klimov, PB; Smrz, J; Phillips, TW; Nesvorna, M; Kopecky, J; Hubert, J
  • Tyrophagus curvipenis n.sp. from an orchid cultivation in a green-house in Portugal (Acari: Acaridae)
    Fain, A; Fauvel, G
  • Tyrophagus (Acari: Astigmata: Acaridae). Fauna of New Zealand 56
    Fan, Q-H; Zhang, Z-Q
  • Comment on the proposed conservation of usage by designation of a replacement neotype for Acarus putrescentiae Schrank, 1781 (currently Tyrophagus putrescentiae; Acariformes, Acaridae)
    Fan, Q-H; Zhang, Z-Q
  • Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci?
    Felsenstein, J
  • Observation of a new pest of cucumber in western Switzerland, Tyrophagus neiswanderi Johnston and Bruce (Acari: Acaridae)
    Fisher, S
  • A codon-based model of nucleotide substitution for protein coding DNAsequences
    Goldman, N; Yang, ZH
  • An evaluation of sampling effects on multiple DNA barcoding methods leads to an integrative approach for delimiting species: a case study of the North American tarantula genus Aphonopelma (Araneae, Mygalomorphae, Theraphosidae)
    Hamilton, CA; Hendrixson, BE; Brewer, MS; Bond, JE
  • Complex interactions between Rhizoglyphus robini and Fusarium oxysporum: implications on onion pest management
    Hanuny, T; Inbar, M; Tsror, L; Palevsky, E
  • Biological identifications through DNA barcodes
    Hebert, PDN; Cywinska, A; Ball, SL; deWaard, JR
  • Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
    Hebert, PDN; Penton, EH; Burns, JM; Janzen, DH; Hallwachs, W
  • Identification of birds through DNA barcodes
    Hebert, PDN; Stoeckle, MY; Zemlak, TS; Francis, CM
  • Bayesian inference of species trees from multilocus data
    Heled, J; Drummond, AJ
  • Mites and fungi in heavily infested stores in the Czech Republic
    Hubert, J; Stejskal, V; Münzbergová, Z; Kubátová, A; Váňová, M; Žďárková, E
  • MRBAYES: Bayesian inference of phylogeny
    Huelsenbeck, JP; Ronquist, F
  • Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding
    Janzen, DH; Hajibabaei, M; Burns, JM; Hallwachs, W; Remigio, E; Hebert, PDN
  • Seasonal prevalence and susceptibility to agrochemicals of Tyrophagus similis (Acari: Acaridae) in spinach buds and agricultural soil under greenhouse conditions
    Kasuga, S; Amano, H
  • Infestation of Tyrophagus similis Volgin (Acari: Acaridae) on spinach during the seed germination period
    Kasuga, S; Amano, H
  • Suitability of organic matter, fungi and vegetables as food for Tyrophagus similis (Acari: Acaridae)
    Kasuga, S; Honda, K
  • Molecular identification and phylogenetic analysis of economically important acaroid mites (Acari: Astigmata: Acaroidea) in Korea
    Khaing, TM; Shim, J-K; Lee, K-Y
  • Molecular identification of four Panonychus species (Acari: Tetranychidae) in Korea, including new records of P. caglei and P. mori
    Khaing, TM; Shim, J-K; Lee, K-Y
  • Origin and higher-level relationships of psoroptidian mites (Acari: Astigmata: Psoroptidia): evidence from three nuclear genes
    Klimov, PB; OConnor, BM
  • Conservation of the name Tyrophagus putrescentiae, a medically and economically important mite species (Acari: Acaridae)
    Klimov, PB; OConnor, BM
  • Acarus putrescentiae Schrank, 1781 (currently Tyrophagus putrescentiae; Acariformes, Acaridae): proposed conservation of usage by designation of a replacement neotype
    Klimov, PB; OConnor, BM
  • Comment on Acarus putrescentiae Schrank, 1781 (currently Tyrophagus putrescentiae; Acariformes, Acaridae): proposed conservation of usage by designation of a replacement neotype
    Klimov, PB; OConnor, BM
  • Convergent and unidirectional evolution of extremely long aedeagi in the largest feather mite genus, Proctophyllodes (Acari: Proctophyllodidae): evidence from comparative molecular and morphological phylogenetics
    Klimov, PB; Mironov, SV; OConnor, BM
  • Comprehensive phylogeny of acariform mites (Acariformes) provides insights on the origin of the four-legged mites (Eriophyoidea), a long branch
    Klimov, PB; OConnor, BM; Chetverikov, PE; Bolton, SJ; Pepato, AR; Mortazavi, AL; Tolstikov, AV; Bauchan, GR; Ochoa, R
  • HyPhy: hypothesis testing using phylogenies
    Kosakovsky-Pond, SL; Frost, SDW; Muse, SV
  • MEGA7: molecular evolutionary genetics analysis v. 7.0 for bigger datasets
    Kumar, S; Stecher, G; Tamura, K
  • Crown mite damage on spinach: investigations demonstrate value of early chemical treatment for control of relatively new mite affecting spinach leaves
    Lange, WH; Bacon, OG
  • PopArt: full-feature software for haplotype network construction
    Leigh, JW; Bryant, D
  • COI barcoding as a molecular assay for the identification of phytoseiid mites
    Li, J-B; Li, Y-X; Sun, J-T; Xue, X-F; Xu, X-N; Hong, X
  • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    Librado, P; Rozas, J
  • DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success
    Meier, R; Shiyang, K; Vaidya, G; Ng, PK
  • Detecting individual sites subject to episodic diversifying selection
    Murrell, B; Wertheim, JO; Moola, S; Weighill, T; Scheffler, K; Kosakovsky-Pond, SL
  • Gene-wide identification of episodic selection
    Murrell, B; Weaver, S; Smith, MD; Wertheim, JO; Murrell, S; Aylward, A; Eren, K; Pollner, T; Martin, DP; Smith, DM; Scheffler, K; Kosakovsky-Pond, SL
  • Mitochondrial COI sequences in mites: evidence for variations in base composition
    Navajas, M; Fournier, D; Lagnel, J; Gutierrez, J; Boursot, P
  • Identification of astigmatid mites using the second internal transcribed spacer (ITS2) region and its application for phylogenetic study
    Noge, K; Mori, N; Tanaka, C; Nishida, R; Tsuda, M; Kuwahara, Y
  • New heuristic methods for joint species delimitation and species tree inference
    O’Meara, B
  • A manual of acarology
    OConnor, BM
  • The integrative future of taxonomy
    Padial, JM; Miralles, A; Riva, I; Vences, M
  • Global divergence of the human follicle mite Demodex folliculorum: persistent associations between host ancestry and mite lineages
    Palopoli, MF; Fergus, DJ; Minot, S; Pei, DT; Simison, WB; Fernandez-Silva, I
  • From integrative taxonomy to species description: one step beyond
    Pante, E; Schoelinck, C; Puillandre, N
  • Molecular evolution of a widely-adopted taxonomic marker (COI) across the animal tree of life
    Pentinsaari, M; Salmela, H; Mutanen, M; Roslin, T
  • ABGD, automatic barcode gap discovery for primary species delimitation
    Puillandre, N; Lambert, A; Brouillet, S; Achaz, G
  • Complete mitochondrial genome of the mold mite, Tyrophagus putrescentiae (Acari: Acaridae)
    Que, S; Zou, Z; Xin, T; Xia, B
  • Improved reversible jump algorithms for Bayesian species delimitation
    Rannala, B; Yang, Z
  • A revision of the genus Tyrophagus, with a discussion on its taxonomic position in the Acarina
    Robertson, PL
  • Highlighting Astyanax species diversity through DNA barcoding
    Rossini, BC; Oliveira, CAM; Melo, FAG; Bertaco, VD; Astarloa, JMD; Rosso, JJ
  • Integrative taxonomy: a multisource approach to exploring biodiversity
    Schlick-Steiner, BC; Steiner, FM; Seifert, B; Stauffer, C; Erhard, C; Crozier, RH
  • The cereal rust mite Abacarus hystrix (Acari: Eriophyoidea) is a complex of species: evidence from mitochondrial and nuclear DNA sequences
    Skoracka, A; Dabert, M
  • DNA barcoding for effective biodiversity assessment of ahyperdiverse arthropod group: the ants of Madagascar
    Smith, MA; Fisher, BL; Hebert, PDN
  • A rapid bootstrap algorithm for the RAxML web servers
    Stamatakis, A; Hoover, P; Rougemont, J
  • The complete mitochondrial genome of the brown leg mite, Aleuroglyphus ovatus (Acari: Sarcoptiformes): evaluation of largest non-coding region and unique tRNAs
    Sun, E-T; Li, C-P; Nie, L-W; Jiang, Y-X
  • SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
    Vaidya, G; Lohman, DJ; Meier, R
  • Molecular systematics of Acarus siro s. lat., a complex of stored food pests
    Webster, LMI; Thomas, RH; McCormack, GP
  • Does the DNA barcoding gap exist? - a case study in blue butterflies (Lepidoptera: Lycaenidae)
    Wiemers, M; Fiedler, K
  • Speciation and diversity on tropical rocky shores: a global phylogeny of snails of the genus Echinolittorina
    Williams, ST; Reid, DG
  • Characterization of the complete mitochondrial genome of the storage mite pest Tyrophagus longior (Gervais) (Acari: Acaridae) and comparative mitogenomic analysis of four acarid mites
    Yang, B; Li, C
  • Identification of astigmatid mites using ITS2 and COI regions
    Yang, B; Cai, J; Cheng, X
  • Age and size at maturity in Tyrophagus curvipenis (Acari: Acaridae) when fed on three different diets
    Ye, S-S; Zhang, Z-Q
  • Integrative taxonomy, or iterative taxonomy?
    Yeates, DK; Seago, A; Nelson, L; Cameon, SL; Joseph, L; Trueman, JWH
  • Mites of greenhouses: identification, biology and control
    Zhang, ZQ
  • Bayesian species delimitation can be robust to guide-tree inference errors
    Zhang, C; Rannala, B; Yang, Z

You’re reading a free preview. Subscribe to read the entire article.

Try 2 weeks free now

DeepDyve is your
personal research library

It’s your single place to instantly
discover and read the research
that matters to you.

Enjoy affordable access to
over 18 million articles from more than
15,000 peer-reviewed journals.

All for just $49/month

Explore the DeepDyve Library

or browse the journals available

Search

Query the DeepDyve database, plus search all of PubMed and Google Scholar seamlessly

Organize

Save any article or search result from DeepDyve, PubMed, and Google Scholar... all in one place.

Access

Get unlimited, online access to over 18 million full-text articles from more than 15,000 scientific journals.

Your journals are on DeepDyve

Read from thousands of the leading scholarly journals from SpringerNature, Elsevier, Wiley-Blackwell, Oxford University Press and more.

All the latest content is available, no embargo periods.

See the journals in your area

DeepDyve

Freelancer

DeepDyve

Pro

Price

FREE

$49/month
$360/year

Save searches from
Google Scholar,
PubMed

Create lists to
organize your research

Export lists, citations

Read DeepDyve articles

Abstract access only

Unlimited access to over
18 million full-text articles

Print

20 pages / month

PDF Discount

20% off

Sign up
for free
Start 14 day
Free Trial