Access the full text.
Sign up today, get DeepDyve free for 14 days.
G. Frank, Shuichi Saito, E. Motley, Terukatsu Sasaki, M. Ohba, T. Kuroki, T. Inagami, S. Eguchi (2002)
Requirement of Ca2+and PKCδ for Janus Kinase 2 Activation by Angiotensin II: Involvement of PYK2Molecular Endocrinology, 16
D. Honys, D. Twell (2003)
Comparative Analysis of the Arabidopsis Pollen Transcriptome
Dingzhong Tang, R. Innes (2002)
Overexpression of a kinase-deficient form of the EDR1 gene enhances powdery mildew resistance and ethylene-induced senescence in Arabidopsis.The Plant journal : for cell and molecular biology, 32 6
François Roy, M. Therrien (2002)
MAP Kinase Module: The Ksr ConnectionCurrent Biology, 12
Shuqun Zhang, D. Klessig (2001)
MAPK cascades in plant defense signaling.Trends in plant science, 6 11
N. Saitou, M. Nei (1987)
The neighbor-joining method: a new method for reconstructing phylogenetic trees.Molecular biology and evolution, 4 4
D. Chinchilla, F. Merchan, M. Megias, A. Kondorosi, C. Sousa, M. Crespi (2003)
Ankyrin protein kinases: a novel type of plant kinase gene whose expression is induced by osmotic stress in alfalfaPlant Molecular Biology, 51
S. Hanks, A. Quinn (1991)
Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members.Methods in enzymology, 200
M. Okada, S. Nada, Y. Yamanashi, Tadashi Yamamoto, H. Nakagawa (1991)
CSK: a protein-tyrosine kinase involved in regulation of src family kinases.The Journal of biological chemistry, 266 36
M. Sippl, P. Lackner, F. Domingues, A. Prlić, Rainer Malik, A. Andreeva, M. Wiederstein (2001)
Assessment of the CASP4 fold recognition categoryProteins: Structure, 45
R. Innes (2001)
Mapping out the roles of MAP kinases in plant defense.Trends in plant science, 6 9
Ted-Chung Liu, Chang-jen Huang, Yu-Chuan Chu, Chih‐Chang Wei, Chun-Chieh Chou, M. Chou, C. Chou, Jaw‐Ji Yang (2000)
Cloning and expression of ZAK, a mixed lineage kinase-like protein containing a leucine-zipper and a sterile-alpha motif.Biochemical and biophysical research communications, 274 3
T. Hirayama, A. Oka (1992)
Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threoninePlant Molecular Biology, 20
(2000)
Analysis of the genome of the flowering plant Arabidopsis thalianaNature, 408
N. Ali, U. Halfter, N. Chua (1994)
Cloning and biochemical characterization of a plant protein kinase that phosphorylates serine, threonine, and tyrosine.The Journal of biological chemistry, 269 50
G. Muñoz, S. Marshall (1994)
Selective phosphoamino acid enrichment by organic solvent fractionation.BioTechniques, 17 6
M. Sippl (1993)
Recognition of errors in three‐dimensional structures of proteinsProteins: Structure, 17
C.A. Frye, D. Tang, R.W. Innes (2001)
Negative regulation of defense responses in plants by a conserved MAPKK kinaseProc. Natl. Acad. Sci. USA, 98
J. Tregear, S. Jouannic, N. Schwebel-Dugué, M. Kreis (1996)
An unusual protein kinase displaying characteristics of both the serine/threonine and tyrosine families is encoded by the Arabidopsis thaliana gene ATN1Plant Science, 117
C. Burge, S. Karlin (1997)
Prediction of complete gene structures in human genomic DNA.Journal of molecular biology, 268 1
S. Altschul, W. Gish, W. Miller, E. Myers, D. Lipman (1990)
Basic local alignment search tool.Journal of molecular biology, 215 3
K. Ichimura, T. Mizoguchi, K. Shinozaki (1997)
ATMRK1, an Arabidopsis protein kinase related to mammal mixed-lineage kinases and Raf protein kinasesPlant Science, 130
T. Murashige, F. Skoog (1962)
A revised medium for rapid growth and bio assays with tobacco tissue culturesPhysiologia Plantarum, 15
D. McCafferty, A. Craig, Y. Senis, P. Greer (2002)
Absence of Fer Protein-Tyrosine Kinase Exacerbates Leukocyte Recruitment in Response to Endotoxin1The Journal of Immunology, 168
Elisabetta Barizza, Fiorella Schiavo, M. Terzi, Francesco Filippini (1999)
Evidence suggesting protein tyrosine phosphorylation in plants depends on the developmental conditionsFEBS Letters, 447
P. Rudrabhatla, R. Rajasekharan (2003)
Mutational Analysis of Stress-responsive Peanut Dual Specificity Protein KinaseThe Journal of Biological Chemistry, 278
K. Yee, T. Bishop, C. Mather, Leonard Zon (1993)
Isolation of a novel receptor tyrosine kinase cDNA expressed by developing erythroid progenitors.Blood, 82 4
T. Hunter (1987)
A thousand and one protein kinasesCell, 50
C. Ponting, L. Aravind (1997)
PAS: a multifunctional domain family comes to lightCurrent Biology, 7
Shlomi Lazar, D. Galiani, N. Dekel (2002)
cAMP-Dependent PKA negatively regulates polyadenylation of c-mos mRNA in rat oocytes.Molecular endocrinology, 16 2
S. Weiner, P. Kollman, D. Case, U. Singh, C. Ghio, G. Alagona, S. Profeta, P. Weiner (1984)
A NEW FORCE FIELD FOR MOLECULAR MECHANICAL SIMULATION OF NUCLEIC ACIDS AND PROTEINSJournal of the American Chemical Society, 106
T. Yi, J. Bolen, J. Ihle (1991)
Hematopoietic cells express two forms of lyn kinase differing by 21 amino acids in the amino terminusMolecular and Cellular Biology, 11
Robert Finn, Jaina Mistry, John Tate, Penny Coggill, A. Heger, Joanne Pollington, O. Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik Sonnhammer, Sean Eddy, Alex Bateman (2007)
The Pfam protein families databaseNucleic Acids Research, 38
T. Asai, Guillaume Tena, J. Plotnikova, M. Willmann, W. Chiu, L. Gómez-Gómez, T. Boller, F. Ausubel, J. Sheen (2002)
MAP kinase signalling cascade in Arabidopsis innate immunityNature, 415
J. Cloutier, A. Veillette (1996)
Association of inhibitory tyrosine protein kinase p50csk with protein tyrosine phosphatase PEP in T cells and other hemopoietic cells.The EMBO Journal, 15
P. Rudrabhatla, R. Rajasekharan (2004)
Functional characterization of peanut serine/threonine/tyrosine protein kinase: molecular docking and inhibition kinetics with tyrosine kinase inhibitors.Biochemistry, 43 38
A. Shekhtman, R. Ghose, D. Wang, P. Cole, D. Cowburn (2001)
Novel mechanism of regulation of the non-receptor protein tyrosine kinase Csk: insights from NMR mapping studies and site-directed mutagenesis.Journal of molecular biology, 314 1
Gaochao Zhou, Z. Bao, J. Dixon (1995)
Components of a New Human Protein Kinase Signal Transduction Pathway (*)The Journal of Biological Chemistry, 270
A. Fordham-Skelton, M. Skipsey, I. Eveans, R. Edwards, J. Gatehouse (1999)
Higher plant tyrosine-specific protein phosphatases (PTPs) contain novel amino-terminal domains: expression during embryogenesisPlant Molecular Biology, 39
A. Yuryev, L. Wennogle (1998)
The RAF family: an expanding network of post-translational controls and protein-protein interactionsCell Research, 8
Glen Nuckolls, Nir Osherov, W. Loomis, James Spudich (1996)
The Dictyostelium dual-specificity kinase splA is essential for spore differentiation.Development, 122 10
P. Rudrabhatla, R. Rajasekharan (2003)
Mutational analysis of stress-responsive peanut dual specificity kinase: identification of tyrosine residues involved in protein kinase activityJ. Biol. Chem., 278
Qiang Xu, Hui-Hua Fu, Rajeev Gupta, S. Luan (1998)
Molecular Characterization of a Tyrosine-Specific Protein Phosphatase Encoded by a Stress-Responsive Gene in ArabidopsisPlant Cell, 10
R. Lindberg, A. Quinn, T. Hunter (1992)
Dual-specificity protein kinases: will any hydroxyl do?Trends in biochemical sciences, 17 3
J. Kyte, R. Doolittle (1982)
A simple method for displaying the hydropathic character of a protein.Journal of molecular biology, 157 1
R. Page (1996)
TreeView: an application to display phylogenetic trees on personal computersComputer applications in the biosciences : CABIOS, 12 4
I. Gotoh, Makoto Adachi, E. Nishida (2001)
Identification and Characterization of a Novel MAP Kinase Kinase Kinase, MLTK*The Journal of Biological Chemistry, 276
G. Frank, Shuichi Saito, E. Motley, Terukatsu Sasaki, M. Ohba, T. Kuroki, T. Inagami, S. Eguchi (2002)
Requirement of Ca(2+) and PKCdelta for Janus kinase 2 activation by angiotensin II: involvement of PYK2.Molecular endocrinology, 16 2
M. Lamers, A. Antson, R. Hubbard, Richard Scott, David Williams (1999)
Structure of the protein tyrosine kinase domain of C-terminal Src kinase (CSK) in complex with staurosporine.Journal of molecular biology, 285 2
B. Stanger, P. Leder, Tae Lee, E. Kim, B. Seed (1995)
RIP: A novel protein containing a death domain that interacts with Fas/APO-1 (CD95) in yeast and causes cell deathCell, 81
Andrew Chan, King Hw, Deakin Ea, Tempest Pr, J. Hilkens, Kroezen, Dylan Edwards, Alan Wills, P. Brookes, Colin Cooper (1988)
Characterization of the mouse met proto-oncogene.Oncogene, 2 6
R. Yang, David Foster, D. Garbers, H. Fülle (1995)
Two membrane forms of guanylyl cyclase found in the eye.Proceedings of the National Academy of Sciences of the United States of America, 92
John Tan, James Spudich (1990)
Developmentally regulated protein-tyrosine kinase genes in Dictyostelium discoideumMolecular and Cellular Biology, 10
U. Holtrich, A. Bräuninger, K. Strebhardt, H. Rübsamen-Waigmann (1991)
Two additional protein-tyrosine kinases expressed in human lung: fourth member of the fibroblast growth factor receptor family and an intracellular protein-tyrosine kinase.Proceedings of the National Academy of Sciences of the United States of America, 88 23
The Initiative (2000)
Analysis of the genome sequence of the flowering plant Arabidopsis thalianaNature, 408
J. Felsenstein (1996)
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods.Methods in enzymology, 266
A. Lukashin, M. Borodovsky (1998)
GeneMark.hmm: new solutions for gene finding.Nucleic acids research, 26 4
P. Rudrabhatla, R. Rajasekharan (2004)
Functional characterization of peanut STY kinase Molecular docking and inhibition kinetics with tyrosine kinase inhibitorsBiochemistry, 43
Rajeev Gupta, Yafan Huang, J. Kieber, Sheng Luan, Sheng Luan (1998)
Identification of a dual-specificity protein phosphatase that inactivates a MAP kinase from Arabidopsis.The Plant journal : for cell and molecular biology, 16 5
S. Hanks, A. Quinn, T. Hunter (1988)
The protein kinase family: conserved features and deduced phylogeny of the catalytic domains.Science, 241 4861
T. Murashige, F. Skoog (1962)
A revised medium for rapid growth and bioassays with tobacco tissue culturesPlant Physiol., 15
J. Thompson, D. Higgins, T. Gibson (1994)
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.Nucleic acids research, 22 22
Xin-Hua Feng, Yan Zhao, P. Bottino, Shain Kung (1993)
Cloning and characterization of a novel member of protein kinase family from soybean.Biochimica et biophysica acta, 1172 1-2
A. Katzen, D. Montarras, J. Jackson, R. Paulson, T. Kornberg, J. Bishop (1991)
A gene related to the proto-oncogene fps/fes is expressed at diverse times during the life cycle of Drosophila melanogasterMolecular and Cellular Biology, 11
S. Altschul, Thomas Madden, A. Schäffer, Jinghui Zhang, Zheng Zhang, W. Miller, D. Lipman (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Nucleic acids research, 25 17
T. Mizoguchi, K. Irie, T. Hirayama, N. Hayashida, K. Yamaguchi-Shinozaki, Kunihiro Matsumoto, K. Shinozaki (1996)
A gene encoding a mitogen-activated protein kinase kinase kinase is induced simultaneously with genes for a mitogen-activated protein kinase and an S6 ribosomal protein kinase by touch, cold, and water stress in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America, 93 2
Sudhir Kumar, K. Tamura, I. Jakobsen, M. Nei (2001)
MEGA2: molecular evolutionary genetics analysis softwareBioinformatics, 17 12
P. Rudrabhatla, R. Rajasekharan (2002)
Developmentally Regulated Dual-Specificity Kinase from Peanut That Is Induced by Abiotic Stresses1Plant Physiology, 130
C. Bourassa, A. Chapdelaine, K. Roberts, S. Chevalier (1988)
Enhancement of the detection of alkali-resistant phosphoproteins in polyacrylamide gels.Analytical biochemistry, 169 2
J. Goddard, J. Weiland, M. Capecchi (1986)
Isolation and characterization of Caenorhabditis elegans DNA sequences homologous to the v-abl oncogene.Proceedings of the National Academy of Sciences of the United States of America, 83 7
L. Aravind, E. Koonin (1999)
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches.Journal of molecular biology, 287 5
J. Ryals, Kay Lawton, Terrence Delaney, L. Friedrich, H. Kessmann, Urs Neuenschwander, Scott Uknes, B. Vernooij, K. Weymann (1995)
Signal transduction in systemic acquired resistance.Proceedings of the National Academy of Sciences of the United States of America, 92 10
S. Noiman, Y. Shaul (1995)
Detection of histidine‐phospho‐proteins in animal tissuesFEBS Letters, 364
P. Rudrabhatla, R. Rajasekharan (2002)
Developmentally regulated dual-specificity kinase that is induced by abiotic stressesPlant Physiol., 130
A. Shekhtman, R. Ghose, D. Wang, P.A. Cole, D. Cowburn (2001)
Novel mechanism of regulation of the non-receptor tyrosine kinase Csk: insights from NMR mapping studies and site-directed mutagenesisJ Mod Biol, 314
Takamune Takahashi, T. Shirasaw (1994)
Molecular cloning of rat JAK3, a novel member of the JAK family of protein tyrosine kinasesFEBS Letters, 342
V. Bennett, Lihsia Chen (2001)
Ankyrins and cellular targeting of diverse membrane proteins to physiological sites.Current opinion in cell biology, 13 1
Hao-jen Huang, Yu-mei Lin, Dinq-Ding Huang, Takuya Takahashi, M. Sugiyama (2003)
Protein tyrosine phosphorylation during phytohormone-stimulated cell proliferation in Arabidopsis Hypocotyls.Plant & cell physiology, 44 7
Y. Yarden, J. Escobedo, W. Kuang, T. Yang-Feng, T. Daniel, P. Tremble, E. Chen, M. Ando, R. Harkins, U. Francke, V. Fried, A. Ullrich, L. Williams (1986)
Structure of the receptor for platelet-derived growth factor helps define a family of closely related growth factor receptorsNature, 323
R. Binari, Norbert Perrimon (1994)
Stripe-specific regulation of pair-rule genes by hopscotch, a putative Jak family tyrosine kinase in Drosophila.Genes & development, 8 3
H. Schoof, P. Zaccaria, H. Gundlach, K. Lemcke, S. Rudd, G. Kolesov, Roland Arnold, H. Mewes, K. Mayer (2002)
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genomeNucleic acids research, 30 1
S. Hanks (1987)
Homology probing: identification of cDNA clones encoding members of the protein-serine kinase family.Proceedings of the National Academy of Sciences of the United States of America, 84 2
Renu Garg, P. Oliver, N. Maeda, K. Pandey (2002)
Genomic structure, organization, and promoter region analysis of murine guanylyl cyclase/atrial natriuretic peptide receptor-A gene.Gene, 291 1-2
M. Salanoubat, K. Lemcke, M. Rieger, W. Ansorge, M. Unseld, B. Fartmann, G. Valle, H. Blöcker, M. Perez-Alonso, B. Obermaier, M. Delseny, M. Boutry, L. Grivell, R. Mache, P. Puigdomènech, V. Simone, N. Choisne, F. Artiguenave, C. Robert, P. Brottier, P. Wincker, L. Cattolico, J. Weissenbach, W. Saurin, F. Quétier, M. Schäfer, S. Müller-Auer, C. Gabel, M. Fuchs, V. Beneš, E. Wurmbach, H. Drzonek, H. Erfle, N. Jordan, S. Bangert, R. Wiedelmann, H. Kranz, H. Voss, R. Holland, P. Brandt, G. Nyakatura, A. Vezzi, M. D'Angelo, A. Pallavicini, S. Toppo, B. Simionati, A. Conrad, K. Hornischer, G. Kauer, T. Löhnert, G. Nordsiek, J. Reichelt, M. Scharfe, O. Schön, M. Bargues, J. Terol, Joan-Josep Climent, P. Navarro, C. Collado, A. Pérez-Pérez, B. Ottenwälder, D. Duchemin, R. Cooke, M. Laudie, C. Berger-Llauro, B. Purnelle, D. Masuy, M. Haan, A. Maarse, J. Alcaraz, A. Cottet, E. Casacuberta, A. Monfort, A. Argiriou, M. Flores, R. Liguori, D. Vitale, G. Mannhaupt, D. Haase, H. Schoof, S. Rudd, P. Zaccaria, H. Mewes, K. Mayer, S. Kaul, C. Town, H. Koo, L. Tallon, J. Jenkins, T. Rooney, M. Rizzo, A. Walts, T. Utterback, C. Fujii, T. Shea, T. Creasy, B. Haas, R. Maiti, D. Wu, J. Peterson, S. Aken, G. Pai, J. Militscher, P. Sellers, J. Gill, T. Feldblyum, D. Preuss, X. Lin, W. Nierman, S. Salzberg, O. White, J. Venter, C. Fraser, T. Kaneko, Y. Nakamura, S. Sato, T. Kato, E. Asamizu, S. Sasamoto, T. Kimura, K. Idesawa, K. Kawashima, Y. Kishida, C. Kiyokawa, M. Kohara, M. Matsumoto, A. Matsuno, A. Muraki, S. Nakayama, N. Nakazaki, S. Shinpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda, S. Tabata (2000)
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.Nature, 408 6814
Lisa Rider, Nina Raben, Larry Miller, Carole Jelsema (1994)
The cDNAs encoding two forms of the LYN protein tyrosine kinase are expressed in rat mast cells and human myeloid cells.Gene, 138 1-2
A. Shevchenko, O. Jensen, A. Podtelejnikov, F. Sagliocco, M. Wilm, O. Vorm, P. Mortensen, A. Shevchenko, H. Boucherie, M. Mann (1996)
Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels.Proceedings of the National Academy of Sciences of the United States of America, 93 25
William Morgan, I. Greenwald (1993)
Two novel transmembrane protein tyrosine kinases expressed during Caenorhabditis elegans hypodermal developmentMolecular and Cellular Biology, 13
C. Frye, Dingzhong Tang, R. Innes (2001)
From the Cover: Negative regulation of defense responses in plants by a conserved MAPKK kinaseProceedings of the National Academy of Sciences of the United States of America, 98
Philip Zimmermann, Matthias Hirsch-Hoffmann, L. Hennig, W. Gruissem (2004)
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w]Plant Physiology, 136
A. Carpi, G. Maira, M. Vedovato, V. Rossi, T. Naccari, M. Floriduz, M. Terzi, F. Filippini (2002)
Comparative proteome bioinformatics: Identification of a whole complement of putative protein tyrosine kinases in the model flowering plant Arabidopsis thalianaPROTEOMICS, 2
David Morgan, Hendrik Bondt (1994)
Protein kinase regulation: insights from crystal structure analysis.Current opinion in cell biology, 6 2
N. Guex, M. Peitsch (1997)
SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modelingELECTROPHORESIS, 18
R. Sayle, E. Milner-White (1995)
RASMOL: biomolecular graphics for all.Trends in biochemical sciences, 20 9
A. Wilks, R. Kurban (1988)
Isolation and structural analysis of murine c-fes cDNA clones.Oncogene, 3 3
M. Gribskov, Fariba Fana, J. Harper, D. Hope, A. Harmon, Douglas Smith, F. Tax, Guangfa Zhang (2001)
PlantsP: a functional genomics database for plant phosphorylationNucleic acids research, 29 1
Protein tyrosine phosphorylation plays an important role in cell growth, development and oncogenesis. No classical protein tyrosine kinase has hitherto been cloned from plants. Does protein tyrosine kinase exist in plants? To address this, we have performed a genomic survey of protein tyrosine kinase motifs in plants using the delineated tyrosine phosphorylation motifs from the animal system. The Arabidopsis thaliana genome encodes 57 different protein kinases that have tyrosine kinase motifs. Animal non-receptor tyrosine kinases, SRC, ABL, LYN, FES, SEK, KIN and RAS have structural relationship with putative plant tyrosine kinases. In an extended analysis, animal receptor and non-receptor kinases, Raf and Ras kinases, mixed lineage kinases and plant serine/threonine/tyrosine (STY) protein kinases, form a well-supported group sharing a common origin within the superfamily of STY kinases. We report that plants lack bona fide tyrosine kinases, which raise an intriguing possibility that tyrosine phosphorylation is carried out by dual-specificity STY protein kinases in plants. The distribution pattern of STY protein kinase families on Arabidopsis chromosomes indicates that this gene family is partly a consequence of duplication and reshuffling of the Arabidopsis genome and of the generation of tandem repeats. Genome-wide analysis is supported by the functional expression and characterization of At2g24360 and phosphoproteomics of Arabidopsis. Evidence for tyrosine phosphorylated proteins is provided by alkaline hydrolysis, anti-phosphotyrosine immunoblotting, phosphoamino acid analysis and peptide mass fingerprinting. These results report the first comprehensive survey of genome-wide and tyrosine phosphoproteome analysis of plant STY protein kinases.
Plant Molecular Biology – Springer Journals
Published: Oct 17, 2005
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.