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Elizabeth Chare, Edward Holmes (2006)
A phylogenetic survey of recombination frequency in plant RNA virusesArchives of Virology, 151
E. Bermingham, Craig Moritz (1998)
Comparative phylogeography: concepts and applicationsMolecular Ecology, 7
M. Roossinck (2008)
Plant virus evolution
E. Walt, E. Rybicki, A. Varsani, J. Polston, Rosalind Billharz, L. Donaldson, A. Monjane, D. Martin (2009)
Rapid host adaptation by extensive recombinationThe Journal of General Virology, 90
Adrian Valli, J. López-Moya, J. García (2007)
Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae.The Journal of general virology, 88 Pt 3
P. Pamilo, Nestor Bianchit (1993)
Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.Molecular biology and evolution, 10 2
M. Roossinck (1997)
Mechanisms of plant virus evolution.Annual review of phytopathology, 35
J. Drake, J. Holland (1999)
Mutation rates among RNA viruses.Proceedings of the National Academy of Sciences of the United States of America, 96 24
Jonathan Oliver, Emmanuelle Vigne, Emmanuelle Vigne, Marc Fuchs (2010)
Genetic structure and molecular variability of Grapevine fanleaf virus populations.Virus research, 152 1-2
F. Bai, Qu Zc, J. Yan, Hongwei Zhang, J. Xu, Ye Mm, Wu Hl, Liao Xg, Shen Dl (2001)
Identification of rice black streaked dwarf virus in different cereal crops with dwarfing symptoms in China.Acta virologica, 45 5-6
Z. Hai (2011)
Population dynamics and migration characteristics of the small brown planthopper in spring in Jining,Shandong ProvinceChinese Bulletin of Entomology
Wen-Hsiung Li (2006)
Unbiased estimation of the rates of synonymous and nonsynonymous substitutionJournal of Molecular Evolution, 36
J. Rozas (2009)
DNA sequence polymorphism analysis using DnaSP.Methods in molecular biology, 537
Chen Jia, Zhu Qinqin, Yu Congyang, Sun Zuowen, Liu Xiangdong, Z. Tao, Fan Zaifeng (2008)
Molecular characterization of Rice black-streaked dwarf virus isolates causing maize rough dwarf disease in Shandong., 38
K. Tomimura, A. Gibbs, C. Jenner, J. Walsh, K. Ohshima (2003)
The phylogeny of Turnip mosaic virus; comparisons of 38 genomic sequences reveal a Eurasian origin and a recent ‘emergence’ in east AsiaMolecular Ecology, 12
(2013)
Optimization of RT-PCR detection system for rice black-streaked dwarf virus and detection of its natural hosts
Huijun Liu, Chunhong Wei, Yongwang Zhong, Yi Li (2007)
Rice black-streaked dwarf virus outer capsid protein P10 has self-interactions and forms oligomeric complexes in solution.Virus research, 127 1
E. Shikata, Yoshichika Kitagawa (1977)
Rice black-streaked dwarf virus: its properties, morphology and intracellular localization.Virology, 77 2
Yongqiang Li, Mengao Jia, Zuodong Jiang, Tao Zhou, Z. Fan (2012)
Molecular variation and recombination in RNA segment 10 of rice black-streaked dwarf virus isolated from China during 2007-2010Archives of Virology, 157
Zhao-hui Wang, S. Fang, Jia-ling Xu, Li-ying Sun, Da-wei Li, Jialin Yu (2003)
Sequence Analysis of the Complete Genome of Rice Black-Streaked Dwarf Virus Isolated from Maize with Rough Dwarf DiseaseVirus Genes, 27
Yunxin Fu, Wenhao Li (1993)
Statistical tests of neutrality of mutations.Genetics, 133 3
E. Simon-Lorière, E. Holmes (2011)
Why do RNA viruses recombine?Nature Reviews. Microbiology, 9
9990) 195.0385 (1.0000) 0.1225 (1.0000) -3.50 0.0833 Maize-Rice 3
Masamichi Isogai, Ichiro Uyeda, Bong-choon Lee (1998)
Detection and assignment of proteins encoded by rice black streaked dwarf fijivirus S7, S8, S9 and S10.The Journal of general virology, 79 ( Pt 6)
Han-Xin Lin, L. Rubio, A. Smythe, B. Falk (2004)
Molecular Population Genetics of Cucumber Mosaic Virus in California: Evidence for Founder Effects and ReassortmentJournal of Virology, 78
Shandong 3.8663 (1.0000) 3968.4839 (1.0000) 0.0106 (1.0000) -15.75 0
Xiao Yin, Fei-fei Xu, F. Zheng, Xiang-Dong Li, Bao-shen Liu, Chunqing Zhang (2011)
Molecular characterization of segments S7 to S10 of a southern rice black-streaked dwarf virus isolate from maize in northern ChinaVirologica Sinica, 26
Y. Tomitaka, K. Ohshima (2006)
A phylogeographical study of the Turnip mosaic virus population in East Asia reveals an ‘emergent’ lineage in JapanMolecular Ecology, 15
D. Stenger, M. Sisterson, R. French (2010)
Population genetics of Homalodisca vitripennis reovirus validates timing and limited introduction to California of its invasive insect host, the glassy-winged sharpshooter.Virology, 407 1
E. Holmes (2009)
The Evolutionary Genetics of Emerging VirusesAnnual Review of Ecology, Evolution, and Systematics, 40
O. Traoré, F. Sorho, A. Pinel, Z. Abubakar, O. Banwo, Jean Maley, E. Hébrard, Stephan Winter, Y. Séré, G. Konaté, Denis Fargette (2005)
Processes of diversification and dispersion of Rice yellow mottle virus inferred from large‐scale and high‐resolution phylogeographical studiesMolecular Ecology, 14
T. Wei, Hui Wang, Han-Xin Lin, Zu-jian Wu, Q. Lin, L. Xie (2003)
[Sequence analysis of RNA3 of Rice stripe virus isolates found in China: evidence for reassortment in Tenuivirus].Sheng wu hua xue yu sheng wu wu li xue bao Acta biochimica et biophysica Sinica, 35 1
I. Uyeda, Y. Ando, K. Murao, I. Kimura (1995)
High resolution genome typing and genomic reassortment events of rice dwarf Phytoreovirus.Virology, 212 2
A. Fraile, J. Alonso-Prados, M. Aranda, J. Bernal, J. Malpica, F. García-Arenal (1997)
Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virusJournal of Virology, 71
K. Tamura, J. Dudley, M. Nei, Sudhir Kumar (2007)
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.Molecular biology and evolution, 24 8
R. Hudson (2000)
A new statistic for detecting genetic differentiation.Genetics, 155 4
R. Hudson, D. Boos, N. Kaplan (1992)
A statistical test for detecting geographic subdivision.Molecular biology and evolution, 9 1
Susana Martín, A. Sambade, L. Rubio, M. Vives, Patricia Moya, J. Guerri, S. Elena, P. Moreno (2009)
Contribution of recombination and selection to molecular evolution of Citrus tristeza virus.The Journal of general virology, 90 Pt 6
M. Tsompana, J. Abad, M. Purugganan, J. Moyer (2004)
The molecular population genetics of the Tomato spotted wilt virus (TSWV) genomeMolecular Ecology, 14
D. Martin, P. Lemey, M. Lott, V. Moulton, D. Posada, P. Lefeuvre (2010)
RDP3: a flexible and fast computer program for analyzing recombinationBioinformatics, 26
Acta Phytopathol Sin
Hengmu Zhang, Jianping Chen, J. Lei, M. Adams (2001)
Sequence Analysis Shows that a Dwarfing Disease on Rice, Wheat and Maize in China is Caused by Rice Black-streaked Dwarf VirusEuropean Journal of Plant Pathology, 107
M. Glasa, L. Palkovics, P. Komínek, G. Labonne, S. Pittnerová, O. Kúdela, T. Candresse, Z. Šubr (2004)
Geographically and temporally distant natural recombinant isolates of Plum pox virus (PPV) are genetically very similar and form a unique PPV subgroup.The Journal of general virology, 85 Pt 9
J. Thompson, D. Higgins, T. Gibson (1994)
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.Nucleic acids research, 22 22
K. Ohshima, Y. Tomitaka, J. Wood, Yoshiteru Minematsu, Hiromi Kajiyama, K. Tomimura, A. Gibbs (2007)
Patterns of recombination in turnip mosaic virus genomic sequences indicate hotspots of recombination.The Journal of general virology, 88 Pt 1
H. Zhang, J. Chen, M. Adams (2001)
Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf virus from China provides the complete genomeArchives of Virology, 146
Shandong-Jiangsu 3.9279 (0.0910) 2269.1521 (0.1730) 0.6458 (0.0330)* 27
S Wright (1951)
The genetical structure of populationsAnn Eugenics, 15
F. García-Arenal, A. Fraile, J. Malpica (2003)
Variation and evolution of plant virus populationsInternational Microbiology, 6
T. Wei, Jin-Guang Yang, F. Liao, Fangluan Gao, Lian-ming Lu, Xiao-Ting Zhang, Fan Li, Zu-jian Wu, Q. Lin, L. Xie, Han-Xin Lin (2009)
Genetic diversity and population structure of rice stripe virus in China.The Journal of general virology, 90 Pt 4
(1984)
Researches on rice black-streaked dwarf disease
Cheng-Ling Zhang, R. Gao, Jie Wang, Guang-min Zhang, Xiang-Dong Li, Huan Liu (2011)
Molecular variability of Tobacco vein banding mosaic virus populations.Virus research, 158 1-2
P. Nagy (2008)
Recombination in Plant RNA Viruses
Huijun Liu, Chunhong Wei, Yongwang Zhong, Yi Li (2007)
Rice black‐streaked dwarf virus minor core protein P8 is a nuclear dimeric protein and represses transcription in tobacco protoplastsFEBS Letters, 581
S. Wright (1950)
Genetical Structure of PopulationsBritish Medical Journal, 2
J. Bonnet, A. Fraile, S. Sacristán, J. Malpica, F. García-Arenal (2005)
Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus.Virology, 332 1
TY Wei, H Wang, HX Lin, ZJ Wu, QY Lin, LH Xie (2003)
Sequence analysis of RNA3 of Rice stripe virus isolates found in China: evidence for reassortment in Tenuivirus Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai)Acta Bioch Bioph Sin, 35
HY Zhang, YG Diao, HB Yang, Y Zhao, XX Zhang, BP Zhai (2011)
Population dynamics and migration characteristics of the small brown planthopper in spring in Jining, Shandong ProvinceChin J Appl Entomol, 48
Rice black-streaked dwarf virus (RBSDV) is a double-stranded RNA (dsRNA) virus belonging to the genus Fijivirus in the family Reoviridae . The genome of RBSDV consists of ten dsRNA segments. Although RBSDV has caused significant economic losses to rice and maize production in the past few years in China, its molecular diversity and evolution remain largely unknown. To elucidate the factor(s) underlying the evolution of RBSDV, we determined segment 8 (S8; carrying ORF8 encoding the minor core capsid protein) sequences of 101 samples and segment 10 (S10; carrying ORF10 encoding the major capsid protein) sequences of 103 samples. The results show that both ORF8 and ORF10 are under negative selection. The S8 of three isolates and S10 of two isolates are recombinants. The RBSDV population in China can be classified into three groups according to S8 sequences or into two groups according to S10 sequences, irrespective of host or geographical origin. Of the RBSDV isolates with both S8 and S10 sequences available, 17 are between-group reassortants and 30 are between-subgroup reassortants. The RBSDV subpopulations from different geographical regions and hosts show frequent gene flow within or between subpopulations. The RBSDV population from maize is in a state of expansion. In this study, no new emergent population was detected. Taken together, the results indicate that, in addition to recombination and negative selection, reassortment and gene flow are important factors that drive evolution of RBSDV in China.
Archives of Virology – Springer Journals
Published: Dec 1, 2013
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