Genetic diversity of a hitchhiker and prized food source in the Anthropocene: the Asian green mussel Perna viridis (Mollusca, Mytilidae)

Genetic diversity of a hitchhiker and prized food source in the Anthropocene: the Asian green... Insight into a species’ native and introduced range is essential in understanding the invasion process. Genetic diversity, propagule pressure and environmental conditions all have been recognised as playing a determinant role in invasion success. Here, we aimed to investigate the genetic diversity and population genetic structure (using the COI mtDNA gene region and 22 nDNA microsatellite markers) of the Asian green mussel Perna viridis within its potential native range in Asia and at introduced locations in the USA and the Caribbean. We also analyse genetic data from vessel intercepts and an incursion. By doing so, we aimed to identify genetic signatures that could allow to track vessel samples to their source and provide further insight into potential high-risk invasive populations or areas. Three top hierarchical clusters were identified using the individual-based Bayesian clustering method in STRUCTURE, corresponding to populations in three world regions: (1) USA and Caribbean, (2) India and (3) Southeast Asia. Within Southeast Asia, additional analysis indicate a shallow genetic differentiation of three subgroups consisting of (3a) Thailand, (3b) Taiwan and Hong-Kong, and (3c) a cluster of Singapore–Indonesia samples. Overall, the population structure found in this study suggests that the markers used could be useful in identifying source populations, particularly between the three mains world regions. Most surprisingly however, this study shows that the genetic diversity of samples collected from vessel intercepts and incursions did not differ significantly from established populations in Southeast Asia. In this region, in addition to the high vessel connectivity and number of P. viridis transported, all sampled populations are likely to pose a comparable risk in terms of genetic diversity. The present work represents the most comprehensive population genetic study of P. viridis, and the first to address the potential genetic introduction risk posed by populations of this species. The information and genetic markers in this study constitute a valuable addition to the tools already used to infer on potential high-risk source populations of P. viridis. They should therefore prove useful for biosecurity surveillance and management actions directed at this species. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Biological Invasions Springer Journals

Genetic diversity of a hitchhiker and prized food source in the Anthropocene: the Asian green mussel Perna viridis (Mollusca, Mytilidae)

22 pages
Read Article

Loading next page...
 
/lp/springer_journal/genetic-diversity-of-a-hitchhiker-and-prized-food-source-in-the-O9VY3UYk8c
Publisher
Springer Journals
Copyright
Copyright © 2018 by Springer International Publishing AG, part of Springer Nature
Subject
Life Sciences; Ecology; Freshwater & Marine Ecology; Plant Sciences; Developmental Biology
ISSN
1387-3547
eISSN
1573-1464
DOI
10.1007/s10530-018-1659-6
Publisher site
See Article on Publisher Site

Abstract

Insight into a species’ native and introduced range is essential in understanding the invasion process. Genetic diversity, propagule pressure and environmental conditions all have been recognised as playing a determinant role in invasion success. Here, we aimed to investigate the genetic diversity and population genetic structure (using the COI mtDNA gene region and 22 nDNA microsatellite markers) of the Asian green mussel Perna viridis within its potential native range in Asia and at introduced locations in the USA and the Caribbean. We also analyse genetic data from vessel intercepts and an incursion. By doing so, we aimed to identify genetic signatures that could allow to track vessel samples to their source and provide further insight into potential high-risk invasive populations or areas. Three top hierarchical clusters were identified using the individual-based Bayesian clustering method in STRUCTURE, corresponding to populations in three world regions: (1) USA and Caribbean, (2) India and (3) Southeast Asia. Within Southeast Asia, additional analysis indicate a shallow genetic differentiation of three subgroups consisting of (3a) Thailand, (3b) Taiwan and Hong-Kong, and (3c) a cluster of Singapore–Indonesia samples. Overall, the population structure found in this study suggests that the markers used could be useful in identifying source populations, particularly between the three mains world regions. Most surprisingly however, this study shows that the genetic diversity of samples collected from vessel intercepts and incursions did not differ significantly from established populations in Southeast Asia. In this region, in addition to the high vessel connectivity and number of P. viridis transported, all sampled populations are likely to pose a comparable risk in terms of genetic diversity. The present work represents the most comprehensive population genetic study of P. viridis, and the first to address the potential genetic introduction risk posed by populations of this species. The information and genetic markers in this study constitute a valuable addition to the tools already used to infer on potential high-risk source populations of P. viridis. They should therefore prove useful for biosecurity surveillance and management actions directed at this species.

Journal

Biological Invasions – Springer Journals

Published: Jan 17, 2018

References

  • A hub and spoke network model to analyse the secondary dispersal of introduced marine species in Indonesia
    Azmi, F; Hewitt, CL; Campbell, ML
  • Habitat and ecology of green mussels, Perna viridis, in Florida
    Baker, P; Benson, A
  • Range and dispersal of a tropical marine invader, the Asian green mussel, Perna viridis, in subtropical waters of the southeastern United States
    Baker, P; Fajans, JS; Arnold, WS; Ingrao, DA; Marelli, DC; Baker, SM
  • Establishment of the green mussel, Perna viridis (Linnaeus, 1758) (Mollusca: Mytilidae) on the west coast of Florida
    Benson, AJ; Marelli, DC; Frischer, ME; Danforth, JM; Williams, JD
  • What we still don’t know about invasion genetics
    Bock, DG; Caseys, C; Cousens, RD; Hahn, MA; Heredia, SM; Hübner, S; Turner, KG; Whitney, KD; Rieseberg, LH
  • Characterization of eight novel microsatellite markers in the green-lipped mussel Perna viridis (Mytilidae)
    Cao, YY; Li, ZB; Li, QH; Chen, XJ; Chen, L; Dai, G
  • TCS: a computer program to estimate gene genealogies
    Clement, M; Posada, D; Crandall, KA
  • Bayesian analysis of genetic differentiation between populations
    Corander, J; Waldmann, P; Sillanpaa, MJ
  • SMOGD: software for the measurement of genetic diversity
    Crawford, NG
  • Genetic patterns across multiple introductions of the globally invasive crab genus Carcinus
    Darling, JA; Bagley, MJ; Roman, J; Tepolt, CK; Geller, JB
  • Intracoastal shipping drives patterns of regional population expansion by an invasive marine invertebrate
    Darling, JA; Herborg, L; Davidson, IC
  • Development of sensitive and specific molecular tools for the efficient detection and discrimination of potentially invasive mussel species of the genus Perna
    Dias, PJ; Fotedar, S; Gardner, JPA; Snow, M
  • Establishment of a taxonomic and molecular reference collection to support the identification of species regulated by the Western Australia prevention list for introduced marine pests
    Dias, PJ; Fotedar, S; Munoz, J; Hewitt, MJ; Lukehurst, S; Hourston, M; Wellington, C; Duggan, R; Bridgwood, S; Massam, M; Aitken, V; Lestang, P; McKirdy, S; Willan, R; Kirkendale, L; Giannetta, J; Corsini-Foka, M; Pothoven, S; Gower, F; Viard, F; Buschbaum, C; Scarcella, G; Strafella, P; Bishop, MJ; Sullivan, T; Buttino, I; Madduppa, H; Huhn, M; Zabin, CJ; Bacela-Spychalska, K; Wójcik-Fudalewska, D; Markert, A; Maximov, A; Kautsky, L; Jaspers, C; Kotta, J; Pärnoja, M; Robledo, D; Tsiamis, K; Küpper, FC; Žuljević, A; McDonald, JI; Snow, M
  • Mitochondrial DNA (Cytochrome c oxidase I) sequencing of Indian marine mussels
    Divya, PR; Gopalakrishnan, A; Lijo, J; Thomas, PC; Lakra, WS
  • A molecular approach to reveal the genetic identity of parrot mussel and other sympatric mussel species distributed along the Kerala coast
    Divya, PR; Thomas, PC; Mohindra, V; Lal, KK; Singh, RK
  • Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions
    Dlugosch, KM; Parker, IM
  • Reconstructing routes of invasion using genetic data: why, how and so what?
    Estoup, A; Guillemaud, T
  • Detecting the number of clusters of individuals using the software structure: a simulation study
    Evanno, G; Regnaut, S; Goudet, J
  • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    Falush, D; Stephens, M; Pritchard, JK
  • The biology of small, introduced populations, with special reference to biological control
    Fauvergue, X; Vercken, E; Malausa, T; Hufbauer, RA
  • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    Fu, Y-X
  • Combined evidence indicates that Perna indica Kuriakose and Nair 1976 is Perna perna (Linnaeus, 1758) from the Oman region introduced into southern India more than 100 years ago
    Gardner, PA; Patterson, J; George, S; Patterson, EJK
  • Genetic perspectives on marine biological invasions
    Geller, JB; Darling, JA; Carlton, JT
  • Calculations of population differentiation based on GST and D: forget GST but not all of statistics!
    Gerlach, G; Jueterbock, A; Kraemer, P; Deppermann, J; Harmand, P
  • Genetic diversity in introduced golden mussel populations corresponds to vector activity
    Ghabooli, S; Zhan, A; Sardiña, P; Paolucci, E; Sylvester, F; Perepelizin, PV; Briski, E; Cristescu, ME; MacIsaac, HJ
  • Population genetics of introduced and native populations of the green mussel, Perna viridis: determining patterns of introduction
    Gilg, MR; Johnson, EG; Gobin, J; Bright, BM; Ortolaza, AI
  • FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Updated from Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics
    Goudet, J
  • Systematics of mollusca in Japan: Bivalvia and Scaphopoda
    Habe, T
  • Perna mussels introduced into Ise and Mikawa Bays, Central Japan
    Hanyu, K; Sekiguchi, H
  • Larval and post-larval shell morphology of the green mussel Perna viridis (Linnaeus, 1758) (Bivalvia:Mytilidae)
    Hanyu, K; Toyama, K; Kimura, T; Sekiguchi, H
  • The genetic structure of ancient human populations
    Harpending, HC; Sherry, ST; Stoneking, M; Rogers, AR
  • Sensitivity and cost considerations for the detection and eradication of marine pests in ports
    Hayes, KR; Cannon, R; Neil, K; Inglis, G
  • Genetics of marine bioinvasions
    Holland, BS
  • A ferry line facilitates dispersal: Asian green mussels Perna viridis (Linnaeus, 1758) detected in eastern Indonesia
    Huhn, M; Zamane, NP; Lenz, M
  • Tolerance to hypoxia in Asian green mussels, Perna viridis, collected from a ship hull in the non-native range in eastern Indonesia
    Huhn, M; Zamani, N; Lenz, M
  • Another introduced marine mollusk in the Gulf of Mexico: the IndoPacific green mussel, Perna viridis, in Tampa Bay, Florida
    Ingrao, DA; Mikkelson, PM; Hicks, DW
  • The K = 2 conundrum
    Janes, JK; Miller, JM; Dupuis, JR; Malenfant, RM; Gorrell, JC; Cullingham, CI; Andrew, RL
  • Adegenet: a R package for the multivariate analysis of genetic markers
    Jombart, T
  • GST and its relatives do not measure differentiation
    Jost, L
  • Long-term genetic monitoring reveals contrasting changes in the genetic composition of newly established populations of the intertidal snail Bembicium vittatum
    Kennington, WJ; Hevroy, TH; Johnson, MS
  • Mussels (Mytilidae: Genus Perna) of the Indian coast
    Kuriakose, PS
  • Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation
    Latch, EK; Dharmarajan, G; Glaubitz, JC; Rhodes, OE
  • Isolation and characterization of polymorphic microsatellites from Asian green mussel (Perna viridis)
    Lin, G; Feng, F; Yue, GH
  • Genetic variations in populations from farms and natural habitats of Asian Green Mussel, Perna viridis, in Singapore inferred from nine microsatellite markers
    Lin, G; Lo, LC; Yue, GH
  • Complementarity of statistical treatments to reconstruct worldwide routes of invasion: the case of the Asian ladybird Harmonia axyridis
    Lombaert, E; Guillemaud, T; Lundgren, J; Koch, R; Facon, B; Grez, A; Loomans, A; Malausa, T; Nedved, O; Rhule, E; Staverlokk, A; Steenberg, T; Estoup, A
  • Ecology of marine fouling organisms at Eastern Johore Straits
    Low, LL; Khoo, HW; Koh, LL
  • Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data
    Luikart, G; Cornuet, JM
  • Isolation and characterization of 16 polymorphic microsatellite loci for the Asian green mussel Perna viridis (Mollusca, Mytilidae)
    Lukehurst, SS; Dias, PJ; Huhn, M; Madduppa, HH; Lee, SSC; Teo, S; Gardner, MG; McDonald, JI
  • Assignment methods: matching biological questions with appropriate techniques
    Manel, S; Gaggiotti, OE; Waples, RS
  • Population bottlenecks and non equilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck
    Maruyama, T; Fuerst, PA
  • Detection of the tropical mussel species Perna viridis in temperate Western Australia: possible association between spawning and a marine heat pulse
    McDonald, JI
  • Origin and dispersal history of two colonial ascidian clades in the Botryllus schlosseri species complex
    Nydam, ML; Giesbrecht, KB; Stephenson, EE
  • Genetic characterization of Perna viridis L. in peninsular Malaysia using microsatellite markers
    Ong, CC; Yusoff, K; Yap, C; Tan, S
  • How some alien species become invasive, some ecological, genetic and epigenetic basis for bioinvasions
    Perez, JE; Alfonsi, C; Ramos, C; Gomez, JA; Munoz, C; Salazar, SK
  • Marine biosecurity: the importance of awareness, support and cooperation in managing a successful incursion response
    Piola, RF; McDonald, JI
  • BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data
    Piry, S; Luikart, G; Cornuet, JM
  • Spatial and temporal genetic variation of green mussel, Perna viridis in the Gulf of Thailand and implication for aquaculture
    Prakoon, W; Tunkijjanukij, S; Nguyen, TTT; Na-Nakorn, U
  • Inference of population structure using multilocus genotype data
    Pritchard, JK; Stephens, M; Donnelly, P
  • The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem
    Puechmaille, SJ
  • Greening of the coasts: a review of the Perna viridis success story
    Rajagopal, S; Venugopalan, VP; Velde, G; Jenner, HA
  • GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism
    Raymond, M; Rousset, F
  • Analysing tables of statistical tests
    Rice, WR
  • Contrasting patterns of genome-wide polymorphism in native and invasive range of the marine mollusc Crepidula fornicata
    Riquet, F; Daguin-Thiébaut, C; Ballenghien, M; Bierne, N; Viard, F
  • Tracking invasion histories in the sea: facing complex scenarios using multilocus data
    Rius, M; Turon, X; Ordóñez, V; Pascual, M
  • Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux
    Rousset, F
  • DnaSP version3: an integrated program for molecular population genetics and molecular evolution analysis
    Rozas, J; Rozas, R
  • No saturation in the accumulation of alien species worldwide
    Seebens, H; Blackburn, TM; Dyer, EE; Genovesi, P; Hulme, PE; Jeschke, JM; Pagad, S; Pysek, P; Winter, M; Arianoutsou, M; Bacher, S; Blasius, B; Brundu, G; Capinha, C; Celesti-Grapow, L; Dawson, W; Dullinger, S; Fuentes, N; Jäger, H; Kartesz, J; Kenis, M; Kreft, H; Kühn, I; Lenzner, B; Liebhold, A; Mosena, A; Moser, D; Nishino, M; Pearman, D; Pergl, J; Rabitsch, W; Rojas-Sandoval, J; Roques, A; Rorke, S; Rossinelli, S; Roy, HE; Scalera, R; Schindler, S; Stajerova, K; Tokarska-Guzik, B; Kleunen, M; Walker, K; Weigelt, P; Yamanaka, T; Essl, F
  • A classification of the genus Perna (Mytilidae)
    Siddall, SE
  • Statistical method for testing neutral mutation hypothesis by DNA polymorphism
    Tajima, F
  • A cladistic-analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III Cladogram estimation
    Templeton, AR; Crandall, KA; Sing, CF
  • Can novel genetic analyses help to identify low-dispersal marine invasive species?
    Teske, PR; Sandoval-Castillo, J; Waters, JM; Beheregaray, LB
  • The biology and culture of mussels of the genus Perna. ICLARM Studies and Reviews 17
    Vakily, JM
  • Micro-checker: software for identifying and correcting genotyping errors in microsatellite data
    Oosterhout, C; Hutchinson, WF; Wills, DPM; Shipley, P
  • FaBox: an online toolbox for fasta sequences
    Villesen, P
  • Estimating F-statistics for the analysis of population structure
    Weir, BS; Cockerham, CC
  • If the Asian green mussel, Perna viridis (Linnaeus, 1758), poses the greatest invasive marine species threat to Australia, why has it not invaded?
    Wells, FE
  • GST and D do not replace FST
    Whitlock, MC
  • A molecular phylogeny of the marine mussel genus Perna (Bivalvia: Mytilidae) based on nuclear (ITS1&2) and mitochondrial DNA sequences
    Wood, AR; Apte, S; MacAvoy, ES; Gardner, JPA
  • On experimental transplantation of Perna viridis (Linnaeus) along the Guangxi coast
    Ye, W
  • Annual reproductive cycle of the green mussel Perna viridis (L.) at Enoshima Island, Sagami Bay, Japan
    Yoshiyasu, H; Ueda, I; Asahina, K
  • Invasion genetics of the Ciona intestinalis species complex: from regional endemism to global homogeneity
    Zhan, A; MacIsaac, HJ; Cristescu, ME

You’re reading a free preview. Subscribe to read the entire article.

Try 2 weeks free now

DeepDyve is your
personal research library

It’s your single place to instantly
discover and read the research
that matters to you.

Enjoy affordable access to
over 18 million articles from more than
15,000 peer-reviewed journals.

All for just $49/month

Explore the DeepDyve Library

or browse the journals available

Search

Query the DeepDyve database, plus search all of PubMed and Google Scholar seamlessly

Organize

Save any article or search result from DeepDyve, PubMed, and Google Scholar... all in one place.

Access

Get unlimited, online access to over 18 million full-text articles from more than 15,000 scientific journals.

Your journals are on DeepDyve

Read from thousands of the leading scholarly journals from SpringerNature, Elsevier, Wiley-Blackwell, Oxford University Press and more.

All the latest content is available, no embargo periods.

See the journals in your area

DeepDyve

Freelancer

DeepDyve

Pro

Price

FREE

$49/month
$360/year

Save searches from
Google Scholar,
PubMed

Create folders to
organize your research

Export folders, citations

Read DeepDyve articles

Abstract access only

Unlimited access to over
18 million full-text articles

Print

20 pages / month

PDF Discount

20% off

Sign up
for free
Start 14 day
Free Trial