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(1995)
Measurements of Similarity of Synteny Groups and an Analysis of Genome Rearrangemetns in the Evolution of Mammals
I.A. Zakharov, A.K. Valeev (1988)
Quantitative Analysis of Mammalian Genome Evolution by Comparing Genetic MapsDokl. Akad. Nauk SSSR, 301
Zakharov Ia, Nikiforov Sv, Stepaniuk Ev (1997)
[Homology and evolution of gene orders: simulation and reconstruction of the evolutionary process]., 33
Zakharov Ia, Valeev Ak (1988)
[Quantitative analysis of the evolution of mammalian genome by comparing genetic maps].Doklady Akademii nauk SSSR, 301 5
I.A. Zakharov (1995)
Bioinformatics and Genome Research: Proc. 3d Int. Conf.
I. Zakharov, V. Nikiforov, E. Stepaniuk (1996)
[Homology and evolution of gene order: a simple method for testing a hypothesis on the nature of this evolution].Genetika, 32 1
I.A. Zakharov, V.S. Nikiforov, E.V. Stepanyuk (1992)
Homology and Evolution of Gene Orders: A Combinatorial Measure of Similarity of Synteny Groups and Modeling of the Evolutionary ProcessGenetika, 28
Martin Wu, Ling Sun, J. Vamathevan, M. Riegler, R. Deboy, J. Brownlie, E. McGraw, W. Martin, Christian Esser, Nahal Ahmadinejad, C. Wiegand, R. Madupu, M. Beanan, L. Brinkac, Sean Daugherty, A. Durkin, J. Kolonay, W. Nelson, Y. Mohamoud, P. Lee, Kristi Berry, M. Young, T. Utterback, J. Weidman, W. Nierman, I. Paulsen, K. Nelson, H. Tettelin, Scott O'Neill, Scott O'Neill, J. Eisen (2004)
Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic ElementsPLoS Biology, 2
J. Ehrlich, D. Sankoff, J. Nadeau (1997)
Synteny conservation and chromosome rearrangements during mammalian evolution.Genetics, 147 1
(2005)
Intracellular Parasite Wolbachia and the Origin of Eukaryotes, Usp
Eugeni Belda, A. Moya, Francisco Silva (2005)
Genome Rearrangement Distances and Gene Order Phylogeny in γ-ProteobacteriaMolecular Biology and Evolution, 22
M. Suyama, P. Bork (2001)
Evolution of prokaryotic gene order: genome rearrangements in closely related species.Trends in genetics : TIG, 17 1
C. Bandi, T. Anderson, C. Genchi, M. Blaxter (1998)
Phylogeny of Wolbachia in filarial nematodesProceedings of the Royal Society of London. Series B: Biological Sciences, 265
D. Sankoff, G. Leduc, Natalie ANTOINEt, Bruno PAQUINt, B. LANGt, Robert CEDERGRENt (1992)
Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome.Proceedings of the National Academy of Sciences of the United States of America, 89 14
C. Bandi, T.J.C. Anderson, C. Genchi, M.L. Blaxter (1998)
Phylogeny of Wolbachia-Like Bacteria in Filarial NematodesProc. R. Soc. London, B, 265
M. Blanchette, T. Kunisawa, D. Sankoff (1999)
Gene Order Breakpoint Evidence in Animal Mitochondrial PhylogenyJournal of Molecular Evolution, 49
(1991)
Measurement of Similarity between Orders of Homologous Genes
Zakharov Ia, Nikiforov Vs, Stepaniuk Ev (1992)
[Homology and evolution of gene orders: combinatorial measure of synteny group similarity and simulation of the evolution process]., 28
The gene orders in the genomes of nine alpha-proteobacteria were compared using quantitative indices S (the relative number of common pairs of adjacent genes) and L (the mean difference between intergenic distances). A sample of 200 homologous genes, occurring in all 11 strains, was studied. In all of the genomes examined, 20 conserved, “uninterrupted” regions, including in total 63 out of 200 genes, were found. The rate of evolutionary change in the gene order widely varied in different evolutionary lineages. The highest rate (40 to 60 genome rearrangements per 100 Myr) was characteristic of the intercellular parasite Wolbachia (Rickettsiales). Computer simulation has showed that the S to L ratio observed in the sample testified that the probability of large genome rearrangements was somewhat lower than that of small ones.
Russian Journal of Genetics – Springer Journals
Published: Jan 17, 2006
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