Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer_journal/dna-methylation-differences-in-soybean-hybrids-and-their-parental-pekc0qTEqI
References (22)
-
P. Vos, R. Hogers, M. v d Bleeker, T. Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, M. Zabeau (1995)
AFLP: a new technique for DNA fingerprintingNucleic Acids Res., 23
-
H. Jin, W. Hu, Z. Wei, L. Wan, G. Li, G. Tan, L. Zhu, G. He (2008)
Alterations in cytosine methylation and species-specific transcription induced by interspecific hybridization between Oryza sativa and O. officinalisTheor. Appl. Genet., 117
-
C.B. Zhang, B. Peng, W.L. Zhang, S.M. Wang, H. Sun, Y.S. Dong, L.M. Zhao (2014)
Application of SSR markers for purity testing of commercial hybrid soybean (Glycine max L.)J. Agr. Sci. Tech., 16
-
S. Porebski, L.G. Bailey, B.R. Baum (1997)
Modification of a CTAB DNA extraction protocol for plants containing high polysaccharides and polyphenol componentPlant Mol. Biol. Rep., 15
-
A. Salmon, J. Clotault, E. Jenczewski, V. Chable, M.J. Manzanares-Dauleux (2008)
Brassica oleracea displays a high level of DNA methylation polymorphismPlant Sci., 174
-
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff (2007)
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcriptionNat. Genet., 39
-
A. Li, W.Q. Song, C.B. Chen, Y.N. Zhou, L.W. Qi, C.G. Wang (2013)
DNA methylation status is associated with the formation of heterosis in Larix kaempferi intraspecific hybridsMol. Breed., 31
-
Q. Song, X. Lu, Q. Li, H. Chen, X. Hu, B. Ma, W.K. Zhang, S.Y. Chen, J.S. Zhang (2013)
Genomewide analysis of DNA methylation in soybeanMol. Plant, 6
-
H. Shen, H. He, J. Li, W. Chen, X. Wang, L. Guo, Z. Peng, G. He, S. Zhong, Y. Qi, W. Terzaghi, X.W. Deng (2012)
Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybridsPlant Cell, 24
-
Y.P. Wang, X.Y. Wang, T.H. Lee, S. Mansoor, A.H. Paterson (2013)
Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice)New Phytol., 198
-
L. Xiong, C. Xu, M.S. Maroof, Q. Zhang (1999)
Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism techniqueMol. Gen. Genet., 261
-
S. Takuno, B.S. Gaut (2013)
Gene body methylation is conserved between plant orthologs and is of evolutionary consequenceProc. Natl. Acad. Sci. USA, 110
-
X. Zhong, Y. Wang, X. Liu, L. Gong, Y. Ma, B. Qi, Y.S. Dong, B. Liu (2009)
DNA methylation polymorphism in annual wild soybean (Glycine soja Sieb. et Zucc.) and cultivated soybean (G. max L. Merr.)Can. J. Plant Sci., 89
-
J. Fulneček, A. Kovařík (2014)
How to interpret methylation sensitive amplified polymorphism (MSAP) profilesBMC Genet., 15
-
X.Y. Zhang, J. Yazaki, A. Sundaresan, S. Cokus, S.W. Chan, H.M. Chen, I.R. Henderson, P. Shinn, M. Pellegrini, S.E. Jacobsen, J.R. Ecker (2006)
Genome-wide high-resolution mapping and functional analysis of DNA methylation in ArabidopsisCell, 126
-
A.M. Banaei Moghaddam, J. Fuchs, T. Czauderna, A. Houben, M.F. Mette (2010)
Intraspecific hybrids of Arabidopsis thaliana revealed no gross alterations in endopolyploidy, DNA methylation, histone modifications and transcript levelsTheor. Appl. Genet., 120
-
D. Charlesworth, J.H. Willis (2009)
The genetics of inbreeding depressionNat. Rev. Genet., 10
-
R.G. Palmer, J. Gai, H. Sun, J.W. Burton (2010)
Plant Breeding Reviews -
Y. Zhao, S. Yu, C. Xing, S. Fan, M. Song (2008)
Analysis of DNA methylation in cotton hybrids and their parentsMol. Biol., 42
-
J.F. Crow (2008)
Mid-century controversies in population geneticsAnnu. Rev. Genet., 42
-
X. Zhao, Y. Chai, B. Liu (2007)
Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybridsPlant Sci., 172
-
K. Sakthivel, K. Girishkumar, G. Ramkumar, V. Shenoy, S. Kajjidoni, P. Salimath (2010)
Alterations in inheritance pattern and level of cytosine DNA methylation, and their relationship with heterosis in riceEuphytica, 175
- Publisher
- Springer Journals
- Copyright
- Copyright © 2018 by Pleiades Publishing, Ltd.
- Subject
- Life Sciences; Plant Physiology; Plant Sciences
- ISSN
- 1021-4437
- eISSN
- 1608-3407
- DOI
- 10.1134/S1021443718030160
- Publisher site
- See Article on Publisher Site
Abstract
To understand the methylation level and genetic delivery from parental line to their hybrid in soybean (Glycine max (L.) Merr.), four groups of parental lines and their hybrids were analyzed using methylation sensitive amplification polymorphism (MSAP). Comparisons of the different methylation distributions revealed. (1) The methylation level of the whole hybrid was lower than that of the corresponding parent lines, and the internal cytosine-methylation pattern was dominant. (2) In this study, comparing the total methylation levels in hybrids and the midparent values we assume that the larger differences in DNA methylation between parental lines lead to stronger heterosis. (3) Four demethylated and one hyper-methylated fragments were sequenced and located in the reference genome by blast analysis. These methylation changes could cause expression levels changes of a protein kinase, zinc finger protein and a mitochondrial transcript, which would affect a variety of metabolic pathways in soybean, providing an explanation for the observed heterosis.
Journal
Russian Journal of Plant Physiology – Springer Journals
Published: Jun 1, 2018