Access the full text.
Sign up today, get DeepDyve free for 14 days.
Maïna Floris, Hany Mahgoub, E. Lanet, C. Robaglia, B. Menand (2009)
Post-transcriptional Regulation of Gene Expression in Plants during Abiotic StressInternational Journal of Molecular Sciences, 10
A. Aizer, Yehuda Brody, L. Ler, N. Sonenberg, R. Singer, Y. Shav-Tal (2008)
The dynamics of mammalian P body transport, assembly, and disassembly in vivo.Molecular biology of the cell, 19 10
Carin Zwartjes, S. Jayne, Debbie Berg, H. Timmers (2004)
Repression of Promoter Activity by CNOT2, a Subunit of the Transcription Regulatory Ccr4-Not Complex*Journal of Biological Chemistry, 279
R. Parker, Haiwei Song (2004)
The enzymes and control of eukaryotic mRNA turnoverNature Structural &Molecular Biology, 11
K. Mulder, A. Brenkman, A. Inagaki, Niels Broek, H. Timmers (2007)
Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complexNucleic Acids Research, 35
Meenakshi Doma, R. Parker (2007)
RNA Quality Control in EukaryotesCell, 131
Dinghai Zheng, Nader Ezzeddine, Chyi-Ying Chen, Wenmiao Zhu, Xiangwei He, A. Shyu (2008)
Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cellsThe Journal of Cell Biology, 182
G. Caponigro, R. Parker (1995)
Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast.Genes & development, 9 19
M. Morita, Toru Suzuki, Takahisa Nakamura, Kazumasa Yokoyama, Takashi Miyasaka, Tadashi Yamamoto (2007)
Depletion of Mammalian CCR4b Deadenylase Triggers Elevation of the p27Kip1 mRNA Level and Impairs Cell GrowthMolecular and Cellular Biology, 27
Shihoko Kojima, D. Shingle, C. Green (2011)
Post-transcriptional control of circadian rhythmsJournal of Cell Science, 124
S. Meyer, C. Temme, E. Wahle (2004)
Messenger RNA Turnover in Eukaryotes: Pathways and EnzymesCritical Reviews in Biochemistry and Molecular Biology, 39
J. Walley, Dior Kelley, Gergana Nestorova, D. Hirschberg, K. Dehesh (2009)
Arabidopsis Deadenylases AtCAF1a and AtCAF1b Play Overlapping and Distinct Roles in Mediating Environmental Stress Responses1[C][W][OA]Plant Physiology, 152
R. Jefferson, T. Kavanagh, M. Bevan (1987)
GUS fusions: beta‐glucuronidase as a sensitive and versatile gene fusion marker in higher plants.The EMBO Journal, 6
C. Weber, L. Nover, M. Fauth (2008)
Plant stress granules and mRNA processing bodies are distinct from heat stress granules.The Plant journal : for cell and molecular biology, 56 4
Morgan Tucker, M. Valencia-Sanchez, R. Staples, Junji Chen, C. Denis, R. Parker (2001)
The Transcription Factor Associated Ccr4 and Caf1 Proteins Are Components of the Major Cytoplasmic mRNA Deadenylase in Saccharomyces cerevisiaeCell, 104
C. Wilusz, Weirong Wang, Stuart Peltz (2001)
Curbing the nonsense: the activation and regulation of mRNA surveillance.Genes & development, 15 21
C. Temme, Lianbing Zhang, E. Kremmer, C. Ihling, A. Chartier, A. Sinz, M. Simonelig, E. Wahle (2010)
Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation.RNA, 16 7
Daniela Teixeira, R. Parker (2007)
Analysis of P-body assembly in Saccharomyces cerevisiae.Molecular biology of the cell, 18 6
S. Ho, Yu-Chan Chao, Wu-Fu Tong, Su-May Yu (2001)
Sugar coordinately and differentially regulates growth- and stress-related gene expression via a complex signal transduction network and multiple control mechanisms.Plant physiology, 125 2
A. Aslam, S. Mittal, Frederic Koch, J. Andrau, G. Winkler (2009)
The Ccr4-NOT deadenylase subunits CNOT7 and CNOT8 have overlapping roles and modulate cell proliferation.Molecular biology of the cell, 20 17
D. Staiger, R. Green (2011)
RNA-based regulation in the plant circadian clock.Trends in plant science, 16 10
Kentaro Nakaminami, A. Matsui, K. Shinozaki, M. Seki (2012)
RNA regulation in plant abiotic stress responses.Biochimica et biophysica acta, 1819 2
A. Schwede, L. Ellis, Julia Luther, Mark Carrington, Georg Stoecklin, Christine Clayton (2008)
A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cellsNucleic Acids Research, 36
A. Schwede, Theresa Manful, Bhaskar Jha, Claudia Helbig, Natalia Bercovich, Mhairi Stewart, C. Clayton (2009)
The role of deadenylation in the degradation of unstable mRNAs in trypanosomesNucleic Acids Research, 37
J. Walley, Dior Kelley, T. Savchenko, K. Dehesh (2010)
Investigating the function of CAF1 deadenylases during plant stress responsesPlant Signaling & Behavior, 5
T. Ohn, Y. Chiang, Darren Lee, Gang Yao, Chongxu Zhang, C. Denis (2007)
CAF1 plays an important role in mRNA deadenylation separate from its contact to CCR4Nucleic Acids Research, 35
L. Clark, P. Viswanathan, Gloria Quigley, Y. Chiang, J. McMahon, Gang Yao, Junji Chen, Andreas Nelsbach, C. Denis (2004)
Systematic Mutagenesis of the Leucine-rich Repeat (LRR) Domain of CCR4 Reveals Specific Sites for Binding to CAF1 and a Separate Critical Role for the LRR in CCR4 Deadenylase Activity*Journal of Biological Chemistry, 279
A. Feddersen, E. Dedic, Esben Poulsen, M. Schmid, L. Van, T. Jensen, D. Brodersen (2011)
Saccharomyces cerevisiae Ngl3p is an active 3′–5′ exonuclease with a specificity towards poly-A RNA reminiscent of cellular deadenylasesNucleic Acids Research, 40
S. Tharun, R. Parker (2001)
Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs.Molecular cell, 8 5
H. Cai, Xingming Lian, Zhiyong Song (2011)
Sequence and expression analysis of CCR4-associated factor 1 (OsCAF1) gene family in rice, 2
F. Wyers, Mathieu Rougemaille, Gwenael Badis, J. Rousselle, M. Dufour, J. Boulay, B. Regnault, F. Devaux, A. Namane, B. Séraphin, D. Libri, A. Jacquier (2005)
Cryptic Pol II Transcripts Are Degraded by a Nuclear Quality Control Pathway Involving a New Poly(A) PolymeraseCell, 121
Hongge Jia, Bram Loock, Mingjun Liao, J. Verbelen, K. Vissenberg (2007)
Combination of the ALCR/alcA ethanol switch and GAL4/VP16-UAS enhancer trap system enables spatial and temporal control of transgene expression in Arabidopsis.Plant biotechnology journal, 5 4
Nowel Azzouz, O. Panasenko, Geoffroy Colau, M. Collart (2009)
The CCR4-NOT Complex Physically and Functionally Interacts with TRAMP and the Nuclear ExosomePLoS ONE, 4
Junji Chen, Y. Chiang, C. Denis (2002)
CCR4, a 3′–5′ poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylaseThe EMBO Journal, 21
Jun Xu, N. Chua (2009)
Arabidopsis Decapping 5 Is Required for mRNA Decapping, P-Body Formation, and Translational Repression during Postembryonic Development[W]The Plant Cell Online, 21
Thomas Sweet, Brooke Boyer, Wenqian Hu, K. Baker, Jeff Coller (2007)
Microtubule disruption stimulates P-body formation.RNA, 13 4
A. Yamashita, Tsung-Cheng Chang, Y. Yamashita, Wenmiao Zhu, Zhenping Zhong, Chyi-Ying Chen, A. Shyu (2005)
Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnoverNature Structural &Molecular Biology, 12
Y. Sano, R. Sano (1990)
Variation of the intergenic spacer region of ribosomal DNA in cultivated and wild rice species.Genome, 33
D. Egecioglu, Anthony Henras, G. Chanfreau (2006)
Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome.RNA, 12 1
C. Körner, M. Wormington, M. Muckenthaler, S. Schneider, E. Dehlin, E. Wahle (1998)
The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytesThe EMBO Journal, 17
S. Puranik, P. Sahu, S. Mandal, V. B., S. Parida, M. Prasad (2013)
Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.)PLoS ONE, 8
A. Eulalio, I. Behm-Ansmant, E. Izaurralde (2007)
P bodies: at the crossroads of post-transcriptional pathwaysNature Reviews Molecular Cell Biology, 8
D. Rio, M. Ares, G. Hannon, T. Nilsen (2010)
Polyacrylamide gel electrophoresis of RNA.Cold Spring Harbor protocols, 2010 6
L. Brand, Mirjam Hörler, E. Nüesch, S. Vassalli, P. Barrell, Wei Yang, R. Jefferson, U. Grossniklaus, M. Curtis (2006)
AVersatile and Reliable Two-Component System for Tissue-Specific Gene Induction in Arabidopsis
Y. Chiba, Katsuhiko Mineta, M. Hirai, Yuya Suzuki, S. Kanaya, Hiro Takahashi, H. Onouchi, J. Yamaguchi, S. Naito (2013)
Changes in mRNA stability associated with cold stress in Arabidopsis cells.Plant & cell physiology, 54 2
Paul Anderson, N. Kedersha (2006)
RNA granulesThe Journal of Cell Biology, 172
W. Liang, Changbao Li, Fang Liu, Hongling Jiang, Shuyu Li, Jiaqiang Sun, Xiaoyan Wu, Chuanyou Li (2009)
The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responsesCell Research, 19
S. Jayne, Carin Zwartjes, F. Schaik, H. Timmers (2006)
Involvement of the SMRT/NCoR-HDAC3 complex in transcriptional repression by the CNOT2 subunit of the human Ccr4-Not complex.The Biochemical journal, 398 3
X. Piao, Xue Zhang, Ligang Wu, J. Belasco (2010)
CCR4-NOT Deadenylates mRNA Associated with RNA-Induced Silencing Complexes in Human CellsMolecular and Cellular Biology, 30
J. LaCava, J. Houseley, Cosmin Saveanu, E. Petfalski, E. Thompson, A. Jacquier, D. Tollervey (2005)
RNA Degradation by the Exosome Is Promoted by a Nuclear Polyadenylation ComplexCell, 121
G. Winkler, D. Balacco (2013)
Heterogeneity and complexity within the nuclease module of the Ccr4-Not complexFrontiers in Genetics, 4
D. Todaka, K. Nakashima, K. Shinozaki, K. Yamaguchi-Shinozaki (2012)
Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in riceRice, 5
Marcelo Pomeranz, Cyrus Hah, Pei-Chi Lin, Shin Kang, J. Finer, P. Blackshear, Jyan-chyun Jang (2009)
The Arabidopsis Tandem Zinc Finger Protein AtTZF1 Traffics between the Nucleus and Cytoplasmic Foci and Binds Both DNA and RNA12[C][W][OA]Plant Physiology, 152
Mariela Loschi, Claudia Leishman, Neda Berardone, G. Boccaccio (2009)
Dynein and kinesin regulate stress-granule and P-body dynamicsJournal of Cell Science, 122
S. Mittal, A. Aslam, R. Doidge, R. Medica, G. Winkler (2011)
The Ccr4a (CNOT6) and Ccr4b (CNOT6L) deadenylase subunits of the human Ccr4–Not complex contribute to the prevention of cell death and senescenceMolecular Biology of the Cell, 22
C. Temme, Sophie Zaessinger, S. Meyer, M. Simonelig, E. Wahle (2004)
A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in DrosophilaThe EMBO Journal, 23
A. Dupressoir, A. Morel, Willy Barbot, M. Loireau, L. Corbo, T. Heidmann (2001)
Identification of four families of yCCR4- and Mg2+-dependent endonuclease-related proteins in higher eukaryotes, and characterization of orthologs of yCCR4 with a conserved leucine-rich repeat essential for hCAF1/hPOP2 bindingBMC Genomics, 2
Morgan Tucker, R. Staples, M. Valencia-Sanchez, Denise Muhlrad, R. Parker (2002)
Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiaeThe EMBO Journal, 21
M. Collart, O. Panasenko (2012)
The Ccr4--not complex.Gene, 492 1
N. Lau, K. Mulder, A. Brenkman, S. Mohammed, Niels Broek, A. Heck, H. Timmers (2010)
Phosphorylation of Not4p Functions Parallel to BUR2 to Regulate Resistance to Cellular Stresses in Saccharomyces cerevisiaePLoS ONE, 5
A. Moreno, Á. Alba, F. Bardou, M. Crespi, H. Vaucheret, A. Maizel, Allison Mallory (2013)
Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plantsNucleic Acids Research, 41
C. Dez, J. Houseley, D. Tollervey
Surveillance of nuclear‐restricted pre‐ribosomes within a subnucleolar region of Saccharomyces cerevisiaeThe EMBO Journal, 25
S. Sarowar, H. Oh, H. Cho, K. Baek, E. Seong, Y. Joung, G. Choi, Sanghyeob Lee, D. Choi (2007)
Capsicum annuum CCR4-associated factor CaCAF1 is necessary for plant development and defence response.The Plant journal : for cell and molecular biology, 51 5
Yannis Robin-Lespinasse, Stéphanie Sentis, Chloé Kolytcheff, M. Rostan, L. Corbo, M. Romancer (2007)
hCAF1, a new regulator of PRMT1-dependent arginine methylationJournal of Cell Science, 120
V. Stoppin-Mellet, J. Gaillard, T. Timmers, E. Neumann, J. Conway, M. Vantard (2007)
Arabidopsis katanin binds microtubules using a multimeric microtubule-binding domain.Plant physiology and biochemistry : PPB, 45 12
Y. Funakoshi, Yusuke Doi, N. Hosoda, N. Uchida, M. Osawa, I. Shimada, M. Tsujimoto, Tsutomu Suzuki, T. Katada, S. Hoshino (2007)
Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.Genes & development, 21 23
M. Curtis, U. Grossniklaus (2003)
A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta[w]Plant Physiology, 133
José Pruneda-Paz, S. Kay (2010)
An expanding universe of circadian networks in higher plants.Trends in plant science, 15 5
M. Bradford (1976)
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.Analytical biochemistry, 72
F. Souret, J. Kastenmayer, P. Green (2004)
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets.Molecular cell, 15 2
S. Kadaba, A. Krueger, T. Trice, Annette Krecic, A. Hinnebusch, JamesC Anderson (2004)
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.Genes & development, 18 11
M. Fabian, Géraldine Mathonnet, Thomas Sundermeier, Hansruedi Mathys, Jakob Zipprich, Y. Svitkin, Fabiola Rivas, M. Jinek, J. Wohlschlegel, J. Doudna, Chyi-Ying Chen, A. Shyu, J. Yates, G. Hannon, W. Filipowicz, T. Duchaine, N. Sonenberg (2009)
Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation.Molecular cell, 35 6
F. Fang, J. Hoskins, J. Butler (2004)
5-Fluorouracil Enhances Exosome-Dependent Accumulation of Polyadenylated rRNAsMolecular and Cellular Biology, 24
K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, Sudhir Kumar (2011)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Molecular biology and evolution, 28 10
Samantha Rayson, Luis Arciga-Reyes, Lucie Wootton, M. Zabala, W. Truman, N. Graham, M. Grant, B. Davies (2012)
A Role for Nonsense-Mediated mRNA Decay in Plants: Pathogen Responses Are Induced in Arabidopsis thaliana NMD MutantsPLoS ONE, 7
Y. Chiba, P. Green (2009)
mRNA Degradation Machinery in PlantsJournal of Plant Biology, 52
L. Molin, A. Puisieux (2005)
C. elegans homologue of the Caf1 gene, which encodes a subunit of the CCR4-NOT complex, is essential for embryonic and larval development and for meiotic progression.Gene, 358
C. Lata, M. Prasad (2011)
Role of DREBs in regulation of abiotic stress responses in plants.Journal of experimental botany, 62 14
I. López-Rosas, E. Orozco, L. Marchat, G. García‐Rivera, N. Guillén, C. Weber, E. Carrillo-Tapia, O. Cruz, C. Pérez-Plasencia, C. López-Camarillo (2012)
mRNA Decay Proteins Are Targeted to poly(A)+ RNA and dsRNA-Containing Cytoplasmic Foci That Resemble P-Bodies in Entamoeba histolyticaPLoS ONE, 7
P. Agarwal, P. Agarwal, Parinita Agarwal, Parinita Agarwal, M. Reddy, S. Sopory (2006)
Role of DREB transcription factors in abiotic and biotic stress tolerance in plantsPlant Cell Reports, 25
K. Mulder, G. Winkler, H. Th, Marc Timmers (2005)
DNA damage and replication stress induced transcription of RNR genes is dependent on the Ccr4–Not complexNucleic Acids Research, 33
D. Belostotsky, L. Sieburth (2009)
Kill the messenger: mRNA decay and plant development.Current opinion in plant biology, 12 1
K. Nakashima, Yusuke Ito, K. Yamaguchi-Shinozaki (2009)
Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses1Plant Physiology, 149
N. Kedersha, G. Stoecklin, M. Ayodele, P. Yacono, J. Lykke-Andersen, M. Fritzler, D. Scheuner, R. Kaufman, D. Golan, P. Anderson (2005)
Stress granules and processing bodies are dynamically linked sites of mRNP remodelingThe Journal of Cell Biology, 169
Amie Scott, Sarah Wyatt, Pei-Lan Tsou, Dominique Robertson, Nina Allen (1999)
Model system for plant cell biology: GFP imaging in living onion epidermal cells.BioTechniques, 26 6
Deadenylation, also called poly(A) tail shortening, is the first, rate-limiting step in the general cytoplasmic mRNA degradation in eukaryotic cells. The CCR4-NOT complex, containing the two key components carbon catabolite repressor 4 (CCR4) and CCR4-associated factor 1 (CAF1), is a major player in deadenylation. CAF1 belongs to the RNase D group in the DEDD superfamily, and is a protein conserved through evolution from yeast to humans and plants. Every higher plant, including Arabidopsis and rice, contains a CAF1 multigene family. In this study, we identified and cloned four OsCAF1 genes (OsCAF1A, OsCAF1B, OsCAF1G, and OsCAF1H) from rice. Four recombinant OsCAF1 proteins, rOsCAF1A, rOsCAF1B, rOsCAF1G, and rOsCAF1H, all exhibited 3′–5′ exonuclease activity in vitro. Point mutations in the catalytic residues of each analyzed recombinant OsCAF1 proteins were shown to disrupt deadenylase activity. OsCAF1A and OsCAF1G mRNA were found to be abundant in the leaves of mature plants. Two types of OsCAF1B mRNA transcript were detected in an inverse expression pattern in various tissues. OsCAF1B was transient, induced by drought, cold, abscisic acid, and wounding treatments. OsCAF1H mRNA was not detected either under normal conditions or during most stress treatments, but only accumulated during heat stress. Four OsCAF1-reporter fusion proteins were localized in both the cytoplasm and nucleus. In addition, when green fluorescent protein fused with OsCAF1B, OsCAF1G, and OsCAF1H, respectively, fluorescent spots were observed in the nucleolus. OsCAF1B fluorescent fusion proteins were located in discrete cytoplasmic foci and fibers. We present evidences that OsCAF1B colocalizes with AtXRN4, a processing body marker, and AtKSS12, a microtubules maker, indicating that OsCAF1B is a component of the plant P-body and associate with microtubules. Our findings provide biochemical evidence that OsCAF1 proteins may be involved in the deadenylation in rice. The unique expression patterns of each OsCAF1 were observed in various tissues when undergoing abiotic stress treatments, implying that each CAF1 gene in rice plays a specific role in the development and stress response of a plant.
Plant Molecular Biology – Springer Journals
Published: May 8, 2014
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.