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Zhen Li, Qing-wen Zhang, X. Zhou (2016)
A 2-Cys peroxiredoxin in response to oxidative stress in the pine wood nematode, Bursaphelenchus xylophilusScientific Reports, 6
Michael Schieber, N. Chandel (2014)
ROS Function in Redox Signaling and Oxidative StressCurrent Biology, 24
J. Höll, A. Vannozzi, S. Czemmel, C. D'onofrio, A. Walker, T. Rausch, M. Lucchin, P. Boss, I. Dry, J. Bogs (2013)
The R2R3-MYB Transcription Factors MYB14 and MYB15 Regulate Stilbene Biosynthesis in Vitis vinifera[W]Plant Cell, 25
S. Zheng, M. Dicke (2008)
Ecological Genomics of Plant-Insect Interactions: From Gene to Community1[C]Plant Physiology, 146
Y. Mamiya (1983)
Pathology of the Pine Wilt Disease Caused by Bursaphelenchus xylophilus.Annual review of phytopathology, 21
P. Thorpe, S. Mantelin, P. Cock, V. Blok, Mirela Coke, Sebastian Akker, E. Guzeeva, C. Lilley, G. Smant, A. Reid, K. Wright, P. Urwin, John Jones (2014)
Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallidaBMC Genomics, 15
TS Kwon, JH Shin, JH Lim, YK Kim, EJ Lee (2011)
Management of pine wilt disease in Korea through preventative silvicultural controlFor Ecol Manag, 261
R. Creelman, J. Mullet (1997)
BIOSYNTHESIS AND ACTION OF JASMONATES IN PLANTS.Annual review of plant physiology and plant molecular biology, 48
Y. Mamiya (1988)
History of pine wilt disease in Japan.Journal of nematology, 20 2
F Breusegem, JF Dat (2006)
Reactive oxygen species in plant cell deathPlant Physiol, 141
BJ Yang, HY Pan, J Tang, YY Wang, LF Wang (2003)
Bursaphelenchus xylophilus
Taha Rahman, M. Oirdi, Rocío González-Lamothe, K. Bouarab (2012)
Necrotrophic pathogens use the salicylic acid signaling pathway to promote disease development in tomato.Molecular plant-microbe interactions : MPMI, 25 12
L. Fu, B. Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li (2012)
CD-HIT: accelerated for clustering the next-generation sequencing dataBioinformatics, 28
F. Marroni, S. Pinosio, Eleonora Centa, I. Jurman, W. Boerjan, Nicoletta Felice, F. Cattonaro, M. Morgante (2011)
Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling.The Plant journal : for cell and molecular biology, 67 4
J. Barros, H. Serk, I. Granlund, E. Pesquet (2015)
The cell biology of lignification in higher plants.Annals of botany, 115 7
(2011)
Quality control and preprocessing of metagenomic datasetsBioinformatics, 27
William Chezem, Altamash Memon, Fu-Shuang Li, J. Weng, Nicole Clay (2017)
SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in ArabidopsisPlant Cell, 29
A. Kodan, H. Kuroda, F. Sakai (2002)
A stilbene synthase from Japanese red pine (Pinus densiflora): Implications for phytoalexin accumulation and down-regulation of flavonoid biosynthesisProceedings of the National Academy of Sciences of the United States of America, 99
M. Robinson, G. Smyth (2007)
Small-sample estimation of negative binomial dispersion, with applications to SAGE data.Biostatistics, 9 2
S. Altschul, Thomas Madden, A. Schäffer, Jinghui Zhang, Zheng Zhang, W. Miller, D. Lipman (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Nucleic acids research, 25 17
K. Futai (2013)
Pine wood nematode, Bursaphelenchus xylophilus.Annual review of phytopathology, 51
Cláudia Vicente, F. Nascimento, Margarida Espada, P. Barbosa, M. Mota, B. Glick, S. Oliveira (2012)
Characterization of Bacteria Associated with Pinewood Nematode Bursaphelenchus xylophilusPLoS ONE, 7
M. Dickman, P. Figueiredo (2011)
Comparative Pathobiology of Fungal Pathogens of Plants and AnimalsPLoS Pathogens, 7
F Marroni (2011)
Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generationEcotilling Plant J, 67
A. Caño-Delgado, S. Penfield, Caroline Smith, M. Catley, M. Bevan (2003)
Reduced cellulose synthesis invokes lignification and defense responses in Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 34 3
(2013)
A (2013) De novo transcript sequence reconstruc
Yeon-Bok Kim, Sang-Min Kim, Min-Kyoung Kang, T. Kuzuyama, J. Lee, Seung-Chan Park, S. Shin, Soo-un Kim (2009)
Regulation of resin acid synthesis in Pinus densiflora by differential transcription of genes encoding multiple 1-deoxy-D-xylulose 5-phosphate synthase and 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase genes.Tree physiology, 29 5
M. Yaish, Prakash Kumar (2015)
Salt tolerance research in date palm tree (Phoenix dactylifera L.), past, present, and future perspectivesFrontiers in Plant Science, 6
Weizhong Li, A. Godzik (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesBioinformatics, 22 13
D. Neale, A. Kremer (2011)
Forest tree genomics: growing resources and applicationsNature Reviews Genetics, 12
Ben Langmead (2010)
Aligning Short Sequencing Reads with BowtieCurrent Protocols in Bioinformatics, 32
P. Reymond, E. Farmer (1998)
Jasmonate and salicylate as global signals for defense gene expression.Current opinion in plant biology, 1 5
B. Haas, A. Papanicolaou, M. Yassour, M. Grabherr, Philip Blood, Joshua Bowden, M. Couger, David Eccles, Bo Li, Matthias Lieber, M. MacManes, M. Ott, Joshua Orvis, N. Pochet, F. Strozzi, N. Weeks, R. Westerman, T. William, Colin Dewey, R. Henschel, Richard LeDuc, N. Friedman, A. Regev (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysisNature Protocols, 8
T. Kwon, J. Shin, Jong-Hwan Lim, Young-Kul Kim, Eun Lee (2011)
Management of pine wilt disease in Korea through preventative silvicultural controlForest Ecology and Management, 261
(2006)
Reactive oxygen species signaling in response to pathogens
Bo Li, Colin Dewey (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBMC Bioinformatics, 12
Hanna Shin, Hyoshin Lee, K. Woo, E. Noh, Y. Koo, Kyung-Joon Lee (2009)
Identification of genes upregulated by pinewood nematode inoculation in Japanese red pine.Tree physiology, 29 3
Sayan Das, D. Demason, J. Ehlers, T. Close, P. Roberts (2008)
Histological characterization of root-knot nematode resistance in cowpea and its relation to reactive oxygen species modulation.Journal of experimental botany, 59 6
Yigen Chen, Yigen Chen, X. Ni, G. Buntin (2009)
Physiological, Nutritional, and Biochemical Bases of Corn Resistance to Foliage-Feeding Fall ArmywormJournal of Chemical Ecology, 35
J. McDowell, J. Dangl (2000)
Signal transduction in the plant immune response.Trends in biochemical sciences, 25 2
V. Williamson, Amar Kumar (2006)
Nematode resistance in plants: the battle underground.Trends in genetics : TIG, 22 7
A. Kume, N. Tsuboi, N. Nakatani, K. Nakane, N. Sakurai, N. Nakagawa, H. Sakugawa (2001)
Measurement of ethylene emission from Japanese red pine (Pinus densiflora) under field conditions in NOx-polluted areas.Environmental pollution, 111 3
Patricia Fernández-Calvo, A. Chini, Gemma Fernández-Barbero, J. Chico, Selena Gimenez-Ibanez, J. Geerinck, D. Eeckhout, Fabian Schweizer, Marta Godoy, J. Franco-Zorrilla, L. Pauwels, E. Witters, María Puga, J. Paz-Ares, A. Goossens, P. Reymond, G. Jaeger, R. Solano (2011)
The Arabidopsis bHLH Transcription Factors MYC3 and MYC4 Are Targets of JAZ Repressors and Act Additively with MYC2 in the Activation of Jasmonate Responses[C][W]Plant Cell, 23
Pine trees have economically and ecologically important roles. However, since the beginning of the twentieth century, a large number of trees have been seriously damaged by pine wilt disease (PWD). Although many studies have been conducted into blocking the spread of PWD, relatively few studies have been performed to examine the transcriptional responses of pine trees to the pine wood nematode (PWN). Here, we performed de novo assembly and analysis of the Pinus densiflora transcriptome by next-generation sequencing (NGS), to identify transcriptional responses that are related to the PWD infection. We identified that 586 of 71,003 assembled unigenes were differentially expressed after PWD infection. Gene ontology analysis showed that biological process terms related to defense responses (response to oxygen containing compound, response to jasmonic acid, response to biotic stimulus, cinnamic acid biosynthetic process, etc.) were significantly enriched in the DEGs after PWD infection. Our results suggested that jasmonic acid signaling is important in controlling defense response against PWD infection and is finely tuned by coordinated expression of positive and negative regulators. These findings contribute to our understanding of the transcriptional responses of P. densiflora to PWN, and could facilitate the development of biomarkers for diagnosis of PWD.
Plant Biotechnology Reports – Springer Journals
Published: May 23, 2018
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