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Completion of the sequence of rice gall dwarf virus from Guangxi, China

Completion of the sequence of rice gall dwarf virus from Guangxi, China The complete nucleotide sequences of segments S2, S3, S5, and S8–S11 of a Rice gall dwarf virus isolate from Guangxi Province, China, (RGDV-GX) were determined, completing the sequence of this isolate. The total genome (25,567nt) was similar in organization to a recently reported Thailand isolate (RGDV-T). A previously unreported second segment-specific repeat of 7 or 8nt was detected close to the 3′-end of segments S3, S5, and S8. The 3′-UTR of RGDV-GX S4 was 139nt shorter than that of RGDV-T; the insertion in RGDV-T contains a 34-nt inverted repeat, with the 3′-terminus probably abolishing the expected stem loop structure. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Archives of Virology Springer Journals

Completion of the sequence of rice gall dwarf virus from Guangxi, China

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References (23)

Publisher
Springer Journals
Copyright
Copyright © 2008 by Springer-Verlag
Subject
Biomedicine; Infectious Diseases; Medical Microbiology ; Virology
ISSN
0304-8608
eISSN
1432-8798
DOI
10.1007/s00705-008-0167-x
pmid
18661096
Publisher site
See Article on Publisher Site

Abstract

The complete nucleotide sequences of segments S2, S3, S5, and S8–S11 of a Rice gall dwarf virus isolate from Guangxi Province, China, (RGDV-GX) were determined, completing the sequence of this isolate. The total genome (25,567nt) was similar in organization to a recently reported Thailand isolate (RGDV-T). A previously unreported second segment-specific repeat of 7 or 8nt was detected close to the 3′-end of segments S3, S5, and S8. The 3′-UTR of RGDV-GX S4 was 139nt shorter than that of RGDV-T; the insertion in RGDV-T contains a 34-nt inverted repeat, with the 3′-terminus probably abolishing the expected stem loop structure.

Journal

Archives of VirologySpringer Journals

Published: Sep 1, 2008

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