Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer_journal/comparative-transcriptome-analysis-of-rhizoctonia-solani-resistant-and-Ah8Pt3IrpT
References (81)
-
S. Zuo, Ya-fang Zhang, Yuejun Yin, Guozhi Li, Guowei Zhang, Hui Wang, Zongxiang Chen, Xuebiao Pan (2014)
Fine-mapping of qSB-9TQ, a gene conferring major quantitative resistance to rice sheath blightMolecular Breeding, 34
-
S. Zuo, Z. Wang, Xijun Chen, Fang Gu, Ya-fang Zhang, Zongxiang Chen, Xuebiao Pan, C. Pan (2009)
Evaluation of Resistance of a Novel Rice Line YSBR1 to Sheath BlightActa Agronomica Sinica, 35
-
Chang-Jiang Zhao, Airong Wang, Yuyuan Shi, Liu-Qing Wang, Wen-de Liu, Zonghua Wang, Guo-dong Lu (2008)
Identification of defense-related genes in rice responding to challenge by Rhizoctonia solaniTheoretical and Applied Genetics, 116
-
S. Banniza, M. Holderness (2001)
Rice Sheath Blight — Pathogen Biology and Diversity -
S. Karmakar, K. Molla, P. Chanda, S. Sarkar, S. Datta, K. Datta (2015)
Green tissue-specific co-expression of chitinase and oxalateoxidase 4 genes in rice for enhanced resistance against sheath blightPlanta, 243
-
Chen Zhu, Lin Ai, Li Wang, Pingping Yin, Chenglan Liu, Shanshan Li, Huiming Zeng (2016)
De novo Transcriptome Analysis of Rhizoctonia solani AG1 IA Strain Early Invasion in Zoysia japonica RootFrontiers in Microbiology, 7
-
C. Jantasuriyarat, M. Gowda, Karl Haller, Jamie Hatfield, G. Lu, E. Stahlberg, Bo Zhou, Huameng Li, HyRan Kim, Yeisoo Yu, R. Dean, R. Wing, C. Soderlund, Guo‐Liang Wang (2005)
Large-Scale Identification of Expressed Sequence Tags Involved in Rice and Rice Blast Fungus Interaction1Plant Physiology, 138
-
F. Lee (1983)
Rice Sheath Blight: A Major Rice DiseasePlant Disease, 67
-
Zhou Du, Xin Zhou, Yi Ling, Zhenhai Zhang, Zhen Su (2010)
agriGO: a GO analysis toolkit for the agricultural communityNucleic Acids Research, 38
-
Nan Jiang, Richard Wiemels, A. Soya, Rebekah Whitley, Michael Held, A. Faik (2016)
Composition, Assembly, and Trafficking of a Wheat Xylan Synthase Complex1[OPEN]Plant Physiology, 170
-
Andrea Sánchez-Vallet, J. Mesters, B. Thomma (2015)
The battle for chitin recognition in plant-microbe interactions.FEMS microbiology reviews, 39 2
-
X. Chen, Yu Chen, L. Zhang, B. Xu, Jiahao Zhang, Zongxiang Chen, Y. Tong, S. Zuo, Jing-you Xu (2016)
Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.Plant disease, 100 2
-
L. Loon, Bart Geraats, H. Linthorst (2006)
Ethylene as a modulator of disease resistance in plants.Trends in plant science, 11 4
-
X. Peng, Haihua Wang, Jyan-chyun Jang, T. Xiao, Huanhuan He, Dan Jiang, Xin-ke Tang (2016)
OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solaniRice, 9
-
J. Glazebrook (2005)
Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens.Annual review of phytopathology, 43
-
T. Boller, S. He (2009)
Innate Immunity in Plants: An Arms Race Between Pattern Recognition Receptors in Plants and Effectors in Microbial PathogensScience, 324
-
S Banniza, M Holderness (2001)
Major Fungal Diseases of Rice -
SM Zuo, YM Zhang, X Xue, YJ Zhu, YF Zhang, ZX Chen, XJ Chen, XB Pan (2014)
Preliminary study on resistance mechanism of the new rice line YSBR1 to sheath blightChinese J Rice Sci, 28
-
Rebecca Lyons, J. Manners, K. Kazan (2013)
Jasmonate biosynthesis and signaling in monocots: a comparative overviewPlant Cell Reports, 32
-
M. Oirdi, Taha Rahman, Luciano Rigano, A. Hadrami, C. Rodriguez, F. Daayf, A. Vojnov, Kamal Bouaraba (2011)
Botrytis cinereaManipulates the Antagonistic Effects between Immune Pathways to Promote Disease Development in Tomato -
Q. Shen, Diqiu Yu, J. Jeon, P. Piffanelli, P. Abbruscato, Zejian Guo, Yuanji Zhang, T. Itoh, S. Lee, C. Buell, Y. Nagato, S. McCouch, M. Yano, Guo‐Liang Wang, K. Jena, L. Xiong, B. Meyers, P. Jaiswal, Y. Yamazaki (2012)
Nomenclature report on rice WRKY's - Conflict regarding gene names and its solutionRice, 5
-
M. Oirdi, Taha Rahman, Luciano Rigano, A. Hadrami, M. Rodríguez, F. Daayf, A. Vojnov, K. Bouarab (2011)
Botrytis cinerea Manipulates the Antagonistic Effects between Immune Pathways to Promote Disease Development in Tomato[C][W][OA]Plant Cell, 23
-
R. Jonge, H. Esse, A. Kombrink, T. Shinya, Yoshitake Desaki, R. Bours, S. Krol, N. Shibuya, M. Joosten, B. Thomma (2010)
Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in PlantsScience, 329
-
Srinivasachary, L. Willocquet, S. Savary (2011)
Resistance to rice sheath blight (Rhizoctonia solani Kühn) [(teleomorph: Thanatephorus cucumeris (A.B. Frank) Donk.] disease: current status and perspectivesEuphytica, 178
-
Yanjun Kou, Shiping Wang (2010)
Broad-spectrum and durability: understanding of quantitative disease resistance.Current opinion in plant biology, 13 2
-
P. Manosalva, R. Davidson, B. Liu, Xiaoyuan Zhu, S. Hulbert, H. Leung, J. Leach (2008)
A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice1[W][OA]Plant Physiology, 149
-
Z. Fu, Shunping Yan, A. Saleh, Wei Wang, J. Ruble, Nodoka Oka, Rajinikanth Mohan, Steven Spoel, Y. Tada, N. Zheng, Xinnian Dong (2012)
NPR3 and NPR4 are receptors for the immune signal salicylic acid in plantsNature, 486
-
Y Sato, H Takehisa, K Kamatsuki, H Minami, N Namiki, H Ikawa, H Ohyanagi, K Sugimoto, BA Antonio, Y Nagamura (2013)
Nucleic acids research -
K. Jung, G. An (2012)
Application of MapMan and RiceNet drives systematic analyses of the early heat stress transcriptome in rice seedlingsJournal of Plant Biology, 55
-
C. Zipfel (2014)
Plant pattern-recognition receptors.Trends in immunology, 35 7
-
Zhibing Lai, T. Mengiste (2013)
Genetic and cellular mechanisms regulating plant responses to necrotrophic pathogens.Current opinion in plant biology, 16 4
-
S. Chisholm, G. Coaker, B. Day, B. Staskawicz (2006)
Host-Microbe Interactions: Shaping the Evolution of the Plant Immune ResponseCell, 124
-
Ling Han, Guojing Li, Kwang-Yeol Yang, Guohong Mao, Ruigang Wang, Yidong Liu, Shuqun Zhang (2010)
Mitogen-activated protein kinase 3 and 6 regulate Botrytis cinerea-induced ethylene production in Arabidopsis.The Plant journal : for cell and molecular biology, 64 1
-
P. Okubara, M. Dickman, A. Blechl (2014)
Molecular and genetic aspects of controlling the soilborne necrotrophic pathogens Rhizoctonia and Pythium.Plant science : an international journal of experimental plant biology, 228
-
Yutaka Sato, H. Takehisa, Kaori Kamatsuki, H. Minami, N. Namiki, H. Ikawa, Hajime Ohyanagi, K. Sugimoto, B. Antonio, Y. Nagamura (2012)
RiceXPro Version 3.0: expanding the informatics resource for rice transcriptomeNucleic Acids Research, 41
-
John Moore, G. Loake, Steven Spoel (2011)
Transcription Dynamics in Plant ImmunityPlant Cell, 23
-
A. Delteil, Enrico Gobbato, B. Cayrol, J. Estevan, C. Michel-Romiti, A. Diévart, T. Kroj, J. Morel (2016)
Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungusBMC Plant Biology, 16
-
T. Mengiste (2012)
Plant immunity to necrotrophs.Annual review of phytopathology, 50
-
K. Molla, S. Karmakar, P. Chanda, Satabdi Ghosh, S. Sarkar, S. Datta, K. Datta (2013)
Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice.Molecular plant pathology, 14 9
-
P. Taheri, S. Tarighi (2011)
Cytomolecular aspects of rice sheath blight caused by Rhizoctonia solaniEuropean Journal of Plant Pathology, 129
-
A. Pitzschke (2015)
Modes of MAPK substrate recognition and control.Trends in plant science, 20 1
-
Haihua Wang, Jiao Meng, X. Peng, Xin-ke Tang, Pinglan Zhou, Jianhua Xiang, Xiaobo Deng (2015)
Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blightPlant Molecular Biology, 89
-
Takeo Shimizu, T. Nakano, Daisuke Takamizawa, Yoshitake Desaki, Naoko Ishii-Minami, Y. Nishizawa, E. Minami, K. Okada, H. Yamane, H. Kaku, N. Shibuya (2010)
Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in riceThe Plant Journal, 64
-
T. Asai, Guillaume Tena, J. Plotnikova, M. Willmann, W. Chiu, L. Gómez-Gómez, T. Boller, F. Ausubel, J. Sheen (2002)
MAP kinase signalling cascade in Arabidopsis innate immunityNature, 415
-
Rui Wang, Liaoxun Lu, Xuebiao Pan, Zongliang Hu, Fei Ling, Yan Yan, Yemao Liu, Yongjun Lin (2014)
Functional analysis of OsPGIP1 in rice sheath blight resistancePlant Molecular Biology, 87
-
P. Taheri, S. Tarighi (2010)
Riboflavin induces resistance in rice against Rhizoctonia solani via jasmonate-mediated priming of phenylpropanoid pathway.Journal of plant physiology, 167 3
-
Peijian Cao, K. Jung, Daeseok Choi, D. Hwang, Jun Zhu, P. Ronald (2012)
The Rice Oligonucleotide Array Database: an atlas of rice gene expressionRice, 5
-
R. Wise, M. Moscou, A. Bogdanove, S. Whitham (2007)
Transcript profiling in host-pathogen interactions.Annual review of phytopathology, 45
-
R. Venu, Yulin Jia, M. Gowda, M. Jia, C. Jantasuriyarat, E. Stahlberg, Huameng Li, Andrew Rhineheart, P. Boddhireddy, Pratibha Singh, Neil Rutger, D. Kudrna, R. Wing, J. Nelson, Guo‐Liang Wang (2007)
RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infectionMolecular Genetics and Genomics, 278
-
G. Eizenga, F. Lee, J. Rutger (2002)
Screening Oryza Species Plants for Rice Sheath Blight Resistance.Plant disease, 86 7
-
John Withers, Xinnian Dong (2016)
Posttranslational Modifications of NPR1: A Single Protein Playing Multiple Roles in Plant Immunity and PhysiologyPLoS Pathogens, 12
-
(2006)
The plant immune system -
Md Hossain, O. Tze, K. Nadarajah, K. Jena, Md Bhuiyan, W. Ratnam (2014)
Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solaniCanadian Journal of Plant Pathology, 36
-
Bryan Thines, Leron Katsir, M. Melotto, Yajie Niu, A. Mandaokar, Guanghui Liu, K. Nomura, S. He, G. Howe, J. Browse (2007)
JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signallingNature, 448
-
Zhihua Wen, Zeng Yuxiang, Zhi-juan Ji, Changdeng Yang (2015)
Mapping quantitative trait loci for sheath blight disease resistance in Yangdao 4 rice.Genetics and molecular research : GMR, 14 1
-
Oliver Windram, P. Madhou, Stuart McHattie, Claire Hill, Richard Hickman, Emma Cooke, Dafyd Jenkins, Christopher Penfold, L. Baxter, E. Breeze, S. Kiddle, Johanna Rhodes, S. Atwell, D. Kliebenstein, Youn-sung Kim, O. Stegle, K. Borgwardt, Cunjin Zhang, A. Tabrett, Roxane Legaie, Jonathan Moore, B. Finkenstadt, D. Wild, A. Mead, D. Rand, J. Beynon, S. Ott, V. Buchanan-Wollaston, K. Denby (2012)
Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis[C][W][OA]Plant Cell, 24
-
Mathias Schuetz, Anika Benske, Rebecca Smith, Yoichiro Watanabe, Y. Tobimatsu, J. Ralph, T. Demura, B. Ellis, L. Samuels (2014)
Laccases Direct Lignification in the Discrete Secondary Cell Wall Domains of Protoxylem1[W][OPEN]Plant Physiology, 166
-
Mitch Harkenrider, Rita Sharma, D. Vleesschauwer, L. Tsao, Xuting Zhang, M. Chern, Patrick Canlas, S. Zuo, P. Ronald (2016)
Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal PathogensPLoS ONE, 11
-
D. Cosgrove (2005)
Growth of the plant cell wallNature Reviews Molecular Cell Biology, 6
-
Andrea Gust, R. Willmann, Yoshitake Desaki, H. Grabherr, T. Nürnberger (2012)
Plant LysM proteins: modules mediating symbiosis and immunity.Trends in plant science, 17 8
-
Taha Rahman, M. Oirdi, Rocío González-Lamothe, K. Bouarab (2012)
Necrotrophic pathogens use the salicylic acid signaling pathway to promote disease development in tomato.Molecular plant-microbe interactions : MPMI, 25 12
-
A. Basu, Sreeparna Chowdhury, T. Chaudhuri, S. Kundu (2016)
Differential behaviour of sheath blight pathogen Rhizoctonia solani in tolerant and susceptible rice varieties before and during infectionPlant Pathology, 65
-
XJ Chen, Y Chen, LN Zhang, B Xu, JH Zhang, ZX Chen, YH Tong, SM Zuo, JY Xu (2015)
Plant Dis -
Yellareddygari Skr, Reddy Ms, J. Kloepper, K. Lawrence, H. Fadamiro (2014)
Rice Sheath Blight: A Review of Disease and Pathogen Management ApproachesJournal of Plant Pathology & Microbiology, 5
-
R. Hückelhoven (2007)
Cell wall-associated mechanisms of disease resistance and susceptibility.Annual review of phytopathology, 45
-
Xue Xiang, Z. Cao, X. Zhang, Yin Wang, Yi Zhang, Zongxiang Chen, Xuebiao Pan, S. Zuo (2016)
Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.Plant disease, 100 8
-
A. Kushalappa, K. Yogendra, Shailesh Karre (2016)
Plant Innate Immune Response: Qualitative and Quantitative ResistanceCritical Reviews in Plant Sciences, 35
-
B. Thomma, T. Nürnberger, M. Joosten (2011)
Of PAMPs and Effectors: The Blurred PTI-ETI Dichotomy[OA]Plant Cell, 23
-
R. Bari, Jonathan Jones (2009)
Role of plant hormones in plant defence responsesPlant Molecular Biology, 69
-
Z. Fu, Xinnian Dong (2013)
Systemic acquired resistance: turning local infection into global defense.Annual review of plant biology, 64
-
Marianna Polesani, L. Bortesi, A. Ferrarini, A. Zamboni, Marianna Fasoli, C. Zadra, A. Lovato, M. Pezzotti, M. Delledonne, A. Polverari (2010)
General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine speciesBMC Genomics, 11
-
A. Chini, Sandra Fonseca, Guillermo Fernández, B. Adie, J. Chico, O. Lorenzo, G. García-Casado, I. López-Vidriero, F. Lozano, M. Ponce, J. Micol, R. Solano (2007)
The JAZ family of repressors is the missing link in jasmonate signallingNature, 448
-
Zhengli Wang, Qingqing Xiang, Ting Yang, Luquan Li, Jingli Yang, Hongong Li, Yu He, Yunhui Zhang, Qi Lu, Jialin Yu (2016)
Autoinducer-2 of Streptococcus mitis as a Target Molecule to Inhibit Pathogenic Multi-Species Biofilm Formation In Vitro and in an Endotracheal Intubation Rat ModelFrontiers in Microbiology, 7
-
X. Peng, Yao-jun Hu, Xin-ke Tang, Pinglan Zhou, Xiaobo Deng, Haihua Wang, Zejian Guo (2012)
Constitutive expression of rice WRKY30 gene increases the endogenous jasmonic acid accumulation, PR gene expression and resistance to fungal pathogens in ricePlanta, 236
-
W. Suharti, A. Nose, Shao-hui Zheng (2016)
Metabolomic study of two rice lines infected by Rhizoctonia solani in negative ion mode by CE/TOF-MS.Journal of plant physiology, 206
-
Ayako Miya, Premkumar Albert, T. Shinya, Yoshitake Desaki, K. Ichimura, K. Shirasu, Y. Narusaka, N. Kawakami, H. Kaku, N. Shibuya (2007)
CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in ArabidopsisProceedings of the National Academy of Sciences, 104
-
Wende Liu, Jinling Liu, L. Triplett, J. Leach, Guo‐Liang Wang (2014)
Novel insights into rice innate immunity against bacterial and fungal pathogens.Annual review of phytopathology, 52
-
L. Willocquet, M. Noel, R. Hamilton, S. Savary (2011)
Susceptibility of rice to sheath blight: an assessment of the diversity of rice germplasm according to genetic groups and morphological traitsEuphytica, 183
-
XB Pan, ZX Chen, JY Xu, YH Tong, ZB Wang, XY Pan (1997)
The effect of different methods of inoculation and investigation on genetic research of resistance to rice sheath blightJ Jiangsu Agr Coll, 18
-
C. Pieterse, A. Leon-Reyes, S. Ent, S. Wees (2009)
Networking by small-molecule hormones in plant immunity.Nature chemical biology, 5 5
-
Kian Hématy, Candice Cherk, S. Somerville (2009)
Host-pathogen warfare at the plant cell wall.Current opinion in plant biology, 12 4
- Publisher
- Springer Journals
- Copyright
- Copyright © 2018 by Korean Society of Plant Biologists and Springer-Verlag GmbH Germany, part of Springer Nature
- Subject
- Life Sciences; Plant Sciences; Plant Breeding/Biotechnology; Plant Genetics and Genomics; Plant Systematics/Taxonomy/Biogeography; Plant Ecology
- ISSN
- 1226-9239
- eISSN
- 1867-0725
- DOI
- 10.1007/s12374-017-0209-6
- Publisher site
- See Article on Publisher Site
Abstract
Rice sheath blight (SB), caused by Rhizoctonia solani (R. solani), is a major threat to rice production worldwide. The molecular mechanisms of the SB resistance in rice are poorly understood. The transcriptomes of the SBresistant rice cultivar YSBR1 and the susceptible cultivar Lemont were analyzed after R. solani infection. A total of 7624 differentially expressed genes (DEGs) were identified at one or more timepoints in a cultivar. 5526 and 5618 DEGs were differentially expressed in Lemont and YSBR1, respectively. YSBR1 exhibited stronger and earlier transcriptional response to R. solani than Lemont. Gene ontology enrichment analysis revealed that genes that encode cell wall-modifying and glycosyl-degrading enzymes or anti-microbial proteins were specifically induced in YSBR1 at 6 hpi. MapMan analysis revealed that more DEGs related with cell wall, β-glucanses, respiratory burst, phenylpropanoids and lignin were highly induced by R. solani in YSBR1 than in Lemont. The results also showed that receptor-like kinases and jasmonic acid signaling may play important roles in host resistance to R. solani. This study highlights potential candidate genes and signaling pathways involved in rice sheath resistance and can help to further clarify the mechanistic events underlying resistance and susceptibility to R. solani.
Journal
Journal of Plant Biology – Springer Journals
Published: Jun 2, 2018