Access the full text.
Sign up today, get DeepDyve free for 14 days.
A Sturn, J Quackenbush, Z Trajanoski (2002)
Genesis: cluster analysis of microarray dataBioinformatics, 18
R Li, AW Murray (1991)
Feedback control of mitosis in budding yeastCell, 66
P-L Liu, Q Wan, Y-P Guo, J Yang, G-Y Rao (2012)
Phylogeny of the genus Chrysanthemum L.: evidence from single-copy nuclear gene and chloroplast DNA sequencesPLoS ONE, 7
SP Pandey, IE Somssich (2009)
The role of WRKY transcription factors in plant immunityPlant Physiol, 150
AJ Afzal, AJ Wood, DA Lightfoot (2008)
Plant receptor-like serine threonine kinases: roles in signaling and plant defenseMol Plant Microbe Interact, 21
M Catoni, L Miozzi, V Fiorilli, L Lanfranco, GP Accotto (2009)
Comparative analysis of expression profiles in shoots and roots of tomato systemically infected by Tomato spotted wilt virus reveals organ-specific transcriptional responsesMol Plant Microbe In, 22
Y Yang, C Ma, Y Xu, Q Wei, M Imtiaz, H Lan, S Gao, L Cheng, M Wang, Z Fei (2014)
A zinc finger protein regulates flowering time and abiotic stress tolerance in chrysanthemum by modulating gibberellin biosynthesisPlant Cell, 23
HQ Dang, NQ Tran, SS Gill, R Tuteja, N Tuteja (2011)
A single subunit MCM6 from pea promotes salinity stress tolerance without affecting yieldPlant Mol Biol, 76
A García-Marcos, R Pacheco, J Martiáñez, P González-Jara, JR Díaz-Ruíz, F Tenllado (2009)
Transcriptional changes and oxidative stress associated with the synergistic interaction between Potato virus X and Potato virus Y and their relationship with symptom expressionMol Plant Microbe Interact, 22
M Tucker, MA Valencia-Sanchez, RR Staples, J Chen, CL Denis, R Parker (2001)
The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiaeCell, 104
C Zipfel (2008)
Pattern-recognition receptors in plant innate immunityCurr Opin Immunol, 20
A Schweighofer, H Hirt, I Meskiene (2004)
Plant PP2C phosphatases: emerging functions in stress signalingTrends Plant Sci, 9
H Li, S Chen, A Song, H Wang, W Fang, Z Guan, J Jiang, F Chen (2014)
RNA-Seq derived identification of differential transcription in the chrysanthemum leaf following inoculation with Alternaria tenuissimaBMC Genomic, 15
W Yang, BJ Glover, GY Rao, J Yang (2006)
Molecular evidence for multiple polyploidization and lineage recombination in the Chrysanthemum indicum polyploid complex (Asteraceae)New Phytol, 171
F Licausi, M Ohme-Takagi, P Perata (2013)
APETALA2/ethylene responsive factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programsNew Phytol, 199
N Verma, A Sharma, R Ram, V Hallan, A Zaidi, I Garg (2003)
Detection, identification and incidence of Chrysanthemum B carlavirus in chrysanthemum in IndiaCrop Protection, 22
L Ding, FD Chen, NJ Teng, WM Fang (2008)
Analysis of genetic diversity of cultivars in Dendranthema × grandiflorum based on POD and SOD isozymeScientia Agricultura Sinica, 4
W Liang, C Li, F Liu, H Jiang, S Li, J Sun, X Wu, C Li (2008)
The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responsesCell Res, 19
N Courtney-Gutterson, C Napoli, C Lemieux, A Morgan, E Firoozabady, KE Robinson (1994)
Modification of flower color in florist’s Chrysanthemum: production of a white-flowering variety through molecular geneticsNat Biotech, 12
T Li, Guo Je, Y Li, H Ning, X Sun, C Zheng (2013)
Genetic diversity assessment of chrysanthemum germplasm using conserved DNA-derived polymorphism markersSci Hort, 162
A Miya, P Albert, T Shinya, Y Desaki, K Ichimura, K Shirasu, Y Narusaka, N Kawakami, H Kaku, N Shibuya (2007)
CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in ArabidopsisProc Natl Acad Sci, 104
Z Tong, B Hong, Y Yang, Q Li, N Ma, C Ma, J Gao (2009)
Overexpression of two chrysanthemum DgDREB1 group genes causing delayed flowering or dwarfism in ArabidopsisPlant Mol Biol, 71
DR Holding, PS Springer (2002)
The Arabidopsis gene PROLIFERA is required for proper cytokinesis during seed developmentPlanta, 214
S Chen, H Miao, F Chen, B Jiang, J Lu, W Fang (2009)
Analysis of expressed sequence tags (ESTs) collected from the inflorescence of ChrysanthemumPlant Mol Biol Report, 27
V Chinnusamy, J-K Zhu (2009)
Epigenetic regulation of stress responses in plantsCurr Opin Plant Biol, 12
SL Murray, RA Ingle, LN Petersen, KJ Denby (2007)
Basal resistance against Pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance proteinMol Plant Microbe Interact, 20
RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed (2003)
Summaries of Affymetrix GeneChip probe level dataNucl Acids Res, 31
JC Ambrose, R Cyr (2007)
The kinesin ATK5 functions in early spindle assembly in ArabidopsisPlant Cell, 19
PS Springer, DR Holding, A Groover, C Yordan, RA Martienssen (2000)
The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G (1) phase and is required maternally for early Arabidopsis developmentDevelopment, 127
Y Wang, H Huang, Y Ma, J Fu, L Wang, S Dai (2014)
Construction and de novo characterization of a transcriptome of Chrysanthemum lavandulifolium: analysis of gene expression patterns in floral bud emergencePlant Cell Tissue Organ Cult (PCTOC), 116
PL Rodriguez (1998)
Protein phosphatase 2C (PP2C) function in higher plantsPlant Mol Biol, 38
C Workman, LJ Jensen, H Jarmer, R Berka, L Gautier, HB Nielser, H-H Saxild, C Nielsen, S Brunak, S Knudsen (2002)
A new non-linear normalization method for reducing variability in DNA microarray experimentsGenome Biol, 3
Y Xu, S Gao, Y Yang, M Huang, L Cheng, Q Wei, Z Fei, J Gao, B Hong (2013)
Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stressBMC Genom, 14
WK Cho, Y Jo, K-M Jo, K-H Kim (2013)
A current overview of two viroids that infect chrysanthemums: Chrysanthemum stunt viroid and Chrysanthemum chlorotic mottle viroidViruses, 5
A Hitmi, A Coudret, C Barthomeuf (2000)
The production of pyrethrins by plant cell and tissue cultures of Chrysanthemum cinerariaefolium and Tagetes speciesCrit Rev Biochem Mol Biol, 35
Q Lang, C Jin, X Gao, J Feng, S Chen, L Lai, J Chen (2011)
Profiling of Cucumber Mosaic Virus responsive mRNAs in tomato using Paraflo microfluidics microarraysJ Nanosci Nanotech, 11
MC Rentel, D Lecourieux, F Ouaked, SL Usher, L Petersen, H Okamoto, H Knight, SC Peck, CS Grierson, H Hirt (2004)
OXI1 kinase is necessary for oxidative burst-mediated signalling in ArabidopsisNature, 427
L Palmieri, N Picault, R Arrigoni, E Besin, F Palmieri, M Hodges (2008)
Molecular identification of three Arabidopsis thaliana mitochondrial dicarboxylate carrier isoforms: organ distribution, bacterial expression, reconstitution into liposomes and functional characterizationBiochem J, 410
JT Ascencio-Ibáñez, R Sozzani, T-J Lee, T-M Chu, RD Wolfinger, R Cella, L Hanley-Bowdoin (2008)
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infectionPlant Physiol, 148
J An, A Song, Z Guan, J Jiang, F Chen, W Lou, W Fang, Z Liu, S Chen (2014)
The over-expression of Chrysanthemum crassum CcSOS1 improves the salinity tolerance of chrysanthemumMol Biol Rep, 41
H Wang, J Jiang, S Chen, X Qi, H Peng, P Li, A Song, Z Guan, W Fang, Y Liao (2013)
Next-generation sequencing of the Chrysanthemum nankingense (Asteraceae) transcriptome permits large-scale unigene assembly and SSR marker discoveryPLoS ONE, 8
BK Tye (1999)
MCM proteins in DNA replicationAnnu Rev Biochem, 68
J Fu, L Wang, Y Wang, L Yang, Y Yang, S Dai (2014)
Photoperiodic control of FT-like gene ClFT initiates flowering in Chrysanthemum lavandulifoliumPlant Physiol Biochem, 74
K Meyer, MP Leube, E Grill (1994)
A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thalianaScience, 264
SA Whitham, S Quan, HS Chang, B Cooper, B Estes, T Zhu, X Wang, YM Hou (2003)
Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plantsPlant J, 33
GK Agrawal, R Rakwal, S Tamogami, M Yonekura, A Kubo, H Saji (2002)
Chitosan activates defense/stress response (s) in the leaves of Oryza sativa seedlingsPlant Physiol Biochem, 40
A Conesa, S Götz, JM García-Gómez, J Terol, M Talón, M Robles (2005)
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchBioinformatics, 21
N Journot-Catalino, IE Somssich, D Roby, T Kroj (2006)
The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thalianaPlant Cell, 18
PS Springer, WR McCombie, V Sundaresan, RA Martienssen (1995)
Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in ArabidopsisScience, 268
TJ Bruce, MC Matthes, JA Napier, JA Pickett (2007)
Stressful “memories” of plants: evidence and possible mechanismsPlant Sci, 173
P Liu, S Chen, A Song, S Zhao, W Fang, Z Guan, Y Liao, J Jiang, F Chen (2014)
A putative high affinity phosphate transporter, CmPT1, enhances tolerance to Pi deficiency of chrysanthemumBMC Plant Biol, 14
R Marathe, Z Guan, R Anandalakshmi, H Zhao, S Dinesh-Kumar (2004)
Study of Arabidopsis thaliana resistome in response to Cucumber mosaic virus infection using whole genome microarrayPlant Mol Biol, 55
C Gu, S Chen, Z Liu, H Shan, H Luo, Z Guan, F Chen (2011)
Reference gene selection for quantitative real-time PCR in Chrysanthemum subjected to biotic and abiotic stressMol Biotechnol, 49
Y Jo, K-M Jo, S-H Park, K-H Kim, WK Cho (2014)
Transcriptomic landscape of chrysanthemums infected by Chrysanthemum stunt viroidPlant Omics, 7
N Blüthgen, K Brand, B Čajavec, M Swat, H Herzel, D Beule (2005)
Biological profiling of gene groups utilizing gene ontologyGenome Inform, 16
M-C Caillaud, L Paganelli, P Lecomte, L Deslandes, M Quentin, Y Pecrix, M Bris, N Marfaing, P Abad, B Favery (2009)
Spindle assembly checkpoint protein dynamics reveal conserved and unsuspected roles in plant cell divisionPLoS ONE, 4
GK Smyth (2004)
Linear models and empirical bayes methods for assessing differential expression in microarray experimentsStat Appl Genet Mol Biol
A Sánchez-Vallet, JR Mesters, BP Thomma (2014)
The battle for chitin recognition in plant–microbe interactionsFEMS Microbiol Rev
J Wan, X-C Zhang, D Neece, KM Ramonell, S Clough, Kim S-y, MG Stacey, G Stacey (2008)
A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in ArabidopsisPlant Cell Online, 20
L Hanley-Bowdoin, SB Settlage, BM Orozco, S Nagar, D Robertson (1999)
Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulationCrit Rev Plant Sci, 18
H Ren, F Zhu, C Zheng, X Sun, W Wang, H Shu (2013)
Transcriptome analysis reveals genes related to floral development in chrysanthemum responsive to photoperiodsBiochem Genet, 51
H He, N Yajing, C Huawen, T Xingjiao, X Xinli, Y Weilun, D Silan (2012)
cDNA-AFLP analysis of salt-inducible genes expression in Chrysanthemum lavandulifolium under salt treatmentJ Plant Physiol, 169
L Hanley-Bowdoin, ER Bejarano, D Robertson, S Mansoor (2013)
Geminiviruses: masters at redirecting and reprogramming plant processesNat Rev Microbiol, 11
A Song, X Zhu, F Chen, H Gao, J Jiang, S Chen (2014)
A chrysanthemum heat shock protein confers tolerance to abiotic stressInt J Mol Sci, 15
A Song, J An, Z Guan, J Jiang, F Chen, W Lou, W Fang, Z Liu, S Chen (2014)
The constitutive expression of a two transgene construct enhances the abiotic stress tolerance of chrysanthemumPlant Physiol Biochem, 80
RE Timme, JV Kuehl, JL Boore, RK Jansen (2007)
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeatsAm J Bot, 94
J Lu, Z-X Du, J Kong, L-N Chen, Y-H Qiu, G-F Li, X-H Meng, S-F Zhu (2012)
Transcriptome analysis of Nicotiana tabacum infected by Cucumber mosaic virus during systemic symptom developmentPLoS ONE, 7
L-Y Wu, H-Z Gao, X-L Wang, J-H Ye, J-L Lu, Y-R Liang (2010)
Analysis of chemical composition of Chrysanthemum indicum flowers by GC/MS and HPLCJ Med Plants Res, 4
The chrysanthemum is one of popular flowers in the world and a host for several viruses. So far, molecular interaction studies between the chrysanthemum and viruses are limited. In this study, we carried out a transcriptome analysis of chrysanthemum in response to three different viruses including Cucumber mosaic virus (CMV), Tomato spotted wilt virus (TSWV) and Potato virus X (PVX). A chrysanthemum 135K microarray derived from expressed sequence tags was successfully applied for the expression profiles of the chrysanthemum at early stage of virus infection. Finally, we identified a total of 125, 70 and 124 differentially expressed genes (DEGs) for CMV, TSWV and PVX, respectively. Many DEGs were virus specific; however, 33 DEGs were commonly regulated by three viruses. Gene ontology (GO) enrichment analysis identified a total of 132 GO terms, and of them, six GO terms related stress response and MCM complex were commonly identified for three viruses. Several genes functioning in stress response such as chitin response and ethylene mediated signaling pathway were up-regulated indicating their involvement in establishment of host immune system. In particular, TSWV infection significantly down-regulated genes related to DNA metabolic process including DNA replication, chromatin organization, histone modification and cytokinesis, and they are mostly targeted to nucleosome and MCM complex. Taken together, our comparative transcriptome analysis revealed several genes related to hormone mediated viral stress response and DNA modification. The identified chrysanthemums genes could be good candidates for further functional study associated with resistant to various plant viruses.
Plant Molecular Biology – Springer Journals
Published: Apr 23, 2015
Access the full text.
Sign up today, get DeepDyve free for 14 days.