Characterization of the 3′-terminal nucleotide sequence of two Korean isolates of Daphne virus S support its placement as a distinct species of the genus Carlavirus

Characterization of the 3′-terminal nucleotide sequence of two Korean isolates of Daphne virus... This study determined the 3′-terminal nucleotide sequences of two Korean isolates of Daphne virus S (DVS), a tentative member of the genus Carlavirus , causing leaf distortion and chlorotic spot disease symptoms in daphne plants. The 3′-terminal 1,465 nucleotide sequences of the two isolates contained two open reading frames coding for proteins of 36 kDa viral coat protein (CP) and 12 kDa from the 5′–3′ end, which is a typical genome structure of the 3′-terminal region of carlaviruses. Both DVS isolates were 98.1% and 93.6% amino acid identical in the CP and 12 kDa, respectively. The CP gene of DVS shares 25.2–55.2% and 42.9–56.1% similarities with that of 19 other carlaviruses at the amino acid and nucleotide levels, respectively. The 3′-proximal 12 kDa gene of DVS shares 20.2–57.8% amino acid identities with that of 18 other members of the genus. The 3′ noncoding region of DVS consists of 73 nucleotides with long excluding poly A tract, and shares 69.1–77.1% identities to the known carlaviruses. In the phylogenetic analyses of the two proteins, DVS was closely related to Helenium virus S and Chrysanthemum virus B . This is the first sequence information for the DVS, and further confirms the classification of DVS as a distinct member of the genus Carlavirus . http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Archives of Virology Springer Journals

Characterization of the 3′-terminal nucleotide sequence of two Korean isolates of Daphne virus S support its placement as a distinct species of the genus Carlavirus

Loading next page...
 
/lp/springer_journal/characterization-of-the-3-terminal-nucleotide-sequence-of-two-korean-A2d6RopVMq
Publisher
Springer-Verlag
Copyright
Copyright © 2003 by Springer-Verlag/Wien
Subject
LifeSciences
ISSN
0304-8608
eISSN
1432-8798
D.O.I.
10.1007/s00705-003-0161-2
Publisher site
See Article on Publisher Site

Abstract

This study determined the 3′-terminal nucleotide sequences of two Korean isolates of Daphne virus S (DVS), a tentative member of the genus Carlavirus , causing leaf distortion and chlorotic spot disease symptoms in daphne plants. The 3′-terminal 1,465 nucleotide sequences of the two isolates contained two open reading frames coding for proteins of 36 kDa viral coat protein (CP) and 12 kDa from the 5′–3′ end, which is a typical genome structure of the 3′-terminal region of carlaviruses. Both DVS isolates were 98.1% and 93.6% amino acid identical in the CP and 12 kDa, respectively. The CP gene of DVS shares 25.2–55.2% and 42.9–56.1% similarities with that of 19 other carlaviruses at the amino acid and nucleotide levels, respectively. The 3′-proximal 12 kDa gene of DVS shares 20.2–57.8% amino acid identities with that of 18 other members of the genus. The 3′ noncoding region of DVS consists of 73 nucleotides with long excluding poly A tract, and shares 69.1–77.1% identities to the known carlaviruses. In the phylogenetic analyses of the two proteins, DVS was closely related to Helenium virus S and Chrysanthemum virus B . This is the first sequence information for the DVS, and further confirms the classification of DVS as a distinct member of the genus Carlavirus .

Journal

Archives of VirologySpringer Journals

Published: Oct 1, 2003

There are no references for this article.

You’re reading a free preview. Subscribe to read the entire article.


DeepDyve is your
personal research library

It’s your single place to instantly
discover and read the research
that matters to you.

Enjoy affordable access to
over 12 million articles from more than
10,000 peer-reviewed journals.

All for just $49/month

Explore the DeepDyve Library

Unlimited reading

Read as many articles as you need. Full articles with original layout, charts and figures. Read online, from anywhere.

Stay up to date

Keep up with your field with Personalized Recommendations and Follow Journals to get automatic updates.

Organize your research

It’s easy to organize your research with our built-in tools.

Your journals are on DeepDyve

Read from thousands of the leading scholarly journals from SpringerNature, Elsevier, Wiley-Blackwell, Oxford University Press and more.

All the latest content is available, no embargo periods.

See the journals in your area

DeepDyve Freelancer

DeepDyve Pro

Price
FREE
$49/month

$360/year
Save searches from
Google Scholar,
PubMed
Create lists to
organize your research
Export lists, citations
Read DeepDyve articles
Abstract access only
Unlimited access to over
18 million full-text articles
Print
20 pages/month
PDF Discount
20% off