Access the full text.
Sign up today, get DeepDyve free for 14 days.
J Chiapella (2007)
A molecular phylogenetic study of Deschampsia (Poaceae: Aveneae) inferred from nuclear ITS and plastid trnL sequence data: support for the recognition of Avenella and VahlodeaTaxon, 56
KJ Chwedorzewska (2006)
Preliminary genetic study on species from genus Deschampsia from Antarctic (King George I.) and Arctic (Spitsbergen)Polar Biosci, 19
R Holderegger, I Stehlik, RI Lewis Smith, RJ Abbott (2003)
Populations of Antarctic hairgrass (Deschampsia antarctica) show low genetic diversityArct Antarct Alp Res, 35
AV Vershinin, T Schwarzacher, JS Heslop-Harrison (1995)
The large-scale genomic organization of repetitive DNA families at the telomeres of rye chromosomesPlant Cell, 7
LA Bravo, N Ulloa, GE Zuñiga (2001)
Cold resistance in Antarctic angiospermsPhysiol Plant, 111
J Ištvánek, M Jaroš, A Křenek, J Řepková (2014)
Genome assembly and annotation for red clover (Trifolium pratense; Fabaceae)Am J Bot, 101
K Emadzade, T-S Jang, J Macas (2014)
Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae)Ann Bot, 114
B Grebenstein, O Grebenstein, W Sauer, V Hemleben (1996)
Distribution and complex organization of satellite DNA sequences in Aveneae speciesGenome, 39
R Aversano, F Contaldi, MR Ercolano (2015)
The Solanum commersonii Genome sequence provides insights into adaptation to stress conditions and genome evolution of wild potato relativesPlant Cell, 27
W Wang, L Ma, H Becher (2016)
Astonishing 35S rDNA diversity in the gymnosperm species Cycas revoluta ThunbChromosoma, 125
M Wouw, P Dijk, A Huiskes (2008)
Regional genetic diversity patterns in Antarctic hairgrass (Deschampsia antarctica Desv.)J Biogeogr, 35
J Jiang, SH Hulbert, BS Gill, DC Ward (1996)
Interphase fluorescence in situ hybridization mapping: a physical mapping strategy for plant species with large complex genomesMol Gen Genet, 252
IY Parnikoza, NY Miryuta, DN Maidanyuk (2007)
Habitat and leaf cytogenetic characteristics of Deschampsia antarctica Desv. in the Maritime AntarcticaPolar Sci, 1
A Lane Rayburn, BS Gill (1986)
Isolation of a D-genome specific repeated DNA sequence from Aegilops squarrosaPlant Mol Biol Rep, 4
I López-Flores, MA Garrido-Ramos (2012)
The repetitive DNA content of eukaryotic genomesGenome Dyn, 7
K Fry, W Salser (1977)
Nucleotide sequences of HS-alpha satellite DNA from kangaroo rat Dipodomys ordii and characterization of similar sequences in other rodentsCell, 12
S Sharma, SN Raina (2005)
Organization and evolution of highly repeated satellite DNA sequences in plant chromosomesCytogenet Genome Res, 109
P Montiel, A Smith, D Keiller (1999)
Photosynthetic responses of selected Antarctic plants to solar radiation in the southern maritime AntarcticPolar Res, 18
Đ Ugarković (2008)
Satellite DNA libraries and centromere evolutionThe Open Evolution Journal, 2
SL Mosyakin, LG Bezusko, AS Mosyakin (2007)
Origins of native vascular plants of Antarctica: comments from a historical phytogeography viewpointTsitol Genet, 41
AS Reddy, MC Kiefer-Meyer, M Delseny (1993)
Characterization of new variants of a satellite DNA from Oryza officinalis, specific for the CC genome of wild riceGenome, 36
A Brandes, MS Röder, MW Ganal (1995)
Barley telomeres are associated with two different types of satellite DNA sequencesChromosome Res, 3
S Kubis, T Schmidt, JS Heslop-Harrison (1998)
Repetitive DNA elements as a major component of plant genomesAnn Bot, 82
EV Evtushenko, AV Vershinin (2010)
Heterogeneous organization of a tandem repeat family in subtelomeric heterochromatin of ryeRuss J Genet, 46
K Alix, F-C Baurens, F Paulet (1998)
Isolation and characterization of a satellite DNA family in the Saccharum complexGenome, 41
M Plohl, N Meštrović, B Mravinac (2012)
Satellite DNA evolutionGenome Dyn, 7
UP John, RM Polotnianka, KA Sivakumaran (2009)
Ice recrystallization inhibition proteins (IRIPs) and freeze tolerance in the cryophilic Antarctic hair grass Deschampsia antarctica E. DesvPlant Cell Environ, 32
M King (1995)
Species evolution: the role of chromosome change
V Komarkova, S Poncet, J Poncet (1985)
Two native Antarctic vascular plants, Deschampsia antarctica and Colobanthus quitensis: a new southernmost locality and other localities in the Antarctic Peninsula areaArctic Alpine Res, 17
J Macas, T Mészáros, M Nouzová (2002)
PlantSat: a specialized database for plant satellite repeatsBioinformatics, 18
T Schwarzacher (2003)
Meiosis, recombination and chromosomes: a review of gene isolation and fluorescent in situ hybridization data in plantsJ Exp Bot, 54
G Benson (1999)
Tandem repeats finder: a program to analyze DNA sequencesNucleic Acids Res, 27
RC Vieira, A Mantovani (1995)
Anatomia foliar de Deschampsia antarctica Desv. (Gramineae)Rev Brasil Bot, 18
V Hemleben, A Kovarik, RA Torres-Ruiz (2007)
Plant highly repeated satellite DNA: molecular evolution, distribution and use for identification of hybridsSyst Biodivers, 5
V Komarkova, S Poncet, J Poncet (1990)
Additional and revisited localities of vascular plants Deschampsia antarctica Desv. and Colobanthus quitensis (Kunth) Bartl. in the Antarctic Peninsula areaArctic Alpine Res, 22
J Dolezel, J Bartos, H Voglmayr, J Greilhuber (2003)
Nuclear DNA content and genome size of trout and humanCytometry A, 51
M Röser, G Winterfeld, E Döring, J Schneider (2014)
Chromosome evolution in grass tribes Aveneae/Poeae (Poaceae): insights from karyotype structure and molecular phylogenySchlechtendalia, 28
VK Tiwari, S Wang, T Danilova (2015)
Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5 mg of Aegilops geniculataPlant J, 84
MFL Derks, S Smit, L Salis (2015)
The genome of winter moth (Operophtera brumata) provides a genomic perspective on sexual dimorphism and phenologyGenome Biol Evol, 7
M Plohl (2005)
The species-specificity and evolution of satellite DNAs with emphasis on satellite DNAs in tenebrionid beetlesEntomol Croat, 9
AC Premoli, P Mathiasen, CM Acosta, VA Ramos (2012)
Phylogeographically concordant chloroplast DNA divergence in sympatric Nothofagus ss How deep can it be?New Phytol, 193
BG Murray, PJ Lange, AR Ferguson (2005)
Nuclear DNA variation, chromosome numbers and polyploidy in the endemic and indigenous grass flora of New ZealandAnn Bot, 96
P Sanmiguel, JL Bennetzen (1998)
Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposonsAnn Bot, 82
J Chiapella, FO Zuloaga (2010)
A Revision of Deschampsia, Avenella, and Vahlodea (Poaceae, Poeae, Airinae) in South AmericaAnn Mo Bot Gard, 97
B Grebenstein, O Grebenstein, W Sauer, V Hemleben (1995)
Characterization of a highly repeated DNA component of perennial oats (Helictotrichon, Poaceae) with sequence similarity to a A-genome-specific satellite DNA of rice (Oryza)Theor Appl Genet, 90
M Margulies, M Egholm, WE Altman (2005)
Genome sequencing in microfabricated high-density picolitre reactorsNature, 437
KK Stergianou (1989)
Habit differentiation and chromosome evolution in Pleione (Orchidaceae)Plant Syst Evol, 166
CT Ruhland, TA Day (2000)
Effects of ultraviolet-B radiation on leaf elongation, production and phenylpropanoid concentrations of Deschampsia antarctica and Colobanthus quitensis in AntarcticaPhysiol Plant, 109
MA Garrido-Ramos (2015)
Satellite DNA in Plants: more than Just RubbishCytogenet Genome Res, 146
EN Trifonov (1989)
The multiple codes of nucleotide sequencesBull Math Biol, 51
L Feitoza, M Guerra (2011)
Different types of plant chromatin associated with modified histones H3 and H4 and methylated DNAGenetica, 139
P Novák, P Neumann, J Macas (2010)
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing dataBMC Bioinform, 11
G Winterfeld, M Röser (2007)
Chromosomal localization and evolution of satellite DNAs and heterochromatin in grasses (Poaceae), especially tribe AveneaePlant Syst Evol, 264
AV Amosova, NL Bolsheva, TE Samatadze (2015)
Molecular cytogenetic analysis of Deschampsia antarctica Desv. (Poaceae), Maritime AntarcticPLoS ONE, 10
RB Flavell (1986)
Repetitive DNA and chromosome evolution in plantsPhilos Trans R Soc Lond B, 312
SE Vittorazzi, LB Lourenço, SM Recco-Pimentel (2014)
Long-time evolution and highly dynamic satellite DNA in leptodactylid and hylodid frogsBMC Genet, 15
C Bostock (1980)
A function for satellite DNA?Trends Biochem Sci, 5
A Křivánková, D Kopecký, Š Stočes (2017)
Repetitive DNA: a versatile tool for karyotyping in Festuca pratensis HudsCytogenet Genome Res, 151
ML González, JD Urdampilleta, M Fasanella (2016)
Distribution of rDNA and polyploidy in Deschampsia antarctica E. Desv. in Antarctic and Patagonic populationsPolar Biol, 39
M Metzlaff, W Troebner, F Baldauf (1986)
Wheat specific repetitive DNA sequences—construction and characterization of four different genomic clonesTheor Appl Genet, 72
M Gidekel, L Destefano-Beltrán, P García (2003)
Identification and characterization of three novel cold acclimation-responsive genes from the extremophile hair grass Deschampsia antarctica DesvExtremophiles, 7
DM Moore (1970)
Studies in Colobanthus Quitensis (Kunth) Bartl. and Deschampsia antarctica Desv. II. Taxonomy, distribution and relationshipsBr Antarct Surv Bull, 23
GA Dover (1986)
Molecular drive in multigene families: How biological novelties arise, spread and are assimilatedTrends Genet, 2
GE Crooks, G Hon, J-M Chandonia, SE Brenner (2004)
WebLogo: a sequence logo generatorGenome Res, 14
J Macas, P Neumann, A Navrátilová (2007)
Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatulaBMC Genom, 8
PG Wolf, EB Sessa, DB Marchant (2015)
An exploration into fern genome spaceGenome Biol Evol, 7
S Mehrotra, V Goyal (2014)
Repetitive sequences in plant nuclear DNA: types, distribution, evolution and functionGenom Proteom Bioinform, 12
MD Bennett, JB Smith, R Smith (1982)
DNA amounts of angiosperms from the Antarctic and South GeorgiaEnviron Exp Bot, 22
P Novák, P Neumann, J Pech (2013)
RepeatExplorer: a galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence readsBioinformatics, 29
E Sýkorová, J Fajkus, M Ito, K Fukui (2001)
Transition between two forms of heterochromatin at plant subtelomeresChromosome Res, 9
M Alberdi, LA Bravo, A Gutiérrez (2002)
Ecophysiology of Antarctic vascular plantsPhysiol Plant, 115
JC Lamb, T Danilova, MJ Bauer (2007)
Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomesGenetics, 175
DO Navrotska, MO Twardovska, IO Andreev (2014)
New forms of chromosome polymorphism in Deschampsia antarctica Desv. from the Argentine islands of the Maritime Antarctic regionUkrainian Antarct J, 13
T Schwarzacher, P Heslop-Harrison (2000)
Practical in situ hybridization
K Weising, H Nybom, M Pfenninger (2005)
DNA fingerprinting in plants: principles, methods, and applications
S Cardone, P Sawatani, P Rush (2008)
Karyological studies in Deschampsia antarctica Desv. (Poaceae)Polar Biol, 32
P Novák, L Ávila Robledillo, A Koblížková (2017)
TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short readsNucleic Acids Res
J Lee, Y Kang, SC Shin (2014)
Combined analysis of the chloroplast genome and transcriptome of the Antarctic vascular plant Deschampsia antarctica DesvPLoS ONE, 9
DA Levin (2002)
The role of chromosomal change in plant evolution
IY Parnikoza, DN Maidanuk, IA Kozeretska (2007)
Are Deschampsia antarctica Desv. and Colobanthus quitensis (Kunth) Bartl. migratory relicts?Tsitol Genet, 41
Deschampsia antactica E. Desv. is one of the only two native vascular plants of Antarctica, having a disjunct distribution with South America. Its presence in different environmental conditions turns it into an interesting evolution model, particularly for genomic evolutionary studies. The repetitive DNA is a genome component that cause important changes in genome size and chromosome organization, and therefore, its variation is very important in group’s delimitation. Some tandem repetitive DNA sequences, known as satellite DNA (satDNAs) are shared between many groups of Poaceae (e.g., of these are the CON1, CON2, COM1, and COM2 sequences) highlighting its evolutionary component. This study aims to identify, classify, and characterize repetitive elements in the D. antarctica genome by clustering analysis of genome sequences, focusing on the CON1, CON2, COM1, and COM2. Repetitive DNA represented about 73.3% of the D. antarctica genome. All studied populations presented loci for the studied satDNAs but the distribution pattern showed differences that seem to be related to the geographic distribution. The analysis of CON/COM sequences in D. antarctica contributes to the understanding of these elements in Poaceae genomes and highlights the importance of changes in chromosome organization of repetitive DNA in populations with fragmented geographical distribution. The distribution of such chromosome changes may both reflect the process of colonization of D. antarctica in Antarctica and explain some evolutionary processes of differentiation in Deschampsia species complex in the Patagonia, which is still unresolved with other DNA sequences.
Polar Biology – Springer Journals
Published: Oct 12, 2017
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.