Apple, from omics to systemic function

Apple, from omics to systemic function With complete sequencing of the ‘Golden Delicious’ genome, the transcriptome, proteome and metabolome have been fused with the genome. However, to date, no studies have evaluated the importance of systematic functions based on systematic biology in apples. In this study, we summarized the history of genetic maps of apples, and introduced the functions of gene families from the perspective of genomics; the functions included resisting abiotic and biotic stress, hormone response, fruit development and quality, epitomizing the development of other omics and relationships between functions. Furthermore, we established a model for gene structure and functional analyses, as well as of the protein interaction network, for apple. These results provide detailed systematic information for biological basis studies in apple as well as apple breeding, laying a good foundation for systematic biology. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Plant Growth Regulation Springer Journals
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Publisher
Springer Netherlands
Copyright
Copyright © 2017 by Springer Science+Business Media Dordrecht
Subject
Life Sciences; Plant Sciences; Plant Anatomy/Development; Plant Physiology; Agriculture
ISSN
0167-6903
eISSN
1573-5087
D.O.I.
10.1007/s10725-017-0276-1
Publisher site
See Article on Publisher Site

Abstract

With complete sequencing of the ‘Golden Delicious’ genome, the transcriptome, proteome and metabolome have been fused with the genome. However, to date, no studies have evaluated the importance of systematic functions based on systematic biology in apples. In this study, we summarized the history of genetic maps of apples, and introduced the functions of gene families from the perspective of genomics; the functions included resisting abiotic and biotic stress, hormone response, fruit development and quality, epitomizing the development of other omics and relationships between functions. Furthermore, we established a model for gene structure and functional analyses, as well as of the protein interaction network, for apple. These results provide detailed systematic information for biological basis studies in apple as well as apple breeding, laying a good foundation for systematic biology.

Journal

Plant Growth RegulationSpringer Journals

Published: Jun 21, 2017

References

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