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Michael McClelland, K. Sanderson, J. Spieth, S. Clifton, P. Latreille, L. Courtney, S. Porwollik, Johar Ali, M. Dante, Feiyu Du, Shunfang Hou, Daniel Layman, S. Leonard, Christine Nguyen, Kelsi Scott, Andrea Holmes, Neenu Grewal, E. Mulvaney, E. Ryan, Hui Sun, L. Florea, W. Miller, T. Stoneking, M. Nhan, R. Waterston, R. Wilson (2001)
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2Nature, 413
Carmen Alonso, M. Murtaugh, S. Dee, P. Davies (2012)
Project Update : Epidemiological study of air filtration systems for preventing PRRSV infection in large sow herds
S. Barbirz, Jürgen Müller, C. Uetrecht, A. Clark, U. Heinemann, R. Seckler (2008)
Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily relatedMolecular Microbiology, 69
Jenna Denyes, P. Krell, R. Manderville, H. Ackermann, Y. She, A. Kropinski (2014)
The genome and proteome of Serratia bacteriophage η which forms unstable lysogensVirology Journal, 11
J. Grant, Adriano Arantes, P. Stothard (2012)
Comparing thousands of circular genomes using the CGView Comparison ToolBMC Genomics, 13
Eddie Gilcrease, Danella Winn-Stapley, F. Hewitt, L. Joss, S. Casjens (2005)
Nucleotide Sequence of the Head Assembly Gene Cluster of Bacteriophage L and Decoration Protein CharacterizationJournal of Bacteriology, 187
C Alonso, MP Murtaugh, SA Dee, PR Davies (2013)
Epidemiological study of air filtration systems for preventing PRRSV infection in large sow herdsPrev Vet Med, 112
Hyun-Wol Kang, Jae-Won Kim, T. Jung, G. Woo (2013)
wksl3, a New Biocontrol Agent for Salmonella enterica Serovars Enteritidis and Typhimurium in Foods: Characterization, Application, Sequence Analysis, and Oral Acute Toxicity StudyApplied and Environmental Microbiology, 79
S. Gajewski, M. Webb, V. Galkin, E. Egelman, K. Kreuzer, S. White (2011)
Crystal structure of the phage T4 recombinase UvsX and its functional interaction with the T4 SF2 helicase UvsW.Journal of molecular biology, 405 1
J. Fraser, Zhou Yu, K. Maxwell, A. Davidson (2006)
Ig-like domains on bacteriophages: a tale of promiscuity and deceit.Journal of molecular biology, 359 2
A. Joshi, J. Siddiqi, G. Rao, M. Chakravorty (1982)
MB78, a virulent bacteriophage of Salmonella typhimuriumJournal of Virology, 41
Jun Xu, R. Hendrix, R. Duda (2014)
Chaperone-protein interactions that mediate assembly of the bacteriophage lambda tail to the correct length.Journal of molecular biology, 426 5
G. Lima-Mendez, A. Toussaint, R. Leplae (2011)
A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules.Research in microbiology, 162 8
D. Turner, M. Hezwani, S. Nelson, V. Salisbury, D. Reynolds (2012)
Characterization of the Salmonella bacteriophage vB_SenS-Ent1.The Journal of general virology, 93 Pt 9
A. Darling, B. Mau, N. Perna (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and RearrangementPLoS ONE, 5
(2010)
Biocontrol of foodborne bacterial pathogens using immobilized bacteriophages
Kristi Westover, Joseph Rusinko, Jon Hoin, M. Neal (2013)
Rogue taxa phenomenon: a biological companion to simulation analysis.Molecular phylogenetics and evolution, 69 1
Gwyneth Carey-Smith, C. Billington, A. Cornelius, J. Hudson, J. Heinemann, Wolfgang Schumann (2006)
Isolation and characterization of bacteriophages infecting Salmonella spp.FEMS microbiology letters, 258 2
G. Lima-Mendez, J. Helden, A. Toussaint, R. Leplae (2008)
Reticulate representation of evolutionary and functional relationships between phage genomes.Molecular biology and evolution, 25 4
H Anany (2010)
Biocontrol of foodborne bacterial pathogens using immobilized bacteriophages. Food Science
Robert Finn, Jaina Mistry, John Tate, Penny Coggill, A. Heger, Joanne Pollington, O. Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik Sonnhammer, Sean Eddy, Alex Bateman (2007)
The Pfam protein families databaseNucleic Acids Research, 38
RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, A Heger, K Hetherington, L Holm, J Mistry, ELL Sonnhammer, J Tate, M Punta (2014)
Pfam: the protein families databaseNucleic Acids Res, 42
W. Demczuk, R. Ahmed, H. Ackermann (2004)
Morphology of Salmonella enterica serovar Heidelberg typing phages.Canadian journal of microbiology, 50 10
Philip Jones, David Binns, Hsin-Yu Chang, M. Fraser, Weizhong Li, C. McAnulla, Hamish McWilliam, J. Maslen, A. Mitchell, Gift Nuka, Sebastien Pesseat, Antony Quinn, A. Sangrador-Vegas, Maxim Scheremetjew, Siew-Yit Yong, R. Lopez, S. Hunter (2014)
InterProScan 5: genome-scale protein function classificationBioinformatics, 30
Andrea Switt, R. Orsi, H. Bakker, K. Vongkamjan, C. Altier, M. Wiedmann (2013)
Genomic characterization provides new insight into Salmonella phage diversityBMC Genomics, 14
AIM Switt, A Sulakvelidze, M Wiedmann, AM Kropinski, DS Wishart, C Poppe, Y Liang (2014)
Salmonella: methods and protocols (methods in molecular biology)
S. Winter, Parameth Thiennimitr, Parameth Thiennimitr, M. Winter, B. Butler, D. Huseby, R. Crawford, J. Russell, C. Bevins, L. Adams, R. Tsolis, J. Roth, A. Bäumler (2010)
Gut inflammation provides a respiratory electron acceptor for SalmonellaNature, 467
Hans-Wolfgang Ackermann, M. Dubow, M. Gershman, B. Karska-Wysocki, S. Kasatiya, Martin Loessner, M. Mamet-Bratley, M. Regué (1997)
Taxonomic changes in tailed phages of enterobacteriaArchives of Virology, 142
A. Fokine, P. Leiman, M. Shneider, B. Ahvazi, Karen Boeshans, A. Steven, L. Black, V. Mesyanzhinov, M. Rossmann (2005)
Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.Proceedings of the National Academy of Sciences of the United States of America, 102 20
Jun Xu, R. Hendrix, R. Duda (2013)
A balanced ratio of proteins from gene G and frameshift-extended gene GT is required for phage lambda tail assembly.Journal of molecular biology, 425 18
R. Young, U. Bläsi (1995)
Holins: form and function in bacteriophage lysis.FEMS microbiology reviews, 17 1-2
E. Myers, W. Miller (1988)
Optimal alignments in linear spaceComputer applications in the biosciences : CABIOS, 4 1
A. Krogh, Björn Larsson, G. Heijne, E. Sonnhammer (2001)
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.Journal of molecular biology, 305 3
David Schwarzer, Katharina Stummeyer, R. Gerardy-Schahn, M. Mühlenhoff (2007)
Characterization of a Novel Intramolecular Chaperone Domain Conserved in Endosialidases and Other Bacteriophage Tail Spike and Fiber Proteins*Journal of Biological Chemistry, 282
F. Rohwer, R. Edwards (2002)
The Phage Proteomic Tree: a Genome-Based Taxonomy for PhageJournal of Bacteriology, 184
Sandra Chibani-Chennoufi, J. Sidoti, A. Bruttin, M. Dillmann, E. Kutter, F. Qadri, S. Sarker, H. Brüssow (2004)
Isolation of Escherichia coli Bacteriophages from the Stool of Pediatric Diarrhea Patients in BangladeshJournal of Bacteriology, 186
J. Lawrence, G. Hatfull, R. Hendrix (2002)
Imbroglios of Viral Taxonomy: Genetic Exchange and Failings of Phenetic ApproachesJournal of Bacteriology, 184
H. Ackermann, L. Berthiaume, S. Kasatiya (1972)
Morphologie des phages de lysotypie de Salmonella paratyphi B (schéma de Felix et Callow)Canadian Journal of Microbiology, 18
Steven Hooton, R. Atterbury, I. Connerton (2011)
Application of a bacteriophage cocktail to reduce Salmonella Typhimurium U288 contamination on pig skin.International journal of food microbiology, 151 2
Nikhat Zafar, R. Mazumder, Donald Seto (2002)
CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomesBMC Bioinformatics, 3
E. Summer, J. Gill, C. Upton, Carlos Gonzalez, R. Young (2007)
Role of phages in the pathogenesis of Burkholderia, or 'Where are the toxin genes in Burkholderia phages?'.Current opinion in microbiology, 10 4
H. Ackermann, M. Gershman (1992)
Morphology of phages of a general Salmonella typing set.Research in virology, 143 5
(2007)
Antigenic formulae of the Salmonella serovars. WHO Collaborating Centre for Reference and Research on Salmonella
M. Susskind, D. Botstein (1975)
Mechanism of action of Salmonella phage P22 antirepressor.Journal of molecular biology, 98 2
J. Bull, E. Vimr, I. Molineux (2010)
A tale of tails: Sialidase is key to success in a model of phage therapy against K1-capsulated Escherichia coli.Virology, 398 1
C. Byl, A. Kropinski (2000)
Sequence of the Genome of Salmonella Bacteriophage P22
S. Hagens, M. Loessner (2010)
Bacteriophage for biocontrol of foodborne pathogens: calculations and considerations.Current pharmaceutical biotechnology, 11 1
Y. Niu, T. McAllister, J. Nash, A. Kropinski, K. Stanford (2014)
Four Escherichia coli O157:H7 Phages: A New Bacteriophage Genus and Taxonomic Classification of T1-Like PhagesPLoS ONE, 9
F. Perler, G. Olsen, E. Adam (1997)
Compilation and analysis of intein sequences.Nucleic acids research, 25 6
Nikolas Papanikolaou, Kalliopi Trachana, T. Theodosiou, V. Promponas, I. Iliopoulos (2009)
Gene socialization: gene order, GC content and gene silencing in SalmonellaBMC Genomics, 10
J. Söding, A. Biegert, A. Lupas (2005)
The HHpred interactive server for protein homology detection and structure predictionNucleic Acids Research, 33
B. Tiwari, Shukho Kim, Jungmin Kim (2012)
Complete Genomic Sequence of Salmonella enterica Serovar Enteritidis Phage SE2Journal of Virology, 86
Mark Larkin, G. Blackshields, N. Brown, R. Chenna, P. McGettigan, Hamish McWilliam, F. Valentin, Iain Wallace, A. Wilm, R. Lopez, J. Thompson, T. Gibson, D. Higgins (2007)
Clustal W and Clustal X version 2.0Bioinformatics, 23 21
J. Grose, S. Casjens (2014)
Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.Virology, 468-470
A. Switt, A. Sulakvelidze, M. Wiedmann, A. Kropinski, D. Wishart, C. Poppe, Yongjie Liang (2015)
Salmonella phages and prophages: genomics, taxonomy, and applied aspects.Methods in molecular biology, 1225
S. Labrie, Julie Samson, S. Moineau (2010)
Bacteriophage resistance mechanismsNature Reviews Microbiology, 8
Li Li, C. Stoeckert, D. Roos (2003)
OrthoMCL: identification of ortholog groups for eukaryotic genomes.Genome research, 13 9
S. Spinelli, Cecilia Bebeacua, Igor Orlov, D. Tremblay, B. Klaholz, S. Moineau, C. Cambillau (2014)
Cryo-Electron Microscopy Structure of Lactococcal Siphophage 1358 VirionJournal of Virology, 88
Sung-Hun Kim, Jeong-Hyun Park, B. Lee, H. Kwon, Ji-Hyun Shin, Jungmin Kim, Shukho Kim (2012)
Complete Genome Sequence of Salmonella Bacteriophage SS3eJournal of Virology, 86
Jun Xu, R. Hendrix, R. Duda (2004)
Conserved translational frameshift in dsDNA bacteriophage tail assembly genes.Molecular cell, 16 1
R. Lavigne, Donald Seto, P. Mahadevan, H. Ackermann, A. Kropinski (2008)
Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools.Research in microbiology, 159 5
L. Brovko, H. Anany, M. Griffiths (2012)
Bacteriophages for detection and control of bacterial pathogens in food and food-processing environment.Advances in food and nutrition research, 67
Sung Hong, Jipseol Jeong, Jinju Lee, Suk Kim, W. Min, H. Myung (2013)
Therapeutic effects of bacteriophages against Salmonella gallinarum infection in chickens.Journal of microbiology and biotechnology, 23 10
(2009)
BMC Microbiology BioMed Central
N. Lappe, G. Doran, J. O'connor, C. O’Hare, M. Cormican (2009)
Characterization of bacteriophages used in the Salmonella enterica serovar Enteritidis phage-typing scheme.Journal of medical microbiology, 58 Pt 1
R Lavigne, P Darius, E Summer, D Seto, P Mahadevan, A Nilsson, H Ackermann, A Kropinski (2009)
Classification of Myoviridae bacteriophages using protein sequence similarityBMC Microbiol, 9
A. Switt, H. Bakker, K. Vongkamjan, K. Hoelzer, L. Warnick, K. Cummings, M. Wiedmann (2013)
Salmonella bacteriophage diversity reflects host diversity on dairy farms.Food microbiology, 36 2
D. Mollov, B. Lockhart, D. Zlesak (2013)
Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family PotyviridaeArchives of Virology, 158
Ju-Hoon Lee, Hakdong Shin, H. Kim, S. Ryu (2011)
Complete Genome Sequence of Salmonella Bacteriophage SPN3USJournal of Virology, 85
J. Söding (2005)
Protein homology detection by HMM?CHMM comparisonBioinformatics, 21 7
Based on morphology and comparative nucleotide and protein sequence analysis, a new subfamily of the family Siphoviridae is proposed, named “ Jerseyvirinae ” and consisting of three genera, “ Jerseylikevirus ”, “ Sp3unalikevirus ” and “ K1glikevirus ”. To date, this subfamily consists of 18 phages for which the genomes have been sequenced. Salmonella phages Jersey, vB_SenS_AG11, vB_SenS-Ent1, vB_SenS-Ent2, vB_SenS-Ent3, FSL SP-101, SETP3, SETP7, SETP13, SE2, SS3e and wksl3 form the proposed genus “ Jerseylikevirus ”. The proposed genus “ K1glikevirus ” consists of Escherichia phages K1G, K1H, K1ind1, K1ind2 and K1ind3. The proposed genus “ Sp3unalikevirus ” contains one member so far. Jersey-like phages appear to be widely distributed, as the above phages were isolated in the UK, Canada, the USA and South Korea between 1970 and the present day. The distinguishing features of this subfamily include a distinct siphovirus morphotype, genomes of 40.7-43.6 kb (49.6-51.4 mol % G+C), a syntenic genome organisation, and a high degree of nucleotide sequence identity and shared proteins. All known members of the proposed subfamily are strictly lytic.
Archives of Virology – Springer Journals
Published: Apr 1, 2015
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