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References (130)
-
KW Earley (2006)
616Plant J, 45
-
Y Cheng (2006)
1790Genes Dev, 20
-
GM Spiess, A Hausman, P Yu, JD Cohen, RA Rampey, BK Zolman (2014)
Auxin input pathway distributions are mitigated by changes in auxin biosynthetic gene expression in ArabidopsisPlant Physiol, 165
-
C Won, X Shen, K Mashiguchi, Z Zheng, X Dai, Y Cheng, H Kasahara, Y Kamiya, J Chory, Y Zhao (2011)
Conversion of tryptophan to indole-3-acetic acid by tryptophan aminotransferases of Arabidopsis and YUCCAs in ArabidopsisProc Natl Acad Sci USA, 108
-
C Won (2011)
18518Proc Natl Acad Sci USA, 108
-
K Ljung (2002)
309Plant Mol Biol, 50
-
W Boerjan (1995)
1405Plant Cell, 7
-
L-C Li, G-J Qin, T Tsuge, X-H Hou, M-Y Ding, T Aoyama, A Oka, Z Chen, H Gu, Y Zhao, L-J Qu (2008)
SPOROCYTELESS modulates YUCCA expression to regulate the development of lateral organs in ArabidopsisNew Phytol, 179
-
Y Zhao (2014)
Auxin biosynthesisArabidopsis book, 12
-
Q Ma (2014)
25Physiol Plant, 151
-
Y Ishida (2014)
67Biosci Biotechnol Biochem, 78
-
K Ljung (2001)
465Plant J, 28
-
PE Staswick (2009)
1310Plant Physiol, 150
-
A Nakamura (2003)
1843Plant Physiol, 133
-
D Pacheco-Villalobos, M Sankar, K Ljung, CS Hardtke (2013)
Disturbed local auxin homeostasis enhances cellular anisotropy and reveals alternative wiring of auxin-ethylene crosstalk in Brachypodium distachyon seminal rootsPLoS Genet, 9
-
V Ståldal, I Cierlik, S Chen, K Landberg, T Baylis, M Myrenås, JF Sundström, DM Eklund, K Ljung, E Sundberg (2012)
The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of floweringPlant Mol Biol, 78
-
V Ståldal (2012)
545Plant Mol Biol, 78
-
P Hornitschek (2012)
699Plant J, 71
-
T Lehmann (2010)
895Eur J Cell Biol, 89
-
ND Tivendale, JJ Ross, JD Cohen (2014)
The shifting paradigms of auxin biosynthesisTrends Plant Sci, 19
-
K Hayashi (2012)
590ACS Chem Biol, 7
-
DM Eklund, V Ståldal, I Valsecchi, I Cierlik, C Eriksson, K Hiratsu, M Ohme-Takagi, JF Sundström, M Thelander, I Ezcurra, E Sundberg (2010)
The Arabidopsis thaliana STYLISH1 protein acts as a transcriptional activator regulating auxin biosynthesisPlant Cell, 22
-
DA Korasick, TA Enders, LC Strader (2013)
Auxin biosynthesis and storage formsJ Exp Bot, 64
-
JJ Sohlberg (2006)
112Plant J, 47
-
JD Cohen, RS Bandurski (1982)
Chemistry and physiology of the bound auxinsAnnu Rev Plant Physiol, 33
-
S Abel (1995)
533J Mol Biol, 251
-
DA Korasick (2013)
2541J Exp Bot, 64
-
K Nemoto, M Hara, M Suzuki, H Seki, T Muranaka, Y Mano (2009)
The NtAMI1 gene functions in cell division of tobacco BY-2 cells in the presence of indole-3-acetamideFEBS Lett, 583
-
WD Teale (2006)
847Nat Rev Mol Cell Biol, 7
-
Y Mano, K Nemoto (2012)
The pathway of auxin biosynthesis in plantsJ Exp Bot, 63
-
M Yamada, K Greenham, MJ Prigge, PJ Jensen, M Estelle (2009)
The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant developmentPlant Physiol, 151
-
M Yamada (2009)
168Plant Physiol, 151
-
T Higashide (2014)
4556Sci Rep, 4
-
M Lee, J-H Jung, D-Y Han, PJ Seo, WJ Park, C-M Park (2012)
Activation of a flavin monooxygenase gene YUCCA7 enhances drought resistance in ArabidopsisPlanta, 235
-
AW Woodward, B Bartel (2005)
Auxin: regulation, action, and interactionAnn Bot, 95
-
Y Zhao (2012)
Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plantsMol Plant, 5
-
Y Zhao (2002)
3100Genes Dev, 16
-
T Lehmann, M Hoffmann, M Hentrich, S Pollmann (2010)
Indole-3-acetamide-dependent auxin biosynthesis: a widely distributed way of indole-3-acetic acid production?Eur J Cell Biol, 89
-
KW Earley, JR Haag, O Pontes, K Opper, T Juehne, KM Song, CS Pikaard (2006)
Gateway-compatible vectors for plant functional genomics and proteomicsPlant J, 45
-
Y Mano (2012)
2853J Exp Bot, 63
-
SL Stone (2008)
3151Proc Natl Acad Sci USA, 105
-
Z Zheng (2013)
244Nat Chem Biol, 9
-
M Hentrich, C Böttcher, P Düchting, Y Cheng, Y Zhao, O Berkowitz, J Masle, J Medina, S Pollmann (2013)
The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expressionPlant J, 74
-
LJ Quittenden (2014)
831J Plant Growth Regul, 33
-
AN Stepanova (2011)
3961Plant Cell, 23
-
Y Zhao (2014)
e0173Arabidopsis book, 12
-
KJ Livak, TD Schmittgen (2001)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-(Delta)(Delta) CT methodsMethods, 25
-
K Ljung, AK Hull, M Kowalczyk, A Marchant, J Celenza, JD Cohen, G Sandberg (2002)
Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thalianaPlant Mol Biol, 50
-
LJ Quittenden, NW Davies, JA Smith, PP Molesworth, ND Tivendale, JJ Ross (2009)
Auxin biosynthesis in pea: characterization of the tryptamine pathwayPlant Physiol, 151
-
Y Mori (2005)
467Plant Sci, 168
-
V Pinon, K Prasad, SP Grigg, GF Sanchez-Perez, B Scheres (2013)
Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in ArabidopsisProc Natl Acad Sci USA, 110
-
S Sugawara (2009)
5430Proc Natl Acad Sci USA, 106
-
R Brandt, M Salla-Martret, J Bou-Torrent, T Musielak, M Stahl, C Lanz, F Ott, M Schmid, T Greb, M Schwarz, S-B Choi, MK Barton, BJ Reinhart, T Liu, M Quint, J-C Palauqui, JF Martínez-Gracía, S Wenkel (2012)
Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responsesPlant J, 72
-
A Ishihara, Y Hashimoto, C Tanaka, JG Dubouzet, T Nakao, F Matsuda, T Nishioka, H Miyagawa, K Wakasa (2008)
The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin productionPlant J, 54
-
Y Ishida, K Hayashi, K Soeno, T Asami, S Nakamura, M Suzuki, A Nakamura, Y Shimada (2014)
Analysis of a putative auxin biosynthesis inhibitor, indole-3-oxoethylphosphonic acid, in ArabidopsisBiosci Biotechnol Biochem, 78
-
Q Ma, S Robert (2014)
Auxin biology revealed by small moleculesPhysiol Plant, 151
-
DM Eklund (2010)
349Plant Cell, 22
-
D Pacheco-Villalobos (2013)
e1003564PLoS Genet, 9
-
P Hornitschek, MV Kohnen, S Lorrain, J Rougemont, K Ljung, I López-Vidriero, JM Franco-Zorrilla, R Solano, M Trevisan, S Pradervand, I Xenarios, C Fankhauser (2012)
Phytochrome interacting fators 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingPlant J, 71
-
SJ Clough, AF Bent (1998)
Floral dip: a simplified method for Agrobacterium -mediated transformation of Arabidopsis thalianaPlant J, 16
-
T Nishimura (2014)
352Plant J, 77
-
A Ishihara (2008)
481Plant J, 54
-
K Soeno (2010)
524Plant Cell Physiol, 51
-
A Nakamura, K Higuchi, H Goda, MT Fujiwara, S Sawa, T Koshiba, Y Shimada, S Yoshida (2003)
Brassinolide induces IAA5 , IAA19 , and DR5, a synthetic auxin response element in Arabidopsis, implying a cross talk point of brassinosteroid and auxin signalingPlant Physiol, 133
-
K Mashiguchi (2011)
18512Proc Natl Acad Sci USA, 108
-
AW Woodward (2005)
707Ann Bot, 95
-
H Goda, Y Shimada, T Asami, S Fujioka, S Yoshida (2002)
Microarray analysis of brassinosteroid-regulated genes in ArabidopsisPlant Physiol, 130
-
T Nishimura, K Hayashi, H Suzuki, A Gyohda, C Takaoka, Y Sakaguchi, S Matsumoto, H Kasahara, T Sakai, J Kato, Y Kamiya, T Koshiba (2014)
Yucasin is a potent inhibitor of YUCCA, a key enzyme in auxin biosynthesisPlant J, 77
-
Y Tao (2008)
164Cell, 133
-
K Hayashi, J Neve, M Hirose, A Kuboki, Y Shimada, S Kepinski, H Nozaki (2012)
Rational design of an auxin antagonist of the SCF TIR1 auxin receptor complexACS Chem Biol, 7
-
WD Teale, IA Paponov, K Palme (2006)
Auxin in action: signalling, transport and the control of plant growth and developmentNat Rev Mol Cell Biol, 7
-
S Sugawara, S Hishiyama, Y Jikumaru, A Hanada, T Nishimura, T Koshiba, Y Zhao, Y Kamiya, H Kasahara (2009)
Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in ArabidopsisProc Natl Acad Sci USA, 106
-
R Brandt (2012)
31Plant J, 72
-
K Mashiguchi, K Tanaka, T Sakai, S Sugawara, H Kawaide, M Natsume, A Hanada, T Yaeno, K Shirasu, H Yao, P McSteen, Y Zhao, K Hayashi, Y Kamiya, H Kasahara (2011)
The main auxin biosynthesis pathway in ArabidopsisProc Natl Acad Sci USA, 108
-
K Soeno, H Goda, T Ishii, T Ogura, T Tachikawa, E Sasaki, S Yoshida, S Fujioka, T Asami, Y Shimada (2010)
Auxin biosynthesis inhibitors, identified by a genomics-based approach, provide insights into auxin biosynthesisPlant Cell Physiol, 51
-
V Kriechbaumer (2012)
292Plant J, 70
-
Y Zhao, SK Christensen, C Fankhauser, JR Cashman, JD Cohen, D Weigel, J Chory (2001)
A role for flavin monooxygenase-like enzymes in auxin biosynthesisScience, 291
-
W Boerjan, M-T Cervera, M Delarue, T Beeckman, W Dewitte, C Bellini, M Caboche, HV Onckelen, MV Montagu, D Inzé (1995)
Superroot, a recessive mutation in Arabidopsis , confers auxin overproductionPlant Cell, 7
-
X Dai (2013)
1448J Biol Chem, 288
-
AN Stepanova, J Robertson-Hoyt, J Yun, LM Benavente, D-Y Xie, K Dolezal, A Schlereth, G Jürgens, JM Alonso (2008)
TAA1 -mediated auxin biosynthesis is essential for hormone crosstalk and plant developmentCell, 133
-
AN Stepanova (2008)
177Cell, 133
-
S Abel, MD Nguyen, A Theologis (1995)
The PS - IAA4/5 -like family of early auxin-inducible mRNAs in Arabidopsis thalianaJ Mol Biol, 251
-
K Nemoto (2009)
487FEBS Lett, 583
-
W He (2011)
3944Plant Cell, 23
-
L-C Li (2008)
751New Phytol, 179
-
K Ljung (2013)
Auxin metabolism and homeostasis during plant developmentDevelopment, 140
-
MR Rosquete, E Barbez, J Kleine-Vehn (2012)
Cellular auxin homeostasis: gatekeeping is housekeepingMol Plant, 5
-
J Sun, L Qi, Y Li, J Chu, C Li (2012)
PIF4-mediated activation of YUCCA8 expression integrates temperature into the auxin pathway in regulating Arabidopsis hypocotyl growthPLoS Genet, 8
-
J Sun (2012)
e1002594PLoS Genet, 8
-
Y Zhao (2001)
306Science, 291
-
S Pollmann, D Neu, EW Weiler (2003)
Molecular cloning and characterization of an amidase from Arabidopsis thaliana capable of converting indole-3-acetamide into the plant growth hormone, indole-3-acetic acidPhytochemistry, 62
-
LJ Quittenden, EL McAdam, NW Davies, JJ Ross (2014)
Evidence that indole-3-acetic acid is not synthesized via the indole-3-acetamide pathway in pea rootsJ Plant Growth Regul, 33
-
Y Zhao, AK Hull, NR Gupta, KA Goss, J Alonso, JR Ecker, J Normanly, J Chory, JL Celenza (2002)
Trp-dependent auxin biosynthesis in Arabidopsis : involvment of cytochrome P450s CYP79B2 and CYP79B3Genes Dev, 16
-
R Rawat, J Schwartz, MA Jones, I Sairanen, Y Cheng, CR Andersson, Y Zhao, K Ljung, SL Harmer (2009)
REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathwaysProc Natl Acad Sci USA, 106
-
SL Stone, SA Braybrook, SL Paula, LW Kwong, J Meuser, J Pelletier, T-F Hsieh, RL Fischer, RB Goldberg, JJ Harada (2008)
Arabidopsis LEAFY COTYLEDONE2 induces maturation traits and auxin activity: implications for somatic embryogenesisProc Natl Acad Sci USA, 105
-
JD Cohen (1982)
403Annu Rev Plant Physiol, 33
-
AN Stepanova, J Yun, LM Robles, O Novak, W He, H Guo, K Ljung, JM Alonso (2011)
The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesisPlant Cell, 23
-
ND Tivendale, NW Davis, PP Molesworth, SE Davidson, JA Smith, EK Lowe, JB Reid, JJ Ross (2010)
Reassessing the role of N -hydroxytryptamine in auxin biosynthesisPlant Physiol, 154
-
Z Zheng, Y Guo, O Novák, X Dai, Y Zhao, K Ljung, JP Noel, J Chory (2013)
Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1Nat Chem Biol, 9
-
Y Cheng, X Dai, Y Zhao (2006)
Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in ArabidopsisGenes Dev, 20
-
PE Staswick (2009)
The tryptophan conjugates of jasmonic and indole-3-acetic acids are endogenous auxin inhibitorsPlant Physiol, 150
-
KJ Livak (2001)
402Methods, 25
-
LJ Quittenden (2009)
1130Plant Physiol, 151
-
M Lee (2012)
923Planta, 235
-
K Ljung (2013)
943Development, 140
-
KA Franklin (2011)
20231Proc Natl Acad Sci USA, 108
-
GM Spiess (2014)
1092Plant Physiol, 165
-
Y Tao, J-L Ferrer, K Ljung, F Pojer, F Hong, JA Long, L Li, JE Moreno, ME Bowman, LJ Ivans, Y Cheng, J Lim, Y Zhao, CL Ballaré, G Sandberg, JP Noel, J Chory (2008)
Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plantsCell, 133
-
L Li (2012)
785Genes Dev, 26
-
ND Tivendale (2010)
1957Plant Physiol, 154
-
L Li, K Ljung, G Breton, RJ Schmitz, J Pruneda-Paz, C Cowing-Zitron, BJ Cole, LJ Ivans, UV Pedmale, H-S Jung, JR Ecker, SA Kay, J Chory (2012)
Linking photoreceptor excitation to changes in plant architectureGenes Dev, 26
-
M Hentrich (2013)
626Plant J, 74
-
KA Franklin, SH Lee, D Patel, SV Kumar, AK Spartz, C Gu, S Ye, P Yu, G Breen, JD Cohen, PA Wigge, WM Gray (2011)
Phytochrome-interacting factor 4 (PIF4) regulates auxin biosynthesis at high temperatureProc Natl Acad Sci USA, 108
-
J Ludwig-Müller (2011)
1757J Exp Bot, 62
-
V Pinon (2013)
1107Proc Natl Acad Sci USA, 110
-
JJ Sohlberg, M Myrenås, S Kuusk, U Lagercrantz, M Kowalczyk, G Sandberg, E Sundberg (2006)
STY1 regulates auxin homeostasis and affects apical-basal patterning of Arabidopsis gynoeciumPlant J, 47
-
V Kriechbaumer, P Wang, C Hawes, BM Abell (2012)
Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentationPlant J, 70
-
ND Tivendale (2014)
44Trends Plant Sci, 19
-
K Ljung, RP Bhalerao, G Sandberg (2001)
Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growthPlant J, 28
-
X Dai, K Mashiguchi, Q Chen, H Kasahara, Y Kamiya, S Ojha, J DuBois, D Ballou, Y Zhao (2013)
The biochemical mechanism of auxin biosynthesis by an Arabidopsis YUCCA flavin-containing monooxygenaseJ Biol Chem, 288
-
S Pollmann (2003)
293Phytochemistry, 62
-
Y Mori, T Nishimura, T Koshiba (2005)
Vigorous synthesis of indole-3-acetic acid in the apical very tip leads to a constant basipetal flow of the hormone in maize coleoptilesPlant Sci, 168
-
W He, J Brumos, H Li, Y Ji, M Ke, X Gong, Q Zeng, W Li, X Zhang, F An, X Wen, P Li, J Chu, X Sun, C Yan, N Yan, D-Y Xie, N Raikhel, Z Yang, AN Stepanova, JM Alonso, H Guo (2011)
A small-molecule screen identifies l -kynurenine as a competitive inhibitor of TAA1/TAR activity in ethylene-directed auxin biosynthesis and root growth in ArabidopsisPlant Cell, 23
-
MR Rosquete (2012)
772Mol Plant, 5
-
SJ Clough (1998)
735Plant J, 16
-
T Higashide, M Narukawa, Y Shimada, K Soeno (2014)
Suppression of elongation and growth of tomato seedlings by auxin biosynthesis inhibitors and modeling of the growth and environmental responseSci Rep, 4
-
R Rawat (2009)
16883Proc Natl Acad Sci USA, 106
-
Y Zhao (2012)
334Mol Plant, 5
-
J Ludwig-Müller (2011)
Auxin conjugates: their role for plant development and in the evolution of land plantsJ Exp Bot, 62
-
H Goda (2002)
1319Plant Physiol, 130
- Publisher
- Springer Journals
- Copyright
- Copyright © 2015 by Springer-Verlag Berlin Heidelberg
- Subject
- Life Sciences; Plant Sciences; Cell Biology; Biotechnology; Plant Biochemistry
- ISSN
- 0721-7714
- eISSN
- 1432-203X
- DOI
- 10.1007/s00299-015-1791-z
- pmid
- 25903543
- Publisher site
- See Article on Publisher Site
Abstract
The phytohormone auxin plays an important role in plant growth and development, and levels of active free auxin are determined by biosynthesis, conjugation, and polar transport. Unlike conjugation and polar transport, little is known regarding the regulatory mechanism of auxin biosynthesis. We discovered that expression of genes encoding indole-3-pyruvic acid (IPyA) pathway enzymes is regulated by elevated or reduced active auxin levels. Expression levels of TAR2 , YUC1 , YUC2 , YUC4 , and YUC6 were downregulated in response to synthetic auxins (1-naphthaleneacetic acid (NAA) and 2,4-dichlorophenoxyacetic acid (2,4-D)) exogenously applied to Arabidopsis thaliana L. seedlings. Concomitantly, reduced levels of endogenous indole-3-acetic acid (IAA) were observed. Alternatively, expression of these YUCCA genes was upregulated by the auxin biosynthetic inhibitor kynurenine in Arabidopsis seedlings, accompanied by reduced IAA levels. These results indicate that expression of YUCCA genes is regulated by active auxin levels. Similar results were also observed in auxin-overproduction and auxin-deficient mutants. Exogenous application of IPyA to Arabidopsis seedlings preincubated with kynurenine increased endogenous IAA levels, while preincubation with 2,4-D reduced endogenous IAA levels compared to seedlings exposed only to IPyA. These results suggest that in vivo conversion of IPyA to IAA was enhanced under reduced auxin levels, while IPyA to IAA conversion was depressed in the presence of excess auxin. Based on these results, we propose that the IPyA pathway is transcriptionally regulated through a negative feedback mechanism in response to active auxin levels.
Journal
Plant Cell Reports – Springer Journals
Published: Aug 1, 2015