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References (24)
-
K Bányai, R Borzák, K Ihász, E Fehér, Á Dán, F Jakab, T Papp, U Hetzel, RE Marschang, SL Farkas (2014)
Whole-genome sequencing of a green bush viper reovirus reveals a shared evolutionary history between reptilian and unusual mammalian orthoreovirusesArch Virol, 159
-
SK Lau, PC Woo, CC Yip, GK Choi, Y Wu, R Bai, RY Fan, KK Lai, KH Chan, KY Yuen (2012)
Identification of a novel feline picornavirus from the domestic catJ Virol, 86
-
PC Woo, SK Lau, GK Choi, Y Huang, JL Teng, HW Tsoi, H Tse, ML Yeung, KH Chan, DY Jin, KY Yuen (2012)
Natural occurrence and characterization of two internal ribosome entry site elements in a novel virus, canine picodicistrovirus, in the picornavirus-like superfamilyJ Virol, 86
-
N Blom, J Hansen, D Blaas, S Brunak (1996)
Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networksProtein Sci, 5
-
B Chevreux, T Wetter, S Suhai (1999)
Computer science and biology: proceedings of the German conference on bioinformatics -
M Chow, JF Newman, D Filman, JM Hogle, DJ Rowlands, F Brown (1987)
Myristylation of picornavirus capsid protein VP4 and its structural significanceNature, 327
-
KB Nicholas, HB Nicholas, DW Deerfield (1997)
GeneDoc: analysis and visualization of genetic variationEmbnet News, 4
-
K Tamura, G Stecher, D Peterson, A Filipski, S Kumar (2013)
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0Mol Biol Evol, 30
-
GM Jenkins, EC Holmes (2003)
The extent of codon usage bias in human RNA viruses and its evolutionary originVirus Res, 92
-
F Abascal, R Zardoya, MJ Telford (2010)
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translationsNucleic Acids Res, 38
-
SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman (1990)
Basic local alignment search toolJ Mol Biol, 215
-
AE Gorbalenya, EV Koonin, MM Lai (1991)
Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronavirusesFEBS Lett, 288
-
V Palya, R Glávits, M Dobos-Kovács, É Ivanics, É Nagy, K Bányai, G Reuter, G Szűcs, Á Dán, M Benkő (2003)
Reovirus identified as cause of disease in young geeseAvian Pathol, 32
-
RM Pintó, L Aragonès, MI Costafreda, E Ribes, A Bosch (2007)
Codon usage and replicative strategies of hepatitis A virusVirus Res, 127
-
RE Marschang (2011)
Viruses infecting reptilesViruses, 3
-
R Schmieder, R Edwards (2011)
Quality control and preprocessing of metagenomic datasetsBioinformatics, 27
-
AE Gorbalenya, EV Koonin, YI Wolf (1990)
A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA virusesFEBS Lett, 262
-
V Sauvage, M Ar Gouilh, J Cheval, E Muth, K Pariente, A Burguiere, V Caro, JC Manuguerra, M Eloit (2012)
A member of a new Picornaviridae genus is shed in pig fecesJ Virol, 86
-
T Rosseel, M Scheuch, D Höper, N Regge, AB Caij, F Vandenbussche, S Van Borm (2012)
DNase SISPA-next generation sequencing confirms Schmallenberg virus in Belgian field samples and identifies genetic variation in EuropePLoS ONE, 7
-
AE Gorbalenya, AP Donchenko, VM Blinov, EV Koonin (1989)
Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. A distinct protein superfamily with a common structural foldFEBS Lett, 243
-
T Hammerle, A Molla, E Wimmer (1992)
Mutational analysis of the proposed FG loop of poliovirus proteinase 3C identifies amino acids that are necessary for 3CD cleavage and might be determinants of a function distinct from proteolytic activityJ Virol, 66
-
AN Lukashev (2010)
Recombination among picornavirusesRev Med Virol, 20
-
NJ Knowles, T Hovi, T Hyypiä, AMQ King, AM Lindberg, MA Pallansch, AC Palmenberg, P Simmonds, T Skern, G Stanway, T Yamashita, R Zell (2012)
Virus taxonomy: classification and nomenclature of viruses. Ninth report of the International Committee on Taxonomy of Viruses -
V Racaniello (2007)
Fields of virology
- Publisher
- Springer Journals
- Copyright
- Copyright © 2015 by Springer-Verlag Wien
- Subject
- Biomedicine; Virology; Medical Microbiology; Infectious Diseases
- ISSN
- 0304-8608
- eISSN
- 1432-8798
- DOI
- 10.1007/s00705-014-2292-z
- pmid
- 25430906
- Publisher site
- See Article on Publisher Site
Abstract
Near-complete genome sequences of seven picornavirus (PV) strains isolated from different terrestrial tortoise species were determined and characterized. The genome organization of the strains proved to be similar and displayed a typical PV layout, and the polyprotein-encoding regions showed low similarity to those of other PVs. The predicted regions of the tortoise PV genomes were related to the corresponding genome parts of viruses belonging to distinct genera, implying modular evolution of these novel viruses. Our results suggest that these tortoise PVs belong to a prototype species in a separate proposed genus in the family Picornaviridae , tentatively called Topivirus ( To rtoise pi cornavirus).
Journal
Archives of Virology – Springer Journals
Published: Mar 1, 2015