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S. Xu, K. Khan, D. Klindworth, J. Faris, G. Nygard (2004)
Chromosomal location of genes for novel glutenin subunits and gliadins in wild emmer wheat (Triticum turgidum L. var. dicoccoides)Theoretical and Applied Genetics, 108
(2005)
BIOINFORMATICS APPLICATIONS NOTE Sequence analysis r2cat: synteny plots and comparative assembly
Andrew Robinson, Christopher Love, J. Batley, G. Barker, David Edwards (2004)
Simple sequence repeat marker loci discovery using SSR primer.Bioinformatics, 20 9
J. Peng, N. Lapitan (2005)
Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markersFunctional & Integrative Genomics, 5
S. Cardone, P. Polci, J. Selva, M. Mecchia, S. Pessino, P. Hermann, V. Cambi, P. Voigt, G. Spangenberg, V. Echenique (2006)
Novel genotypes of the subtropical grass Eragrostis curvula for the study of apomixis (diplospory)Euphytica, 151
N. Rostoks, Sharon Mudie, L. Cardle, J. Russell, L. Ramsay, A. Booth, J. Svensson, S. Wanamaker, H. Walia, E. Rodriguez, P. Hedley, Hui Liu, Jenny Morris, T. Close, D. Marshall, R. Waugh (2005)
Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stressMolecular Genetics and Genomics, 274
U. Lagercrantz, H. Ellegren, L. Andersson (1993)
The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates.Nucleic acids research, 21 5
M. Katti, P. Ranjekar, V. Gupta (2001)
Differential distribution of simple sequence repeats in eukaryotic genome sequences.Molecular biology and evolution, 18 7
A. Stewart (1994)
Genes VJournal of Medical Genetics, 31
(1991)
Curvetto NR (1991) Citogenética
(1986)
Estudios citogenéticos en pasto llorón, Eragrostis curvula (Schrad.) Nees
K. Garg, P. Green, D. Nickerson (1999)
Identification of candidate coding region single nucleotide polymorphisms in 165 human genes using assembled expressed sequence tags.Genome research, 9 11
(1991)
Introducción del pasto llorón en la Argentina
T. Murashige, F. Skoog (1962)
A revised medium for rapid growth and bio assays with tobacco tissue culturesPhysiologia Plantarum, 15
T. Sawbridge, E. Ong, Charlotte Binnion, M. Emmerling, R. Mcinnes, Katrina Meath, Nga Nguyen, K. Nunan, M. O’Neill, Fiona O'Toole, C. Rhodes, Jason Simmonds, P. Tian, Katherine Wearne, T. Webster, A. Winkworth, G. Spangenberg (2003)
Generation and analysis of expressed sequence tags in perennial ryegrass (Lolium perenne L.)Plant Science, 165
E. Watson, M. Dallwitz (1992)
Grass Genera of the World
Mauricio Rota, R. Kantety, Ju-Kyung Yu, M. Sorrells (2005)
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barleyBMC Genomics, 6
W. Ji, Yong Li, Jie Li, C. Dai, Xi Wang, X. Bai, H. Cai, Liang Yang, Yanming Zhu (2006)
Generation and analysis of expressed sequence tags from NaCl-treated Glycine sojaBMC Plant Biology, 6
G. Lazo, S. Chao, D. Hummel, H. Edwards, C. Crossman, N. Lui, D. Matthews, V. Carollo, D. Hane, F. You, G. Butler, R. Miller, T. Close, J. Peng, N. Lapitan, J. Gustafson, L. Qi, Benjamin Echalier, B. Gill, M. Dilbirliği, H. Randhawa, K. Gill, R. Greene, M. Sorrells, E. Akhunov, J. Dvorak, A. Linkiewicz, J. Dubcovsky, Khwaja Hossain, V. Kalavacharla, S. Kianian, A. Mahmoud, Miftahudin, X. Ma, E. Conley, J. Anderson, M. Pathan, H. Nguyen, P. McGuire, C. Qualset, O. Anderson (2004)
Development of an Expressed Sequence Tag (EST) Resource for Wheat (Triticum aestivum L.)Genetics, 168
Amanda Ingram, J. Doyle (2003)
The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16.American journal of botany, 90 1
M. Mecchia, A. Ochogavía, Juan Selva, N. Laspina, S. Felitti, L. Martelotto, G. Spangenberg, V. Echenique, S. Pessino (2007)
Genome polymorphisms and gene differential expression in a 'back-and-forth' ploidy-altered series of weeping lovegrass (Eragrostis curvula).Journal of plant physiology, 164 8
D. Xu, T. Ban (2004)
Phylogenetic and evolutionary relationships between Elymus humidus and other Elymus species based on sequencing of non-coding regions of cpDNA and AFLP of nuclear DNATheoretical and Applied Genetics, 108
J. Kelley, J. Gocayne, M. Dubnick, Hong Xiao, Carl Merril, Andrew Wu, Bjorn Olde, Ruben Moreno, A. Kerlavage, W. McCombie (1991)
Complementary DNA sequencing: expressed sequence tags and human genome projectScience, 252
M. Bennett, J. Smith (1976)
Nuclear dna amounts in angiosperms.Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 274 933
D. Tautz (1989)
Hypervariability of simple sequences as a general source for polymorphic DNA markers.Nucleic acids research, 17 16
(1986)
Taxonomic patterns in protein amino acid profiles of grass leaves and caryopses
Ji-Ping Wang, Bruce Lindsay, Liying Cui, P. Wall, Josh Marion, Jiaxuan Zhang, P. Wall, C. dePamphilis, Bruce G, Liying, P Wall (2005)
Gene Capture Prediction and Overlap Estimation in Est Sequencing from One or Multiple Libraries Gene Capture Prediction and Overlap Estimation in Est Sequenc- Ing from One or Multiple Libraries
H-H Yeho, L Watson (1986)
Grass system and evolution
Chang-Xing Ma, G. Casella, R. Wu (2002)
Functional mapping of quantitative trait loci underlying the character process: a theoretical framework.Genetics, 161 4
N. Nicot, V. Chiquet, B. Gandon, L. Amilhat, F. Legeai, P. Leroy, M. Bernard, P. Sourdille (2004)
Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)Theoretical and Applied Genetics, 109
R. Kantety, Mauricio Rota, D. Matthews, M. Sorrells (2002)
Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheatPlant Molecular Biology, 48
W. Powell, G. Machray, J. Provan (1996)
Polymorphism revealed by simple sequence repeatsTrends in Plant Science, 1
L. Gao, R. Jing, N. Huo, Y. Li, X. Li, R. Zhou, X. Chang, J. Tang, Z. Ma, J. Jia (2004)
One hundred and one new microsatellite loci derived from ESTs (EST-SSRs) in bread wheatTheoretical and Applied Genetics, 108
M. Morgante, A. Olivieri (1993)
PCR-amplified microsatellites as markers in plant genetics.The Plant journal : for cell and molecular biology, 3 1
(2004)
Lovegrasses. In: American Society of Agronomy, Crop Science Society of America, Soil Science Society of America, Warm-Season (C4) Grasses
G. Barker, J. Batley, H. O'Sullivan, K. Edwards, David Edwards (2003)
Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNPBioinformatics, 19 3
A Conesa, S Götz, JM García-Gómez, J Perol, M Talón, M Robles (2005)
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchBioinformatic, 2
R Hoeven, C Ronning, J Giovannoni, G Martin, S Tanksley (2002)
Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencingPlant Cell, 14
T. Sawbridge, E. Ong, Charlotte Binnion, M. Emmerling, Katrina Meath, K. Nunan, M. O’Neill, Fiona O'Toole, Jason Simmonds, Katherine Wearne, A. Winkworth, G. Spangenberg (2003)
Generation and analysis of expressed sequence tags in white clover (Trifolium repens L.)Plant Science, 165
J-PZ Wang, BG Lindsay, L Liying Cui, PK Wall, J Marion, J Zhang, CW Pamphilis (2005)
Gene capture prediction and overlap estimation in EST sequencing from one or multiple librariesBMC Bioinformatics, 6
F. Hatey, G. Tosser-Klopp, C. Clouscard-Martinato, P. Mulsant, F. Gasser (1998)
Expressed sequence tags for genes: a reviewGenetics, Selection, Evolution : GSE, 30
T. Thiel, W. Michalek, R. Varshney, A. Graner (2003)
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)Theoretical and Applied Genetics, 106
S. Altschul, M. Boguski, W. Gish, J. Wootton (1994)
Issues in searching molecular sequence databasesNature Genetics, 6
R. Hoeven, C. Ronning, J. Giovannoni, G. Martin, S. Tanksley (2002)
Deductions about the Number, Organization, and Evolution of Genes in the Tomato Genome Based on Analysis of a Large Expressed Sequence Tag Collection and Selective Genomic Sequencing Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010478.The Plant Cell Online, 14
G. Tóth, Zoltán Gáspári, J. Jurka (2000)
Microsatellites in different eukaryotic genomes: survey and analysis.Genome research, 10 7
J. Bennetzen, C. Coleman, Renyi Liu, Jianxin Ma, W. Ramakrishna (2004)
Consistent over-estimation of gene number in complex plant genomes.Current opinion in plant biology, 7 6
Xiaoqiu Huang, A. Madan (1999)
CAP3: A DNA sequence assembly program.Genome research, 9 9
I. Eujayl, M. Sorrells, M. Baum, P. Wolters, W. Powell (2002)
Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheatTheoretical and Applied Genetics, 104
Ju-Kyung Yu, Qi Sun, M. Rota, H. Edwards, H. Tefera, M. Sorrells (2006)
Expressed sequence tag analysis in tef (Eragrostis tef (Zucc) Trotter).Genome, 49 4
Bland Ewing, L. Hillier, M. Wendl, Philip Green (1998)
Base-calling of automated sequencer traces using phred. I. Accuracy assessment.Genome research, 8 3
C. Ravel, S. Praud, A. Murigneux, L. Linossier, M. Dardevet, F. Balfourier, P. Dufour, D. Brunel, G. Charmet (2006)
Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association studyTheoretical and Applied Genetics, 112
Ji-ping Wang, B. Lindsay, J. Leebens-Mack, Liying Cui, K. Wall, W. Miller, C. dePamphilis (2004)
EST clustering error evaluation and correctionBioinformatics, 20 17
V. Echenique, P. Polci, L. Mroginski (1996)
Plant regeneration in weeping lovegrass, (Eragrostis curvula) through inflorescence culturePlant Cell, Tissue and Organ Culture, 46
Eragrostis curvula (Schrad.) Nees is a forage grass native to the semiarid regions of Southern Africa, which reproduces mainly by pseudogamous diplosporous apomixis. A collection of ESTs was generated from four cDNA libraries, three of them obtained from panicles of near-isogenic lines with different ploidy levels and reproductive modes, and one obtained from 12 days-old plant leaves. A total of 12,295 high-quality ESTs were clustered and assembled, rendering 8,864 unigenes, including 1,490 contigs and 7,394 singletons, with a genome coverage of 22%. A total of 7,029 (79.11%) unigenes were functionally categorized by BLASTX analysis against sequences deposited in public databases, but only 37.80% could be classified according to Gene Ontology. Sequence comparison against the cereals genes indexes (GI) revealed 50% significant hits. A total of 254 EST-SSRs were detected from 219 singletons and 35 from contigs. Di- and tri- motifs were similarly represented with percentages of 38.95 and 40.16%, respectively. In addition, 190 SNPs and Indels were detected in 18 contigs generated from 3 to 4 libraries. The ESTs and the molecular markers obtained in this study will provide valuable resources for a wide range of applications including gene identification, genetic mapping, cultivar identification, analysis of genetic diversity, phenotype mapping and marker assisted selection.
Plant Molecular Biology – Springer Journals
Published: Jan 15, 2008
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