Access the full text.
Sign up today, get DeepDyve free for 14 days.
Linda Moore, A. Coleman (1989)
The linear 20 kb mitochondrial genome of Pandorina morum (Volvocaceae, Chlorophyta)Plant Molecular Biology, 13
G Wolff, U Kück (1993)
Plant Mitochondria
M. Sprinzl, K. Vassilenko (2004)
Compilation of tRNA sequences and sequences of tRNA genesNucleic Acids Research, 33
S. Henikoff (1984)
Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.Gene, 28 3
P. Boer, M. Gray (1988)
Genes encoding a subunit of respiratory NADH dehydrogenase (ND1) and a reverse transcriptase‐like protein (RTL) are linked to ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA.The EMBO Journal, 7
P. Boer, M. Gray (1988)
Scrambled ribosomal RNA gene pieces in chlamydomonas reinhardtii mitochondrial DNACell, 55
M. Gray, G. Burger, B. Lang (1999)
Mitochondrial Evolution
P. Boer, M. Gray (1986)
The URF 5 gene of Chlamydomonas reinhardtii mitochondria: DNA sequence and mode of transcription.The EMBO Journal, 5
S Anderson, AT Bankier, BG Barrell, MHL de Bruijn, AR Coulson, J Drouin, IC Eperon, DP Nierlich, BA Roe, F Sanger, PH Schreier, AJH Smith, R Staden, IG Young (1982)
Mitochondrial Genes
M. Gray, P. Boer (1988)
Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA.Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 319 1193
BD Karger (1990)
Preparation of single-stranded DNA from phagemidsFocus, 12
Eileen Denovan-Wright, Robert Lee (1994)
Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii.Journal of molecular biology, 241 2
F. Sanger, S. Nicklen, A. Coulson (1977)
DNA sequencing with chain-terminating inhibitors.Proceedings of the National Academy of Sciences of the United States of America, 74 12
P. Boer, M. Gray (1991)
Short dispersed repeats localized in spacer regions of Chlamydomonas reinhardtii mitochondrial DNACurrent Genetics, 19
K. Lonergan, M. Gray (1993)
Editing of transfer RNAs in Acanthamoeba castellanii mitochondria.Science, 259 5096
E. Denovan‐Wright, Robert Lee (1992)
Comparative analysis of the mitochondrial genomes of Chlamydomonas eugametos and Chlamydomonas moewusiiCurrent Genetics, 21
G. Wolff, G. Burger, B. Lang, U. Kück (1993)
Mitochondrial genes in the colourless alga Prototheca wickerhamii resemble plant genes in their exons but fungal genes in their introns.Nucleic acids research, 21 3
Robert Lee, C. Dumas, C. Lemieux, M. Turmel (1991)
Cloning and characterization of the Chlamydomonas moewusii mitochondrial genomeMolecular and General Genetics MGG, 231
S. Altschul, W. Gish, W. Miller, E. Myers, D. Lipman (1990)
Basic local alignment search tool.Journal of molecular biology, 215 3
M. Hur, R. Waring (1995)
Two group I introns with a C.G basepair at the 5' splice-site instead of the very highly conserved U.G basepair: is selection post-translational?Nucleic acids research, 23 21
M. Buchheim, C. Lemieux, C. Otis, R. Gutell, R. Chapman, M. Turmel (1996)
Phylogeny of the Chlamydomonadales (Chlorophyceae): a comparison of ribosomal RNA gene sequences from the nucleus and the chloroplast.Molecular phylogenetics and evolution, 5 2
U. Kessler, K. Zetsche (1995)
Physical map and gene organization of the mitochondrial genome from the unicellular green alga Platymonas (Tetraselmis) subcordiformis (Prasinophyceae)Plant Molecular Biology, 29
M. Turmel, R. Gutell, J. Mercier, C. Otis, C. Lemieux (1993)
Analysis of the chloroplast large subunit ribosomal RNA gene from 17 Chlamydomonas taxa. Three internal transcribed spacers and 12 group I intron insertion sites.Journal of molecular biology, 232 2
A. Antaramián, R. Coria, J. Ramírez, D. González-Halphen (1996)
The deduced primary structure of subunit I from cytochrome c oxidase suggests that the genus Polytomella shares a common mitochondrial origin with Chlamydomonas.Biochimica et biophysica acta, 1273 3
G Wolff, I Plante, BF Lang, U Kück, G Burger (1994)
Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamiiJ Mol Biol, 237
T. Friedl (1995)
INFERRING TAXONOMIC POSITIONS AND TESTING GENUS LEVEL ASSIGNMENTS IN COCCOID GREEN LICHEN ALGAE: A PHYLOGENETIC ANALYSIS OF 18S RIBOSOMAL RNA SEQUENCES FROM DICTYOCHLOROPSIS RETICULATA AND FROM MEMBERS OF THE GENUS MYRMECIA (CHLOROPHYTA, TREBOUXIOPHYCEAE CL. NOV.)1Journal of Phycology, 31
G. Wolff, I. Plante, B. Lang, U. Kück, G. Burger (1994)
Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization.Journal of molecular biology, 237 1
C. Howe, R. Barker, C. Bowman, T. Dyer (1988)
Common features of three inversions in wheat chloroplast DNACurrent Genetics, 13
D. Higgins, A. Bleasby, R. Fuchs (1992)
CLUSTAL V: improved software for multiple sequence alignmentComputer applications in the biosciences : CABIOS, 8 2
B. Golden, T. Cech (1996)
Conformational switches involved in orchestrating the successive steps of group I RNA splicing.Biochemistry, 35 12
F. Michel, E. Westhof (1990)
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.Journal of molecular biology, 216 3
H. Shimada, M. Sugiura (1989)
Pseudogenes and short repeated sequences in the rice chloroplast genomeCurrent Genetics, 16
L. Colleaux, M. Michel-Wolwertz, R. Matagne, B. Dujon (1990)
The apocytochrome b gene of Chlamydomonas smithii contains a mobile intron related to both Saccharomyces and Neurospora intronsMolecular and General Genetics MGG, 223
AM Nedelcu (1997)
Fragmented and scrambled mitochondrial ribosomal RNA coding regions: a model for their origin and evolution within the green algal groupMol Biol Evol, 14
C. Vahrenholz, G. Riemen, E. Pratje, B. Dujon, G. Michaelis (1993)
Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replicationCurrent Genetics, 24
F. Michel, M. Hanna, R. Green, D. Bartel, J. Szostak (1989)
The guanosine binding site of the Tetrahymena ribozymeNature, 342
M. Hanson, C. Sutton, Bingwei Luis (1996)
Plant organelle gene expression: Altered by RNA editingTrends in Plant Science, 1
R. Matagne, Dominique Rongvaux, R. Loppes (1988)
Transmission of mitochondrial DNA in crosses involving diploid gametes homozygous or heterozygous for the mating-type locus in ChlamydomonasMolecular and General Genetics MGG, 214
M. Turmel, J. Mercier, M. Côté (1993)
Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas.Nucleic acids research, 21 22
KR Mattox, KD Stewart (1984)
Systematics of the Green Algae
C. Beagley, N. Okada, D. Wolstenholme (1996)
Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase.Proceedings of the National Academy of Sciences of the United States of America, 93 11
G. Michaelis, C. Vahrenholz, E. Pratje (1990)
Mitochondrial DNA of Chlamydomonas reinhardtii: The gene for apocytochrome b and the complete functional map of the 15.8 kb DNAMolecular and General Genetics MGG, 223
M. Mikkonen, J. Vuoristo, T. Alatossava (1994)
Ribosome binding site consensus sequence of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H.FEMS microbiology letters, 116 3
S. Anderson, A. Bankier, B. Barrell, M. Debruijn, A. Coulson, J. Drouin, I. Eperon, D. Nierlich, B. Roe, F. Sanger, P. Schreier, Andrew Smith, R. Staden, I. Young (1982)
Comparison of the Human and Bovine Mitochondrial GenomesCold Spring Harbor Monograph Archive, 12
William McClain (1993)
Rules that govern tRNA identity in protein synthesis.Journal of molecular biology, 234 2
P. Boer, M. Gray (1988)
Transfer RNA genes and the genetic code in Chlamydomonas reinhardtii mitochondriaCurrent Genetics, 14
H. Ettl (1978)
Die Gattung Chlamydomonas EhrenbergTaxon, 27
A. Nedelcu (1997)
Fragmented and scrambled mitochondrial ribosomal RNA coding regions among green algae: a model for their origin and evolution.Molecular biology and evolution, 14 5
E. Denovan‐Wright, Robert Lee (1995)
Evidence that the fragmented ribosomal RNAs of Chlamydomonas mitochondria are associated with ribosomesFEBS Letters, 370
MW Gray, D Spencer (1996)
Evolution of Microbial Life
M. Côté, M. Turmel (2004)
In vitro self-splicing reactions of chloroplast and mitochondrial group-I introns in Chlamydomonas eugametos and Chlamydomonas moewusiiCurrent Genetics, 27
K. Mattox (1984)
Classification of the green algae: a concept based on comparative cytology
Jutta Steinkötter, D. Bhattacharya, Ingrid Semmelroth, C. Bibeau, M. Melkonian (1994)
PRASINOPHYTES FORM INDEPENDENT LINEAGES WITHIN THE CHLOROPHYTA: EVIDENCE FROM RIBOSOMAL RNA SEQUENCE COMPARISONS 1Journal of Phycology, 30
K Oda, K Yamato, E Ohta, Y Nakamura, M Takemura, N Nozato, K Akashi, T Kanegae, Y Ogura, T Kohchi, K Ohyama (1992)
Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNAJ Mol Biol, 223
R. Hollister (1990)
Why Is Inequality Growing, 12
MW Gray (1995)
The Molecular Biology of Plant Mitochondria
J. Boynton, E. Harris, B. Burkhart, Patrick Lamerson, Nicholas GILLHAMt (1987)
Transmission of mitochondrial and chloroplast genomes in crosses of Chlamydomonas.Proceedings of the National Academy of Sciences of the United States of America, 84 8
J. Kroymann, K. Zetsche (1997)
The apocytochrome-b gene in Chlorogonium elongatum (Chlamydomonadaceae): an intronic GIY-YIG ORF in green algal mitochondriaCurrent Genetics, 31
K. Oda, K. Yamato, E. Ohta, Yasukazu Nakamura, M. Takemura, N. Nozato, K. Akashi, T. Kanegae, Y. Ogura, T. Kohchi, K. Ohyama (1992)
Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.Journal of molecular biology, 223 1
A. Bendich (1993)
Reaching for the ring: the study of mitochondrial genome structureCurrent Genetics, 24
W. Swords (2003)
Preparation of single-stranded DNA from phagemid vectors.Methods in molecular biology, 235
The complete nucleotide sequence of the Chlamydomonas eugametos (Chlamydomonadales, Chlorophyceae, sensu Mattox and Stewart) mitochondrial genome has been determined (22 897 bp, 34.6% G + C). The genes identified in this circular-mapping genome include those for apocytochrome b, subunit 1 of the cytochrome oxidase complex, subunits 1, 2, 4, 5, and 6 of the NADH dehydrogenase complex, discontinuous large and small subunit ribosomal rRNAs and three tRNAs whose anticodons CAU, CCA and UUG are specific for methionine, tryptophan and glutamine, respectively. The C. eugametos mitochondrial DNA (mtDNA), therefore, shares almost the same reduced set of coding functions and similar unusual features of rRNA gene organization with the linear 15.8 kb mtDNA of Chlamydomonas reinhardtii, the only other completely sequenced chlamydomonadalean mtDNA. However, sequence analysis of the C. eugametos mtDNA has revealed the following distinguishing features relative to those of C. reinhardtii: (1) the absence of a reverse transcriptase-like gene homologue, (2) the presence of an additional gene for tRNAmet that may be a pseudogene, (3) a completely different gene order, (4) transcription of all genes from the same mtDNA strand, (5) a lower G + C content, (6) less pronounced bias in codon usage, and (7) nine group I introns, several of which contain open reading frames coding for potential maturases/endonucleases and two have a nucleotide at the 5′ or 3′ splice site of the deduced precursor RNAs that deviates from highly conserved nucleotides reported in other group I introns. The features of mitochondrial genome organization and gene content shared by C. eugametos and C. reinhardtii contrast with those of other green algal mtDNAs that have been characterized in detail. The deep evolutionary divergence between these two Chlamydomonas taxa within the Chlamydomonadales suggests that their shared features of mitochondrial genome organization evolved prior to the origin of this group.
Plant Molecular Biology – Springer Journals
Published: Oct 6, 2004
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.